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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004135 ID=TCONS_00004135|Name=TCONS_00004135|organism=Clytia hemisphaerica|type=transcript|length=3643bp
CTAAACAGAAGCGTTTCCATTTCATGATCACCACCACTTATATCAAGCTG
AATATAAGTTTCTTTGGCGTTTTCAAAATCACTCTTCATCTGTTCATGTT
TTTCGTATAAACAAGCTTGGATTTGATGTTCTCTACTGGAGATGTGTTCT
CGTGTTTTACCACCTTGGACATTACAAACGATACAGGTGTCATTACGATC
AAAGTGTTCCTCAATGAAAGCCTCGACAGCTACTTCTTCTCGTCTCATCT
TCAGCATGAGTCGTTTGTGATGCCACTTTAGAAACCAATGGTGAATCATG
AGGCCAGCCCAATACTTGGTCATCTTCTGCAAAGCTGACTTTcgtttttc
tcttctcttttgaaCAAATGCTCGCCATTTGTCACAGATATCACGACTGA
TCATTCGCTGTCTGGCTTCTTCTTCTTTCTGACGTACTCGTAATGAGACT
TGCTGAGTGTTGTCTTCTGTTTCTTCATCGCTGGCGTCTCCTGTTTTGAA
ATAATCGTCTTCTGGGTCAAAGACTTCTTCTTCGTTTCCTTGAAGAGgta
attcttcaattttctctGGGTCAGCCTGTTTGGATGGTTCTGTTGATTTA
ACTTCTTCACCTCTCTTCATAATGCGAAAAGTTGTTTGTTGGGCAGGTTG
CTTCTGATTGGCTGACGGTGCAAGAAGTGCACCAGGCATGATCAACCTCA
GTTTTGTACTATCCCACCAACACATTTGCAGCATGTCATTTCGATCCTTC
AACAATTCTAAGAGTAGATTTTTCGCTTGTTGAAAATGGAGCACGCCACC
AATTTGCTTGAAAATCTTGGATTGAGTTGTCTGCTGCTTGACATTAAGAA
ACTTTCGAAACAAGTAAACGATATCTTTACCGAAACCATCAATTCCTTGT
TGTAGGTTGGCCAGCACGACAAGATATAAGCATAACAAACGTGAGATCTT
CAACATACTTTCATTGCTTTGCCTGTCTTCGAATAGAGAGAGCAAAGTTT
TGAATATGCCATCAGGATTAGTCAGCATCTCACAAAATTGCTTGATAAAA
GATACAATTTTGTCccattcttcttttttctttcgtAGGTTTGCCACAGC
TAAGGAGGCTTTGTGGTTGTAAATGAAATCCCATTCTTCCATTTGCACAG
CGTATGAGCGTGGAACACAAAAAGAAAATGGGCGACCAGGTGGTTGAGTA
GCAGAAAAACTGGCGAAAAGTAGAATGATTGGAACTTCCAGCATATCACA
GAAGGTATCCACATTAGCATTGCttttcctcaaaactttaagAGTCGAGT
AAAAGAAATTCTTGACATGAGAATCATAATACAAGGTTTCAAGGCCTTGG
TTGTGGACTTTGAACACCTCTTGAATGGGCAGCCGGTCCATCCGTCGGTC
GAGACGTAACTCATCGATCAGGGGGTTGTTGGGGTCCATGAGGTAGGAGA
TGTGGTTTAATCCGATGTAGAGGTTGATATCAACTTTTCGGTCATTGAGC
CTTTCACTCCATTCGTGACGCATGATCCCCTCCAAGCTTTTCTTTGCTAC
GTGTGGAATGGTAGCCATTTGCTCACTGATTTGCGTCTTGATAATGTGAT
AAAACGGTTTGTAACATTGAAGTAGTCTGTAAAGCATCCAGAGTTCTTCT
GGACGTTTCGGTTGCATCCATTTAGAGTGAGGCTCAGTCATTTCTGAAGA
CAATTGCCGATAAGTGGTAGAGCAAACTCCACTGACAGAGAGGCTTCCCA
