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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004132 ID=TCONS_00004132|Name=TCONS_00004132|organism=Clytia hemisphaerica|type=transcript|length=4717bp
ggggggggggggtcttttgaataactaattactcaaGCAGAAATATATTT
AATGATAACGTCATTTTGAAATCATTTAATAATTAtaccttttaattttt
tggtgCGCTATTGAGGGAAATTTTAGAAAGACAATGCAGTTTCCATTGTT
TGTCAAAGAGGCACTAAATTTTCTAGTTTTTTCCACTACTAAgactgttt
ttaccaaaattttactGATTGCAGGAGGAGCAACGTCAGAATCCTGTTTT
TCTGCAAATATAGCCAAAAAATATAAGTTTTACAACAATTATATGCTAAG
CCAGCAAAAAAATAATGCAAACATAGTGTCCTCCCTCTTTGTAAaggggg
attctgattttgcCCCAATTTTGGAGGTATGGGGGAAAATAAAGAGGGTG
GAAAactaaaaaatttggaaattttgattgggggaacttcactgatctca
aggtAATCTCGTGTAGAAGACCTGtttaaagcaataaaatcagcaaaccT
TACTTAAATCAACCTCAATTTTTCCATaaaacttcattttcaaaagcagt
ttcaAGGCATTATTTACAAGATTTCCaaaactttaaacttgatttaaggc
atttCTGGGCATTTTTAGAACGCAAAAATAAGGGGGGAATTGAGAACAAT
TTGGATTTTTAGTagggggaaccaacccaggaaGACACTATGGCCAAACC
AGCAAAATCAAAGTCATATGTAAATTACTTGCAATAGAGATTTTGTTATA
CTGCTCATTCAGCATtttattaattaaaaaaattccaaaaatagtAAGAa
caattgcaatttttttctgaacacACACACTGAGTGAGTTTGGATAAGAA
TTTATTGTAAACTTTCTAACTTTTGTATGTTACACAACAGAATGATAAAC
AAAATATCccagaaaaattcaattttatagTACTTTTTGGCTACCCTTCT
CACCCTTTTTTAAGATACCAGCAATAAAAGAATTAATGCCAATTCTTTGC
TCAGCAGTCAGaaaggaaaaattttctttcaatgaGCTATTCTGACCTTT
CTATTATTTCTATCTTAAAAGAAGGAATCACAGGGGTTTTTGACAATTGG
ACCAACTAATGGTATCTATTGGAAAGAGGACTTGGAACACATATTTGGCA
TAAATGTCTCTTTATTGAAAGGTACCAAAAGTTGCCTAAAGTTATTTTTG
TGTGTCCTGGAAAAAGTCCTTCTTTTATTCCTTATGTATGTCTGTGATTT
TAGTATTGAGCCCCTTATCTTACCAGGGACTTCATCTCCTTGGCAAcagg
ttttcttttaaaatactttcattaaagggacataacagtacttgcgaaat
ttgtaaacaaactgtatgcagcggatacaaaatcaaaacaaatgtcacat
gtcaaaataaaaaatcaaaccaaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgctaatttttattgttcaattgttttacaagtttgttttggacacg
tgattttcattgttctctttaatgacacgtggttcgcgcaatgtttacat
ttttactactgtaatgtccctttaatagTCTTTCAAGGAAGGaattgttt
cattgtttttcattATGAAATTGCTCATTCCAGGTTcttattcttcttct
tttttagagAGTATGGCAACAAAAATTGCTTTTAACTCAGACGATAAAAT
AGTCGATCAAAATGCATGTGTGGAACAAATCAATGTCAAAGatctggaaa
aatattttgatgtagACAAAATTgtgcaatatattttacaagGAAAATAT
TCGGTTATTGCATTGCAGTTTCCAGATGAATTGATGACTTACTCAACTTC
TATTGCATCTGAATTAAAATCTAAAACAGAAGCTCAAATATTTGTTTTAG
CTGACACATCTTACGGAAGTTGTTGCGTTGATGAAGTTGCTGCAAGTCat
tacaatgctgacttaaTAATCCATTTTGGACAAAGCTGCCTATCTAATAC
AGGAAAAATTGCTGTTTATTATTCTTTTGGAAAAgaattgattgacattg
