TCONS_00004163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004163
Unique NameTCONS_00004163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004163 ID=TCONS_00004163|Name=TCONS_00004163|organism=Clytia hemisphaerica|type=transcript|length=281bp
AGAATAGCTGTGTATTCAACAAATGACGAAGATCTAAACTCTCTTTATCG
TAAGTTGGAGATAAAGACAATGTTTCCAGTTAATGTATCCAGCTTTGGAG
CGTTTAACGTTTTGCAATATCATTATCGAAGGGGAGATGAGAATCAATTG
GATGTATTCATCGAGAACTCGTTACAAATTCCTAAACATAAACAGCGACT
TTTTGTGGATGGCCGTAGAATTTCGAGTAACGATATCGAAAATATCGTAA
ATAAGGGTAGGACGGCGAATCTGACAGGGAC
Run BLAST on NCBI

transcript from alignment at sc0000039:144383..144663

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004163 ID=TCONS_00004163|Name=TCONS_00004163|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at sc0000039:144383..144663 (Clytia hemisphaerica)
GTCCCTGTCAGATTCGCCGTCCTACCCTTATTTACGATATTTTCGATATC
GTTACTCGAAATTCTACGGCCATCCACAAAAAGTCGCTGTTTATGTTTAG
GAATTTGTAACGAGTTCTCGATGAATACATCCAATTGATTCTCATCTCCC
CTTCGATAATGATATTGCAAAACGTTAAACGCTCCAAAGCTGGATACATT
AACTGGAAACATTGTCTTTATCTCCAACTTACGATAAAGAGAGTTTAGAT
CTTCGTCATTTGTTGAATACACAGCTATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002313XLOC_002313Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004163-exon-sc0000039-1491911889:144383..144663TCONS_00004163-exon-sc0000039-1491911889:144383..144663Clytia hemisphaericaexon
TCONS_00004163-exon-sc0000039-1510915933:144383..144663TCONS_00004163-exon-sc0000039-1510915933:144383..144663Clytia hemisphaericaexon
TCONS_00004163-exon-sc0000039-1575043694:144383..144663TCONS_00004163-exon-sc0000039-1575043694:144383..144663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:144383..144663 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.500804	4.13508	3.76327	2.8544	3.16933	2.26202	10.2538	10.0324	5.20001	12.2132	5.09463	1.34805	15.2998	2.56833	6.79222	10.4946	11.9473	1.5923	3.10299	1.47658	1.97957	0	0.192311	11.7948	7.81235	21.2136	11.1622
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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