GTAAAGCTCTCAGTGCACGAACGAATGAGTCTGATGTAGGAGGTTCATGG
AGACTGCGGCAATGTCGATCGGAACAGTGGTTGGGCACTTGACATATCAT
ATTGGTGTTAACTTCTTGGGTGACAAGTTGGCGAAAGTTGAAAATAACTG
CTTTGAAGATAGACAGAAGAATCTTTGCTGCAATTTCCATTGCTTTCACC
TTGGTGATTTTTCCAGATGGTAAGGATGAAGGCATACTGCCAAGCTTGTA
GTAATACTTCAAGGAAGACTGTTCGAACACCAGATAATCTCGACCACTCC
TACCAAATCCGATCTTTTCCAAGGTTTCGTTGACAAAAGTCTTGTCTGTG
CAAGCATTAGCTAGATTGGCGACCAAATCAAAGATGGATTGAACCAAACC
ATAGAACTTTTTATAAGATTCATACATGTTCTTGAAGACACCATTCCTGT
TGACTTTATCGAAGGTAATCAGCAATTTGAAAACCACTAACTGCCCGACG
GGGTCTTTCTCAAACCCTTTGATCGCATCAAAAAGGTATTTGGCTTCTTT
GGTTAGAAAGGCGTAGCAGTAATAAGCTTCAGCTTTGAGTGAGAGACTCG
TGACATCATTGATCAGGCTAAAAACTGATGCAAAGAGTTCGATCAATTCT
TCCTTTGCAACATCCAACGGTTTCAAAGTGTACTCTTTGAAAGCTAAGAT
AAGATAACTTAACTTCTCATCAATGTTAACAGCAATTTTGGCAGCTTCAA
CATAGTTGTGTTGATCTTTGTACAATCTGGCTAATTGCTGCATCATTTTG
TGCTCTTGGTAAAGCTGCACCAAATCATCTAACATATCATCTCTGGATCG
GAGATACGAGATTTGGAAATTCAGTGTTCCAAACTTCAAGATTTGACGAA
TGGTTTGAATATTGTTGGAATCTTCGTAGAACCTCAATGCTTTTGCCATC
AATTCAGAACTGTCAACTTCGTTCAAGGAGTGTTGTTGTTGGTATTCCAA
CGCTTCGATGAATTTGTTTTCAGACTTGAGGAGAGACATGACTGAACGAT
GGTTGTTGTCTGCTTTGTAACATCGGATGGCATCTTCTTTCTTCCCTGCT
TTCTTGTACAGTCTAGCTGCATCTCCGAACTGGAAAAAAAGTACGATAGT
ATACTACAATATTAAAGACTCGCTGTATAACTTAGTACTAAACAGCAGCA
GTTAATAAGATAAAATCTAGTTGAAATCGTAGGGAAACAAAAGCATAAAC
CTAGAAAAAATACCTTGGATTGTTTTTCGTAGAGCAAAGCGAGAAAATCG
TTAGCATGTGCATTTTGTAATGACGTCACGGCATCTCCCACCAGACCACA
TTTCAAGAATGACAAAGCACAGATTTTGAAACCGTTCAAGATGGTTGTTT
TGGCGATTTTCCCTTTCTTCGAATCCCAACCATCTTTAGCCTTACGGTAA
GCTAATTCGAATTTCAATTTGGCTTGACACTTCTCTCTCAATTGGTCATT
ATCAGCTTTTATAGCACACTTCATGGCAAGTTTCCAGAGGCCTTTGGTGA
AGAAATATTTGCCTTGTTTATCCCATTGTTCCTCAGAAGACTGCTCAGCG
AAATGGTGATCACGAACAGCTCCATCTTCAAGTTTGGCAACATCCACCAA
CTTTTTCTTAACTAGGAAATCAAACATAGGTGCTCTTTTCTTCTTATCTT
CGTCAAAGATCCAAACATTAACACGAGCTCTGGTGACAGCAGTGTATAAC
TTCTTGAGCTCGGAATTCAATAGCTTGTGTTTGTTGTAGTCAAAGTCCAG
TGGACGTGATGAGTAATCAACATCGTTCGGAATGACTTGTAAACTTGAAT