atgtgctTCTGTCAAAATTAGGAGAAAGATTCACACCAGACGACAAAATA
TTGGTTCTATACGATGTTCAATATGATTATCCTATTAACTCTAACCTGGA
TGTTGTtaagaaaaactttcagaatGCTTCAATCTCGTGTTTGAATTTGT
GCAACTCAAGTGAGATTGCTGATAATGTTACCATCAAATTTGGTCGTGTA
TACACCTTGACACACTCTATTGAGGAATACACCTTAGTTTTTATTGGATC
AAATGAAAGAACATTATATAACACAATCGTCTCTTATCCTCGAAATACTG
TTTACAGTTATGATGTAAAACTTGAAAAACTGCAAAAAGAGGATTTAAAC
GTGAACAAGTATTTAATGCGAAGAttttatttgattgaaaaagCCAAGGA
TGCACAGATAGTTGGCATTGTCATGGGTACTCTTGGAGTTGCCAGATACA
ATGATATGGTCAACAGGTTGAAATCCATTTTAAAACAATCTGGAAAGaaa
ttttacacctttattattGGAAAGATAAACCCTGCTAAATTAGCAAATTT
CATGGAAATTGATATGTTTGTGCTGGTAGCTTGTCCAGAAAACAGTTTAT
TAGATTCGAAAGAGTTTTATAAACCTATCATCACGCCATATGAAATGGAG
ATGGCTTGTTTATCTGGACGTTCTTGGTCTGGTGATGTTGTGACTGATTT
TCGAGAATTACTTTCGGGATCAAAACGATTTGTTGAACTTGACGGAGAAA
ATGAcggaaaagataaaaaaccaGAATATTCTCTCATTACTGGGAAACTT
CGAAATAATAACACCATGTCAGAGCCGTTATGTACTGATGTTGCAACACG
TAATGAATCGAACAGTCTAGTTGCGTCTTCTGCAAGAAATGCAAGTGAAT
ATTTAGCATCAAGAACATGGCAGGGACTTCAAATCGACTCTGGTAAAACT
GAAGTTAAACTTGCTGTTGAAGGACGATCTGGAATAGCGATGAAttataa
aaacgaaaaagagTAGATTTGGCCTTGAAGAAATTGTAAACAATTTTTAT
ACTGAAATGAATAATAATGATCGAATAATTATGTATGCTTTTCTGTTTGT
TATTGTAGTCTCTTCCACAATCCGTTGCTTCCACATTGTATTTTGATAAT
AGAAACCTTTCGGGAAAACCATACTTTGCAATACTTTGAAAGAGCCTTCG
ATTTCAACGATAACCTTGCTATTGATGTTTAAAAGAGAAGTTACATCTTG
AACATTGCTTAAATATTCTTCGTTTTCGTTTTTCAGCtcaatataataat
aatatgagAAAGGCGCAATCTCAAACCGATCTAGTATCGGACAAAAAGAA
GATCGACCATGAAGTTAAACAAGTGCAAAAACAGATCGCCCTTGCTGAGA
AAACCAATGCTAATTTATTAAAAGACTTCACCAATATTGTTGTTGACCTC
AATCGATTGTTGTCAAGGCAGCACGAGCTatgtttgaattttgaaagcTT
GGCACGGGAAGAGTCGCCAGTTCTTGAGAACAGTATCAGCCAAGTATACA
CTTCTCTGAACACACTTCAAATGTCTCTCAAGTTGCACATTGATATTGTA
CAAGAAAAAATTGTGAAACGGATAAGTGAAGAAACTAAGAGTTGTCGCGA
CGCCAGGCAAAAGCTTGCACAATGCTCAGACGTCAAAAAGCAGCGTACAT
CAGCTGCTAAAATCCTTCAGAAATCGAAGAAGTTGAACGAAAAAGAACGT
ACCAAACAGACGAACGTGTTATTACAAACCACGAAACAGTTGAACGAGTT
AACCACTCAAATGGAGATCTTTGAACGTGACAAAATAGAGAGGATGAAGC
GGAATTTGAAAACGTATATTCATAGTTGTTTAGCGTACCATGTAAAAGCT
GTGGAGAATTATACCAAAGCCTACCAAGCTGTTTCTAGCATCGATGTGGA
AAAACATGTTGAACATTTCACTAATAATTTGTTGTATCCTGAAAAGGAAG
AACGTGCAAAATTTGTTCGATGGAATTCCTTTAGCTCTGTAGCCTAACAA
ATCATTTGATTCAGTCTTAGGTCTTGGAGCTCTTTATTTTCCCGTTCTCA
GTCACTAAGGCGTTTGTTTCTAAATATTTAAGGGGGGGTTAGAATATCGT
AGGATAAATTGAGCGTGTTCGGGAATACATGTTATTTTAAGAGGTATGaa
ccccctaggtttattttaTCCTCcttatatacccatcccccttCCTTAGT
GAAATCCCATCCccctttttttacagaaaatctgttttgaagaaaacttg
