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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004171 ID=TCONS_00004171|Name=TCONS_00004171|organism=Clytia hemisphaerica|type=transcript|length=2430bp
aatcaattgtggtgttcaaaattacaccgggaactcccctttgtctcaaa
tatttcttgaaggattgtagCTCAAAGTCCGTCTTAactctaaaatccta
aaaatgttGACAATGTAGCTGTAGctcaaaacaataatttttgcTCAAGA
AATCTTGGTTTTTCtttggaaagtttcatggggatagtacaaactttcat
caagatctttacctcctgatctaccatttttttatttaatttttatttat
agtataggtaacacgaacaaataTTACAAACGTTCCTAgcctcccgcaaa
aggaccacagatcataccgccaggaggaaggaaccccAAATAAGCTAAAC
AATATGAACGCAGTAATGACTAAAAAAGAAACTAACTACAGAGGATAATT
attaacaaaaagaaaaacaagaagagCTAGGAGAGCAAAAGACTAgaata
acggtcccccaaaacgtCCAGTATTACAGATGAATTTTATCGTTATGttc
aatatatcatgattttggacaatgctaaaatcggggtcgccataaagaag
tattctacacaattttttgggattaaatggaaacaaggttatgccaagtt
gaagaaggctgttGAACATAACAAGTCTGTCATTGTagtaatcagagcaa
tgcatcagGAAATGTTGTGTCGTTTCAACAGAATTACTTCGGCAGTTGCA
GAATGGGTCGATTGTGTCATGTCTAAATTTGTGGTCCCAaagatgactga
aaccaacccttaatcggttaagTAGAACCACGCCATTGTAAGCAAAAGGT
AAGCAGGTGCAAAGCcattgattattttataaaagtaaATTAGTCTTCGA
CTTAGTCGCCTGTTCAACAGGCTTTCAagacctaactcaagataaatttt
ttctctggatgttCCTCTGAAACAGCAATGGCTGCGTTGTTAAAATAAAT
TTCTGGAGGATCAGGTAGATTTATCCTCCGAGTGAAGTACACTTCAACAG
CCTGTTTAGAAGGATCAGGGTTGAAGATCattttccattgatgagcccac
tCACTAACCTTCTGCATGTCACTGTTCAATTCGTTTGAACAGCGAATATG
ATCAAGGATAAGGGAGAATATTGACGAgtcatcagcaaaaatttttatca
tggaAATAATTCCTTCAGGGAGGTCGTTAATATATCAGAAAGAAGAGCGG
TCCTAGAATAGAGCCTTGAGGTACACCGGCCAAGACCTCTGTCCAATTGG
AAGTTTGGCCATCAAGAACCACCCGCAGCAACCTACctgagagaaaattt
tggagtAATGAGAGCAATCTACCATTTAAAGATAAGTCCATCAAAATGTG
CTTATAAACTCTTAAATCTTCAAACGTGAATTTTACCAacctcaaaaaac
atttttgctatCAACCTGTTTGCTCTTAAATGCAGTTAAATGAGCCCAAA
GTTCAAATCATCCAAAGAGAAGATGCTTTAGGAATATTTTATACTTTTGG
ACTTATCTTTAAATATTTAAGGGTAGAAAGCAAAGTTGTTTTTAGAAGTT
AGTAAAGGTCATCGtttaagaaaaattgaattaaaaattttggtCGCCAA
AATGGCCAGGGGACTCTAAATCCTTTTTCTCTGTGAGGTTGTTCTTCAGA
TTAGTTTTCGAGGTTGGCTTGGgttgaattttttcatctatgactTACAA
TTTAGCGTACACTTGCCTAAAAttccaaacaattttcaatattttcaatc
aaatctcaagcacaagttatcaaatgaaaaagtttttgttaaCAGAACAA
AATTCCATTTGATGTCTACAAAATCTAGCGGACTTCAACtagaaattttt
cttaaaagttgAAATGAATTATCATAATTTAACAAAGCATAAACAATAAC
AAACTTATCCTATGCCAAGTGATTGCAGAGATAATCGAAGATAAATAGTA
AGGGCAGCCTTGTGAGCGTCACTGTTCGCCCTCGATTgtaaaagtaaaga
aaacaagaaacttttgcaatttgCAGAACAAACAGCCCCAAGTTAACAGG
TAAAGCTATCAAATCATAATGGTAGCCTAGCTGAGCATAGAAGTGCactt
tttaaaagcaaaaacaacTTCTTTGACTGGTTAGCTACGGCTGATAGGTA
AGGTGTCCAGAATTAGGCATTGTCCGCAATTAGGCAAATGTACATTAGGT
aatttttcatagtttttataaaaaatgttaatTAGTCAGCCAtgatgtgg
tgtttcaagatggcggtttAAACGGCTCAGTGTTTTCAGTGTAAATGCAG
GAAGTAAATGcatgttgcaagcttcaatttctgtcatatcttttttataa
tgactttgaaacttggcaaatcaaacacatgattttcatcaaggggattc
ttttttatatttgttgaaGGTTTAgcaatt Run BLAST on NCBI transcript from alignment at sc0000039:313295..315724 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004171 ID=TCONS_00004171|Name=TCONS_00004171|organism=Clytia hemisphaerica|type=transcript|length=2430bp|location=Sequence derived from alignment at sc0000039:313295..315724 (Clytia hemisphaerica)
aattgcTAAACCttcaacaaatataaaaaagaatccccttgatgaaaatc
