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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004170 ID=TCONS_00004170|Name=TCONS_00004170|organism=Clytia hemisphaerica|type=transcript|length=2458bp
aaaaaagtacagctactgtctaaatttgatgaAGACAGGATGCAATCatg
tttttggacttggacgtatttgccagtatggatttcgtgtaactaacgta
caactgaaacgtttttgatGCATTGGtttaagggtacttacaaagattgt
ttgattttcagttggtgtaaagtaataattccagctaggcgtgaatgact
ccataatccattgatttttagctttcatttggctaaatttgcttttgcTC
GCTTACGCTtgcgtcaatttattaattatgttggcgcatgcacctctttt
cccatcttgcacccttattgaaaaattgaatgttggtacaaaagaaattt
tgcttgccGTGAGGCTTACtgtacggaaaaatatcttcggcgcgaGATTT
TGTGGAATCCATACTGCACTGGCGTATTTGGCTACAACAACAGCAGAGGG
agacaatcaaaaatatgttatgTTGGCGCCAGCTGTTTGCGTCGGCCAAC
CAATCCAACCAACTTGGCAGACAAAAATGCTGGAGGAGTCAGAAAATTGT
CAGAATTTTTCATGAAGCGAgcgaataaatattaaaaactatactttgaa
accattttccaaaaaacctgACTAGATTTACTACCGACCAACTGACTGAC
TCTATTTTATGAAGATTTTTGACGTGAACGAAACATATATTTGATTGCCG
CCAGAACACTGGATAAAATGACGATCAtcacatattatttttttattgtt
cacACATCTGGACGCAGATTGTGTGTTGTGACCTTGGCACATgttttggg
cttttttggttggaaACACCCACCTGTTCATAATAGGTAACAGACATCCA
TGTTAGAGAATGGGTGGACCTGCCCATTTGAAACACTATTTTACCATAAT
TTCATCACCAATCGTTAGTCAAATAAATTAGTTTGATGCTGTTAAAAGAC
AATACAGATCCACAAGTGCATTATTTTTAAGTTTATAATGTCAATTTCTT
TTCTCGATATTTTCTgtctgatttttacttttttacttattttatatcaa
aaataaaaaaataaaatttttatacaaattatcATGATATAATATGAACA
CTGCGTGTACTGTAATCTTTTAGAAGGGTTTGTCCATAATAGGGGGTGTC
CATAAAAGGGTAACCTACCTTACTAAAATACAGTTTCTGTTGAAATTTTA
TAGAGACTGAACTACTTTTTCGCAAAGTTTTTGaggcaaattgtgttttt
ctggagtatGCTTAATTGTTAATGGCAGACAGTTACAATTTCTAGAGTGT
GAATTTCTAGTAGGAGCACCTGAAGAATTGTGACAGAGTGTTATTAGAAT
TTGGTCAGGTATACTAAAATCATCCCTGGTTTAGAAATTTAATaaagatc
aaaatatttttcacaaaagtttagaaatttgataaaaatcaaaacttttt
tcacaaagtTATGCGCCTGCTAGGTTGCTTAGcctttcaagaaatttttt
atAGGGGGGCCACAATTATACCTTTGAAATGCATTTCAGGGCGAGTAACA
CCATTTCCATTTGTTAGAATAGAGATACCCCGAAAATAtttgatttgata
aaaaagaaaatgtgtaCATACATAACTTTAAAAGGTACCAATAAAGGCGG
CAATATTACATAATTTTAAGATTGTACGCGTTGTGATCAAAATGATACAT
AAGTGCTATCTACTTGTCCATTTACCATTTcgtattgcattgttttattt
tgcttggttattgTAAACATGCTACTGGGATAAATTTAATGAACtattat
tcaaaaagaaaactacttgtatttataaatgtaaatgatttgtctatttg
attttttgataaaatctttgtaCAGGTTTATGCAGGTTTATGACATAtct
aaaattttgtaatttgtaatttgtccctagatttttactttatcttcaaa
aatgttaaaagttgaatttaaatGCTTAACATACGGAATGTTCATTTTCT
ACTCCATCTAACTACTAGGAGTTTTGAGTAACCTGGACaaacatttttaa
gcaaaatgtgGTTTTTAGCtcttaaaattttccaatttcgcTTGATTCTT
TAGGCATCTAGTCCTTCCTTCCATCGCAGCTACTTAACTTCTTTACAAGC
TATCCAACTAATAATATAGCTATATTGGCTGACTTTCCAGCATCGGCTGG
TTTATTCTAGTTAAAAAAAAGCCctggtttattttttcataaggcCAGGT
CCAATTGATAGTTTGGTATGTGCCCTCCAACGGACtctaaatatttgaga
aaaatgtttccgttttagttggaaaaatctttttacctCCTTTTCTTCTA
TAAACAACATCCACTTCTCACAGTCACAAAAAATTTCCCAGTGTAGTCCA
tacataaaaacaaatattaagcACCTAAATGCAGTTAGTCATGGCTGTAT
TCCTTAAG Run BLAST on NCBI transcript from alignment at sc0000039:310710..313167 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004170 ID=TCONS_00004170|Name=TCONS_00004170|organism=Clytia hemisphaerica|type=transcript|length=2458bp|location=Sequence derived from alignment at sc0000039:310710..313167 (Clytia hemisphaerica)
CTTAAGGAATACAGCCATGACTAACTGCATTTAGGTgcttaatatttgtt