CTCTAAGCTCCTAAAGTATGATCAAAGAGTACAAAATGTAAACAGTCACG
TGTGCAACAATTTCACAATATAACTAGGGTGTTTATTAACatgattttgt
gttttggtgGTATATGTTTTTACTTCGAAACAGACTGTAACCATTTGTAT
ATGATTaaattgataaaatttctaACCCACCTTTCTTATTTGATCCCCCc
agttttttgacaaatcttgATACCCCCTATccaaaaaaaatacataaatt
gGCACCCTCTCTATTTAAAAGGGGTTGCAAACTATGAGGAGGCTTATATC
ATGAGCAAAATACTAAGAAACCTTCAAATCAACTTGGAAAACATTAGAAG
TCTTTTGTGAAATTCAA Run BLAST on NCBI transcript from alignment at sc0000039:467181..471897- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004132 ID=TCONS_00004132|Name=TCONS_00004132|organism=Clytia hemisphaerica|type=transcript|length=4717bp|location=Sequence derived from alignment at sc0000039:467181..471897- (Clytia hemisphaerica)
GGGGGGGGGGGGTCTTTTGAATAACTAATTACTCAAGCAGAAATATATTT
AATGATAACGTCATTTTGAAATCATTTAATAATTATACCTTTTAATTTTT
TGGTGCGCTATTGAGGGAAATTTTAGAAAGACAATGCAGTTTCCATTGTT
TGTCAAAGAGGCACTAAATTTTCTAGTTTTTTCCACTACTAAGACTGTTT
TTACCAAAATTTTACTGATTGCAGGAGGAGCAACGTCAGAATCCTGTTTT
TCTGCAAATATAGCCAAAAAATATAAGTTTTACAACAATTATATGCTAAG
CCAGCAAAAAAATAATGCAAACATAGTGTCCTCCCTCTTTGTAAAGGGGG
ATTCTGATTTTGCCCCAATTTTGGAGGTATGGGGGAAAATAAAGAGGGTG
GAAAACTAAAAAATTTGGAAATTTTGATTGGGGGAACTTCACTGATCTCA
AGGTAATCTCGTGTAGAAGACCTGTTTAAAGCAATAAAATCAGCAAACCT
TACTTAAATCAACCTCAATTTTTCCATAAAACTTCATTTTCAAAAGCAGT
TTCAAGGCATTATTTACAAGATTTCCAAAACTTTAAACTTGATTTAAGGC
ATTTCTGGGCATTTTTAGAACGCAAAAATAAGGGGGGAATTGAGAACAAT
TTGGATTTTTAGTAGGGGGAACCAACCCAGGAAGACACTATGGCCAAACC
AGCAAAATCAAAGTCATATGTAAATTACTTGCAATAGAGATTTTGTTATA
CTGCTCATTCAGCATTTTATTAATTAAAAAAATTCCAAAAATAGTAAGAA
CAATTGCAATTTTTTTCTGAACACACACACTGAGTGAGTTTGGATAAGAA
TTTATTGTAAACTTTCTAACTTTTGTATGTTACACAACAGAATGATAAAC
AAAATATCCCAGAAAAATTCAATTTTATAGTACTTTTTGGCTACCCTTCT
CACCCTTTTTTAAGATACCAGCAATAAAAGAATTAATGCCAATTCTTTGC
TCAGCAGTCAGAAAGGAAAAATTTTCTTTCAATGAGCTATTCTGACCTTT
CTATTATTTCTATCTTAAAAGAAGGAATCACAGGGGTTTTTGACAATTGG
ACCAACTAATGGTATCTATTGGAAAGAGGACTTGGAACACATATTTGGCA
TAAATGTCTCTTTATTGAAAGGTACCAAAAGTTGCCTAAAGTTATTTTTG
TGTGTCCTGGAAAAAGTCCTTCTTTTATTCCTTATGTATGTCTGTGATTT
TAGTATTGAGCCCCTTATCTTACCAGGGACTTCATCTCCTTGGCAACAGG
TTTTCTTTTAAAATACTTTCATTAAAGGGACATAACAGTACTTGCGAAAT
TTGTAAACAAACTGTATGCAGCGGATACAAAATCAAAACAAATGTCACAT
GTCAAAATAAAAAATCAAACCAAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCTAATTTTTATTGTTCAATTGTTTTACAAGTTTGTTTTGGACACG
TGATTTTCATTGTTCTCTTTAATGACACGTGGTTCGCGCAATGTTTACAT