CACTTTCAGTGACATCTACTTCGATTTCGTTGGATTTGGATGC Run BLAST on NCBI transcript from alignment at sc0000039:572300..578267- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004135 ID=TCONS_00004135|Name=TCONS_00004135|organism=Clytia hemisphaerica|type=transcript|length=5968bp|location=Sequence derived from alignment at sc0000039:572300..578267- (Clytia hemisphaerica)
CTAAACAGAAGCGTTTCCATTTCATGATCACCACCACTTATATCAAGCTG
AATATAAGTTTCTTTGGCGTTTTCAAAATCACTCTTCATCTGTTCATGTT
TTTCGTATAAACAAGCTTGGATTTGATGTTCTCTACTGGAGATGTGTTCT
CGTGTTTTACCACCTTGGACATTACAAACGATACAGGTGTCATTACGATC
AAAGTGTTCCTCAATGAAAGCCTCGACAGCTACTTCTTCTCGTCTCATCT
TCAGCATGAGTCGTTTGTGATGCCACTTTAGAAACCAATGGTGAATCATG
AGGCCAGCCCAATACTTGGTCATCTTCTGCAAAGCTGACTTTCGTTTTTC
TCTTCTCTTTTGAACAAATGCTCGCCATTTGTCACAGATATCACGACTGA
TCATTCGCTGTCTGGCTTCTTCTTCTTTCTGACGTACTCGTAATGAGACT
TGCTGAGTGTTGTCTTCTGTTTCTTCATCGCTGGCGTCTCCTGTTTTGAA
ATAATCGTCTTCTGGGTCAAAGACTTCTTCTTCGTTTCCTTGAAGAGGTA
ATTCTTCAATTTTCTCTGGGTCAGCCTGTTTGGATGGTTCTGTTGATTTA
ACTTCTTCACCTCTCTTCATAATGCGAAAAGTTGTTTGTTGGGCAGGTTG
CTTCTGATTGGCTGACGGTGCAAGAAGTGCACCAGGCATGATCAACCTCA
GTTTTGTACTATCCCACCAACACANGTTGCTTCTGATTGGCTGACGGTGC
AAGAAGTGCACCAGGCATGATCAACCTCTGTTTTGTACTATCCCACCAAC
ACATTTGCAGCATGTCATTTCGATCCTTCAACAATTCTAAGAGTAGATTT
TTCGCTTGTTGAAAATGGAGCACGCCACCAATTTGCTTGAAAATCTTGGA
TTGAGTTGTCTGCTGCTTGACATTAAGAAACTTTCGAAACAAGTAAACGA
TATCTTTACCGAAACCATCAATTCCTTGTTGTAGGTTGGCCAGCACGACA
AGATATAAGCATAACAAACGTGAGATCTTCAACATACTTTCATTGCTTTG
CCTGTCTTCGAATAGAGAGAGCAAAGTTTTGAATATGCCATCAGGATTAG
TCAGCATCTCACAAAATTGCTTGATAAAAGATACAATTTTGTCCCATTCT
TCTTTTTTCTTTCGTAGGTTTGNTAGTGTTAAAACGATCTAAACATCTAA
TCATTATTTACATAAAAACATTCACAATATACATATAATATATAATCAAG
CAATCCTTAAAATATCAGAATCATACAATGTTCTCATATAGAAATATCTT
TTCTTAAATACCAAATCTTTTTGAGTCTATACAATGCGGTAACCGATTAC
AACTCAAAGAACACAAAACTTATGATCAAAATCAAAACAAAAACCGTGAA
TGACTAAAAAGAACGAAATCAAAAAGTGTGATGTGGTGTGACCAAAATGG
ACAAAAAATCGACAAAAAAATCTTTAAAAACATATTAAAATAAAGACGAA
AAAAGATCTTAAAAAGCTAAAAAACATGAAAAGTAAAATTAAAAAACTGC
TGCAAATCAACACCATCTGAATATGATTAAAAAACCAATGGGGAAATTTG
GTTTCATCGCCAAAATCTACAGATTCTCAAAGAATCACCCAAAGCATCAA
AAACAATCAAATGTGAATGAGATGAGAATCACCATATCGTTCCAATTAAA