tttatgtaTGGACTACACTGGGAAATTTTTTGTGACTGTGAGAAGTGGAT
GTTGTTTATAGAAGAAAAGGaggtaaaaagatttttccaactaaaacgga
aacatttttctcaaatatttagaGTCCGTTGGAGGGCACATACCAAACTA
TCAATTGGACCTGgccttatgaaaaaataaaccagGGCTTTTTTTTAACT
AGAATAAACCAGCCGATGCTGGAAAGTCAGCCAATATAGCTATATTATTA
GTTGGATAGCTTGTAAAGAAGTTAAGTAGCTGCGATGGAAGGAAGGACTA
GATGCCTAAAGAATCAAgcgaaattggaaaattttaagaGCTAAAAACca
cattttgcttaaaaatgtttGTCCAGGTTACTCAAAACTCCTAGTAGTTA
GATGGAGTAGAAAATGAACATTCCGTATGTTAAGCatttaaattcaactt
ttaacatttttgaagataaagtaaaaatctagggacaaattacaaattac
aaaattttagaTATGTCATAAACCTGCATAAACCTGtacaaagattttat
caaaaaatcaaatagacaaatcatttacatttataaatacaagtagtttt
ctttttgaataataGTTCATTAAATTTATCCCAGTAGCATGTTTAcaata
accaagcaaaataaaacaatgcaatacgAAATGGTAAATGGACAAGTAGA
TAGCACTTATGTATCATTTTGATCACAACGCGTACAATCTTAAAATTATG
TAATATTGCCGCCTTTATTGGTACCTTTTAAAGTTATGTATGtacacatt
ttcttttttatcaaatcaaaTATTTTCGGGGTATCTCTATTCTAACAAAT
GGAAATGGTGTTACTCGCCCTGAAATGCATTTCAAAGGTATAATTGTGGC
CCCCCTataaaaaatttcttgaaaggCTAAGCAACCTAGCAGGCGCATAa
ctttgtgaaaaaagttttgatttttatcaaatttctaaacttttgtgaaa
aatattttgatctttATTAAATTTCTAAACCAGGGATGATTTTAGTATAC
CTGACCAAATTCTAATAACACTCTGTCACAATTCTTCAGGTGCTCCTACT
AGAAATTCACACTCTAGAAATTGTAACTGTCTGCCATTAACAATTAAGCa
tactccagaaaaacacaatttgcctCAAAAACTTTGCGAAAAAGTAGTTC
AGTCTCTATAAAATTTCAACAGAAACTGTATTTTAGTAAGGTAGGTTACC
CTTTTATGGACACCCCCTATTATGGACAAACCCTTCTAAAAGATTACAGT
ACACGCAGTGTTCATATTATATCATgataatttgtataaaaattttattt
ttttatttttgatataaaataagtaaaaaagtaaaaatcagacAGAAAAT
ATCGAGAAAAGAAATTGACATTATAAACTTAAAAATAATGCACTTGTGGA
TCTGTATTGTCTTTTAACAGCATCAAACTAATTTATTTGACTAACGATTG
GTGATGAAATTATGGTAAAATAGTGTTTCAAATGGGCAGGTCCACCCATT
CTCTAACATGGATGTCTGTTACCTATTATGAACAGGTGGGTGTttccaac
caaaaaagcccaaaacATGTGCCAAGGTCACAACACACAATCTGCGTCCA
GATGTgtgaacaataaaaaaataatatgtgaTGATCGTCATTTTATCCAG
TGTTCTGGCGGCAATCAAATATATGTTTCGTTCACGTCAAAAATCTTCAT
AAAATAGAGTCAGTCAGTTGGTCGGTAGTAAATCTAGTcaggttttttgg
aaaatggtttcaaagtatagtttttaatatttattcgcTCGCTTCATGAA
AAATTCTGACAATTTTCTGACTCCTCCAGCATTTTTGTCTGCCAAGTTGG
TTGGATTGGTTGGCCGACGCAAACAGCTGGCGCCAAcataacatattttt
gattgtctCCCTCTGCTGTTGTTGTAGCCAAATACGCCAGTGCAGTATGG
ATTCCACAAAATCtcgcgccgaagatatttttccgtacaGTAAGCCTCAC
ggcaagcaaaatttcttttgtaccaacattcaatttttcaataagggtgc
aagatgggaaaagaggtgcatgcgccaacataattaataaattgacgcaA
GCGTAAGCGAgcaaaagcaaatttagccaaatgaaagctaaaaatcaatg
gattatggagtcattcacgcctagctggaattattactttacaccaactg
aaaatcaaacaatctttgtaagtacccttaaaCCAATGCatcaaaaacgt
ttcagttgtacgttagttacacgaaatccatactggcaaatacgtccaag
tccaaaaacatGATTGCATCCTGTCTtcatcaaatttagacagtagctgt
actttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004170-exon-sc0000039-1491911889:310710..313167 | TCONS_00004170-exon-sc0000039-1491911889:310710..313167 | Clytia hemisphaerica | exon |
| TCONS_00004170-exon-sc0000039-1510915933:310710..313167 | TCONS_00004170-exon-sc0000039-1510915933:310710..313167 | Clytia hemisphaerica | exon |
| TCONS_00004170-exon-sc0000039-1575043694:310710..313167 | TCONS_00004170-exon-sc0000039-1575043694:310710..313167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:310710..313167 . |
Blast
The following BLAST results are available for this feature:
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