atgtgtttgatttgccaagtttcaaagtcattataaaaaagatatgacag
aaattgaagcttgcaacatgCATTTACTTCCTGCATTTACACTGAAAACA
CTGAGCCGTTTaaaccgccatcttgaaacaccacatcaTGGCTGACTAat
taacattttttataaaaactatgaaaaattACCTAATGTACATTTGCCTA
ATTGCGGACAATGCCTAATTCTGGACACCTTACCTATCAGCCGTAGCTAA
CCAGTCAAAGAAgttgtttttgcttttaaaaagtGCACTTCTATGCTCAG
CTAGGCTACCATTATGATTTGATAGCTTTACCTGTTAACTTGGGGCTGTT
TGTTCTGcaaattgcaaaagtttcttgttttctttacttttacAATCGAG
GGCGAACAGTGACGCTCACAAGGCTGCCCTTACTATTTATCTTCGATTAT
CTCTGCAATCACTTGGCATAGGATAAGTTTGTTATTGTTTATGCTTTGTT
AAATTATGATAATTCATTTcaacttttaagaaaaatttctaGTTGAAGTC
CGCTAGATTTTGTAGACATCAAATGGAATTTTGTTCTGttaacaaaaact
ttttcatttgataacttgtgcttgagatttgattgaaaatattgaaaatt
gtttggaaTTTTAGGCAAGTGTACGCTAAATTGTAagtcatagatgaaaa
aattcaacCCAAGCCAACCTCGAAAACTAATCTGAAGAACAACCTCACAG
AGAAAAAGGATTTAGAGTCCCCTGGCCATTTTGGCGaccaaaatttttaa
ttcaatttttcttaaaCGATGACCTTTACTAACTTCTAAAAACAACTTTG
CTTTCTACCCTTAAATATTTAAAGATAAGTCCAAAAGTATAAAATATTCC
TAAAGCATCTTCTCTTTGGATGATTTGAACTTTGGGCTCATTTAACTGCA
TTTAAGAGCAAACAGGTTGatagcaaaaatgttttttgaggtTGGTAAAA
TTCACGTTTGAAGATTTAAGAGTTTATAAGCACATTTTGATGGACTTATC
TTTAAATGGTAGATTGCTCTCATTactccaaaattttctctcagGTAGGT
TGCTGCGGGTGGTTCTTGATGGCCAAACTTCCAATTGGACAGAGGTCTTG
GCCGGTGTACCTCAAGGCTCTATTCTAGGACCGCTCTTCTTTCTGATATA
TTAACGACCTCCCTGAAGGAATTATTtccatgataaaaatttttgctgat
gacTCGTCAATATTCTCCCTTATCCTTGATCATATTCGCTGTTCAAACGA
ATTGAACAGTGACATGCAGAAGGTTAGTGagtgggctcatcaatggaaaa
tGATCTTCAACCCTGATCCTTCTAAACAGGCTGTTGAAGTGTACTTCACT
CGGAGGATAAATCTACCTGATCCTCCAGAAATTTATTTTAACAACGCAGC
CATTGCTGTTTCAGAGGaacatccagagaaaaaatttatcttgagttagg
tctTGAAAGCCTGTTGAACAGGCGACTAAGTCGAAGACTAATttactttt
ataaaataatcaatgGCTTTGCACCTGCTTACCTTTTGCTTACAATGGCG
TGGTTCTActtaaccgattaagggttggtttcagtcatcttTGGGACCAC
AAATTTAGACATGACACAATCGACCCATTCTGCAACTGCCGAAGTAATTC
TGTTGAAACGACACAACATTTCctgatgcattgctctgattactACAATG
ACAGACTTGTTATGTTCaacagccttcttcaacttggcataaccttgttt
ccatttaatcccaaaaaattgtgtagaatacttctttatggcgaccccga
ttttagcattgtccaaaatcatgatatattgaaCATAACGATAAAATTCA
TCTGTAATACTGGacgttttgggggaccgttattcTAGTCTTTTGCTCTC
CTAGctcttcttgtttttctttttgttaatAATTATCCTCTGTAGTTAGT
TTCTTTTTTAGTCATTACTGCGTTCATATTGTTTAGCTTATTTggggttc
cttcctcctggcggtatgatctgtggtccttttgcgggaggcTAGGAACG
TTTGTAAtatttgttcgtgttacctatactataaataaaaattaaataaa
aaaatggtagatcaggaggtaaagatcttgatgaaagtttgtactatccc
catgaaactttccaaaGAAAAACCAAGATTTCTTGAgcaaaaattattgt
tttgagCTACAGCTACATTGTCaacatttttaggattttagagtTAAGAC
GGACTTTGAGctacaatccttcaagaaatatttgagacaaaggggagttc
ccggtgtaattttgaacaccacaattgatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004171-exon-sc0000039-1491911889:313295..315724 | TCONS_00004171-exon-sc0000039-1491911889:313295..315724 | Clytia hemisphaerica | exon |
| TCONS_00004171-exon-sc0000039-1510915933:313295..315724 | TCONS_00004171-exon-sc0000039-1510915933:313295..315724 | Clytia hemisphaerica | exon |
| TCONS_00004171-exon-sc0000039-1575043694:313295..315724 | TCONS_00004171-exon-sc0000039-1575043694:313295..315724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:313295..315724 . |
Blast
The following BLAST results are available for this feature:
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