AAAAAACAAGAAAAAATTTGACCATCCATGCTTAATGATCGTTTAAAACG
GTACAGTAATCGGGGAAAACCAAGGATTAGCACAGTAATTTCTCCACCAA
ATATGCAAAATAACTGTTTATCATACCATACACCAAGTTCAACGTCGTTT
GTTTTGAGATTTGGAGGCTTTCAAATTCTTCTTCTTACGACTTTCAATGT
TGGTGAACTCGTTTTCTTCTTCGTGTAATTTTCGCTCTTCTTCCATTTCT
GAAATAAGGACGGTCATCAAAATTAACATTTTTTTAGACGGCCGGTATGA
CAGGACGACGGTAAATTAAAAATTTCTACTTAAGGATTAAAGAAGCAATT
ATTGACGTCAAAAGAAGGCATGACTTTAAAAAGTCAACATTTTGCAGACT
CTGGTTATAAGCGATAAATTCGGTCTTAGAGTAGAGGATATAGATAAAGC
GAGCTCTCGTTAGAATTTTAAAACAACGGTGAAACAAAACCAGGAAGCAC
TGACATTGAAATTTAGTTCTCACTCACCTAAGTATTTGCATCTTCGAACT
ATATCATCAACAAGCTGTCTCAAATCATCAGAATGCAAAATGACAGGTTT
GGCCATCTTGCACTGGATGCTATATCTAAACAGAAGCGTTTCCATTTCAT
GATCACCACCACTTATATCAAGCTGAATATAAGTTTCTTTGGCGTTTTCA
AAATCACTCTTCATCTGTTCATGTTTTTCGTATAAACAAGCTTGGATTTG
ATGTTCTCTACTGGAGATGTGTTCTCGTGTTTTACCCCCTTGGACATTAC
AAACGATACAGGTGTCATTCCGATCAAAGTGTTCCTCAATGAAAGCCTCG
ACAGCTACTTCTTCTCGTCTCATCTTCAGCATGAGTCGTTTGTGATGCCA
CTTTAGAAACCAATGGTGAATCATGAGGCCAGCCCAATACTCGGTCATCT
TCTGCAAAGCTGACTTTCGTTTTTCTCTTCTCTTTTGAACAAATGCTCGC
CATTTGTCACAGATATCACGACTGATCATTCGCTGTCTGGCTTCTTCTTC
TTTCTGACGTACTCGTAATGAGACTTGCTGAGTGTTGTCTTCTGTTTCTT
CATCGCTGGCGTCTCCTGTTTTGAAATAATCGTCTTCTGGGTCAAAGACT
TCTTCTTCGTTTCCTTGAAGAGGTAATTCTTCAATTTTCTCTGGGTCAGC
CTGTTTGGATGGTTCTGTTGATTTAACTTCTTCACCTCTCTTCATAATAC
GAAAAGTTGTTTGTTGGGCAGGTTGCTTCTGATTGGCTGACGGTGCAAGA
AGTGCACCAGGCATGATCAACCTCTGTTTTGTACTATCCCACCAACACAT
TTGCAGCATGTCATTTCGATCCTTCAACAATTCTAAGAGTAGATTTTTCG
CTTGTTGAAAATGGAGCACGCCACCAATTTGCTTGAAAATCTTGGATTGA
GTTGTCTGCTGCTTGACATTAAGAAACTTTCGAAACAAGTAAACGATATC
TTTACCGAAACCATCAATTCCTTGTTGTAGGTTGGCCAGCACGACAAGAT
ATAAGCATAACAAACGTGAGATCTTCAACATACTTTCATTGCTTTGCCTG
TCTTCGAATAGAGAGAGCAAAGTTTTGAATATGCCATCAGGATTAGTCAG
CATCTCACAAAATTGCTTGATAAAAGATACAATTTTGTCCCATTCTTCTT
TTTTCTTTCGTAGGTTTGCCACAGCTAAGGAGGCTTTGTGGTTGTAAATG
AAATCCCATTCTTCCATTTGCACAGCGTATGAGCGTGGAACACAAAAAGA
AAATGGGCGACCAGGTGGTTGAGTAGCAGAAAAACTGGCGAAAAGTAGAA
TGATTGGAACTTCCAGCATATCACAGAAGGTATCCACATTAGCATTGCTT
TTCCTCAAAACTTTAAGAGTCGAGTAAAAGAAATTCTTGACATGAGAATC