TTTTACTACTGTAATGTCCCTTTAATAGTCTTTCAAGGAAGGAATTGTTT
CATTGTTTTTCATTATGAAATTGCTCATTCCAGGTTCTTATTCTTCTTCT
TTTTTAGAGAGTATGGCAACAAAAATTGCTTTTAACTCAGACGATAAAAT
AGTCGATCAAAATGCATGTGTGGAACAAATCAATGTCAAAGATCTGGAAA
AATATTTTGATGTAGACAAAATTGTGCAATATATTTTACAAGGAAAATAT
TCGGTTATTGCATTGCAGTTTCCAGATGAATTGATGACTTACTCAACTTC
TATTGCATCTGAATTAAAATCTAAAACAGAAGCTCAAATATTTGTTTTAG
CTGACACATCTTACGGAAGTTGTTGCGTTGATGAAGTTGCTGCAAGTCAT
TACAATGCTGACTTAATAATCCATTTTGGACAAAGCTGCCTATCTAATAC
AGGAAAAATTGCTGTTTATTATTCTTTTGGAAAAGAATTGATTGACATTG
ATGTGCTTCTGTCAAAATTAGGAGAAAGATTCACACCAGACGACAAAATA
TTGGTTCTATACGATGTTCAATATGATTATCCTATTAACTCTAACCTGGA
TGTTGTTAAGAAAAACTTTCAGAATGCTTCAATCTCGTGTTTGAATTTGT
GCAACTCAAGTGAGATTGCTGATAATGTTACCATCAAATTTGGTCGTGTA
TACACCTTGACACACTCTATTGAGGAATACACCTTAGTTTTTATTGGATC
AAATGAAAGAACATTATATAACACAATCGTCTCTTATCCTCGAAATACTG
TTTACAGTTATGATGTAAAACTTGAAAAACTGCAAAAAGAGGATTTAAAC
GTGAACAAGTATTTAATGCGAAGATTTTATTTGATTGAAAAAGCCAAGGA
TGCACAGATAGTTGGCATTGTCATGGGTACTCTTGGAGTTGCCAGATACA
ATGATATGGTCAACAGGTTGAAATCCATTTTAAAACAATCTGGAAAGAAA
TTTTACACCTTTATTATTGGAAAGATAAACCCTGCTAAATTAGCAAATTT
CATGGAAATTGATATGTTTGTGCTGGTAGCTTGTCCAGAAAACAGTTTAT
TAGATTCGAAAGAGTTTTATAAACCTATCATCACGCCATATGAAATGGAG
ATGGCTTGTTTATCTGGACGTTCTTGGTCTGGTGATGTTGTGACTGATTT
TCGAGAATTACTTTCGGGATCAAAACGATTTGTTGAACTTGACGGAGAAA
ATGACGGAAAAGATAAAAAACCAGAATATTCTCTCATTACTGGGAAACTT
CGAAATAATAACACCATGTCAGAGCCGTTATGTACTGATGTTGCAACACG
TAATGAATCGAACAGTCTAGTTGCGTCTTCTGCAAGAAATGCAAGTGAAT
ATTTAGCATCAAGAACATGGCAGGGACTTCAAATCGACTCTGGTAAAACT
GAAGTTAAACTTGCTGTTGAAGGACGATCTGGAATAGCGATGAATTATAA
AAACGAAAAAGAGTAGATTTGGCCTTGAAGAAATTGTAAACAATTTTTAT
ACTGAAATGAATAATAATGATCGAATAATTATGTATGCTTTTCTGTTTGT
TATTGTAGTCTCTTCCACAATCCGTTGCTTCCACATTGTATTTTGATAAT
AGAAACCTTTCGGGAAAACCATACTTTGCAATACTTTGAAAGAGCCTTCG
ATTTCAACGATAACCTTGCTATTGATGTTTAAAAGAGAAGTTACATCTTG
AACATTGCTTAAATATTCTTCGTTTTCGTTTTTCAGCTCAATATAATAAT
AATATGAGAAAGGCGCAATCTCAAACCGATCTAGTATCGGACAAAAAGAA
GATCGACCATGAAGTTAAACAAGTGCAAAAACAGATCGCCCTTGCTGAGA
AAACCAATGCTAATTTATTAAAAGACTTCACCAATATTGTTGTTGACCTC
AATCGATTGTTGTCAAGGCAGCACGAGCTATGTTTGAATTTTGAAAGCTT
GGCACGGGAAGAGTCGCCAGTTCTTGAGAACAGTATCAGCCAAGTATACA
CTTCTCTGAACACACTTCAAATGTCTCTCAAGTTGCACATTGATATTGTA
CAAGAAAAAATTGTGAAACGGATAAGTGAAGAAACTAAGAGTTGTCGCGA
CGCCAGGCAAAAGCTTGCACAATGCTCAGACGTCAAAAAGCAGCGTACAT
CAGCTGCTAAAATCCTTCAGAAATCGAAGAAGTTGAACGAAAAAGAACGT
ACCAAACAGACGAACGTGTTATTACAAACCACGAAACAGTTGAACGAGTT