ATAATACAAGGTTTCAAGGCCTTGGTTGTGGACTTTGAACACCTCTTGAA
TGGGCAGCCGGTCCATCCGTCGGTCGAGACGTAACTCATCGATCAGGGGG
TTGTTGGGGTCCATGAGGTAGGAGATGTGGTTTAATCCGATGTAGAGGTT
GATATCAACTTTTCGGTCATTGAGCCTTTCACTCCATTCGTGACGCATGA
TCCCCTCCAAGCTTTTCTTTGCTACGTGTGGAATGGTAGCCATTTGCTCA
CTGATTTGCGTCTTGATAATGTGATAAAACGGTTTGTAACATTGAAGTAG
TCTGTAAAGCATCCAGAGTTCTTCTGGACGTTTCGGTTGCATCCATTTAG
AGTGAGGCTCAGTCATTTCTGAAGACAATTGCCGATAAGTGGTAGAGCAA
ACTCCACTGACAGAGAGGCTTCCCAGTAAAGCTCTCAGTGCACGAACGAA
TGAGTCTGATGTAGGAGGTTCATGGAGACTGCGGCAATGTCGATCGGAAC
AGTGGTTGGGCACTTGACATATCATATTGGTGTTAACTTCTTGGGTGACA
AGTTGGCGAAAGTTGAAAATAACTGCTTTGAAGATAGACAGAAGAATCTT
TGCTGCAATTTCCATTGCTTTCACCTTGGTGATTTTTCCAGATGGTAAGG
ATGAAGGCATACTGCCAAGCTTGTAGTAATACTTCAAGGAAGACTGTTCG
AACACCAGATAATCTCGACCACTCCTACCAAATCCGATCTTTTCCAAGGT
TTCGTTGACAAAAGTCTTGTCTGTGCAAGCATTAGCTAGATTGGCGACCA
AATCAAAGATGGATTGAACCAAACCATAGAACTTTTTATAAGATTCATAC
ATGTTCTTGAAGACACCATTCCTGTTGACTTTATCGAAGGTAATCAGCAA
TTTGAAAACCACTAACTGCCCGACGGGGTCTTTCTCAAACCCTTTGATCG
CATCAAAAAGGTATTTGGCTTCTTTGGTTAGAAAGGCGTAGCAGTAATAA
GCTTCAGCTTTGAGTGAGAGACTCGTGACATCATTGATCAGGCTAAAAAC
TGATGCAAAGAGTTCGATCAATTCTTCCTTTGCAACATCCAACGGTTTCA
AAGTGTACTCTTTGAAAGCTAAGATAAGATAACTTAACTTCTCATCAATG
TTAACAGCAATTTTGGCAGCTTCAACATAGTTGTGTTGATCTTTGTACAA
TCTGGCTAATTGCTGCATCATTTTGTGCTCTTGGTAAAGCTGCACCAAAT
CATCTAACATATCATCTCTGGATCGGAGATACGAGATTTGGAAATTCAGT
GTTCCAAACTTCAAGATTTGACGAATGGTTTGAATATTGTTGGAATCTTC
GTAGAACCTCAATGCTTTTGCCATCAATTCAGAACTGTCAACTTCGTTCA
AGGAGTGTTGTTGTTGGTATTCCAACGCTTCGATGAATTTGTTTTCAGAC
TTGAGGAGAGACATGACTGAACGATGGTTGTTGTCTGCTTTGTAACATCG
GATGGCATCTTCTTTCTTCCCTGCTTTCTTGTACAGTCTAGCTGCATCTC
CGAACTGGAAAAAAAGTACGATAGTATACTACAATATTAAAGACTCGCTG
TATAACTTAGTACTAAACAGCAGCAGTTAATAAGATAAAATCTAGTTGAA
ATCGTAGGGAAACAAAAGCATAAACCTAGAAAAAATACCTTGGATTGTTT
TTCGTAGAGCAAAGCGAGAAAATCGTTAGCATGTGCATTTTGTAATGACG
TCACGGCATCTCCCACCAGACCACATTTCAAGAATGACAAAGCACAGATT
TTGAAACCGTTCAAGATGGTTGTTTTGGCGATTTTCCCTTTCTTCGAATC
CCAACCATCTTTAGCCTTACGGTAAGCTAATTCGAATTTCAATTTGGCTT
GACACTTCTCTCTCAATTGGTCATTATCAGCTTTTATAGCACACTTCATG
GCAAGTTTCCAGAGGCCTTTGGTGAAGAAATATTTGCCTTGTTTATCCCA
TTGTTCCTCAGAAGACTGCTCAGCGAAATGGTGATCACGAACAGCTCCAT
CTTCAAGTTTGGCAACATCCACCAACTTTTTCTTAACTAGGAAATCAAAC
ATAGGTGCTCTTTTCTTCTTATCTTCGTCAAAGATCCAAACATTAACACG
AGCTCTGGTGACAGCAGTGTATAACTTCTTGAGCTCGGAATTCAATAGCT
TGTGTTTGTTGTAGTCAAAGTCCAGTGGACGTGATGAGTAATCAACATCG
TTCGGAATGACTTGTAAACTTGAATCACTTTCAGTGACATCTACTTCGAT
TTCGTTGGATTTGGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004135-exon-sc0000039-1575043694:577545..578267 | TCONS_00004135-exon-sc0000039-1575043694:577545..578267 | Clytia hemisphaerica | exon |
| TCONS_00004135-exon-sc0000039-1575043694:572300..575219 | TCONS_00004135-exon-sc0000039-1575043694:572300..575219 | Clytia hemisphaerica | exon |
| TCONS_00004135-exon-sc0000039-1510915933:577545..578267 | TCONS_00004135-exon-sc0000039-1510915933:577545..578267 | Clytia hemisphaerica | exon |
| TCONS_00004135-exon-sc0000039-1510915933:572300..575219 | TCONS_00004135-exon-sc0000039-1510915933:572300..575219 | Clytia hemisphaerica | exon |
| TCONS_00004135-exon-sc0000039-1491911889:577545..578267 | TCONS_00004135-exon-sc0000039-1491911889:577545..578267 | Clytia hemisphaerica | exon |
| TCONS_00004135-exon-sc0000039-1491911889:572300..575219 | TCONS_00004135-exon-sc0000039-1491911889:572300..575219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:572300..578267 - |
Blast
BLAST of TCONS_00004135 vs. Swiss-Prot (Human)
Match: TRNK1 (TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4) HSP 1 Score: 87.0409 bits (214), Expect = 6.486e-17 Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = -1
Query: 3266 VDVTESDSSLQVIPNDVDYSS--RPLDFDYNKHKLLNSELKKLYTAVTRARVNVWIFDEDKKKRAPMFD-FXXXXXXXXXXXLEDGAVRDHHFAEQSSEEQWDKQGKYFFTKGLWKLAMKC 3619
D E + L +P D SS R L + +KLLN ELK+LYTA+TRARVN+WIFDE+++KRAP F F+ + + V E+ D F + S+ +W QG Y+ WK+A KC
Sbjct: 1601 TDSREENRPLVEVPLDKPGSSQGRSLMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKC 1721
The following BLAST results are available for this feature:
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