AACCACTCAAATGGAGATCTTTGAACGTGACAAAATAGAGAGGATGAAGC
GGAATTTGAAAACGTATATTCATAGTTGTTTAGCGTACCATGTAAAAGCT
GTGGAGAATTATACCAAAGCCTACCAAGCTGTTTCTAGCATCGATGTGGA
AAAACATGTTGAACATTTCACTAATAATTTGTTGTATCCTGAAAAGGAAG
AACGTGCAAAATTTGTTCGATGGAATTCCTTTAGCTCTGTAGCCTAACAA
ATCATTTGATTCAGTCTTAGGTCTTGGAGCTCTTTATTTTCCCGTTCTCA
GTCACTAAGGCGTTTGTTTCTAAATATTTAAGGGGGGGTTAGAATATCGT
AGGATAAATTGAGCGTGTTCGGGAATACATGTTATTTTAAGAGGTATGAA
CCCCCTAGGTTTATTTTATCCTCCTTATATACCCATCCCCCTTCCTTAGT
GAAATCCCATCCCCCTTTTTTTACAGAAAATCTGTTTTGAAGAAAACTTG
CTCTAAGCTCCTAAAGTATGATCAAAGAGTACAAAATGTAAACAGTCACG
TGTGCAACAATTTCACAATATAACTAGGGTGTTTATTAACATGATTTTGT
GTTTTGGTGGTATATGTTTTTACTTCGAAACAGACTGTAACCATTTGTAT
ATGATTAAATTGATAAAATTTCTAACCCACCTTTCTTATTTGATCCCCCC
AGTTTTTTGACAAATCTTGATACCCCCTATCCAAAAAAAATACATAAATT
GGCACCCTCTCTATTTAAAAGGGGTTGCAAACTATGAGGAGGCTTATATC
ATGAGCAAAATACTAAGAAACCTTCAAATCAACTTGGAAAACATTAGAAG
TCTTTTGTGAAATTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004132-exon-sc0000039-1575043694:467181..471897 | TCONS_00004132-exon-sc0000039-1575043694:467181..471897 | Clytia hemisphaerica | exon |
| TCONS_00004132-exon-sc0000039-1510915933:467181..471897 | TCONS_00004132-exon-sc0000039-1510915933:467181..471897 | Clytia hemisphaerica | exon |
| TCONS_00004132-exon-sc0000039-1491911889:467181..471897 | TCONS_00004132-exon-sc0000039-1491911889:467181..471897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:467181..471897 - |
Blast
BLAST of TCONS_00004132 vs. Swiss-Prot (Human)
Match: DPH2 (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 OS=Homo sapiens GN=DPH2 PE=1 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 8.750e-65 Identity = 141/470 (30.00%), Postives = 247/470 (52.55%), Query Frame = 1
Query: 1735 VKDLEKYFDVDKIVQYILQGKYSVIALQFPDELMTYSTSIASELKSKTEAQIFVLADTSYGSCCVDEVAASHYNADLIIHFGQSCLSNTGK-IAVYYSFGKELIDIDVLLSKLGERFTPDDK--ILVLYDVQYDYPINSNLDVVKKNFQNASISCLNLCNS--SEIADNVTI-KFGRVYTLTHS--IEEYTLVFIGSNERT--------LYNTIVSY-PRNTVYSYDVKLEKLQKEDLNVNKYLMRRFYLIEKAKDAQIVGIVMGTLGVARYNDMVNRLKSILKQSGKKFYTFIIGKINPAKLANFMEIDMFVLVACPENSLLD--SKEFYKPIITPYEMEMACLSGRSWSG--DVVTDFRELLSGSKRFVELDGENDGKDKKPEYSLITGKLRNNNTMSEPLCTDVATRNESNSLVASS--------ARNASEYLASRTWQGLQIDSGKTEVKLAVEGRSGIAMNYKNE 3057
+ DL+ ++++++ ++ +ALQFPD+L+ + ++A+ L+ T +++F+L DT+YGSCCVD + A A +IHFG +CLS + + V + + + ++ L K E PD K +++L + + + + +++ + + +S S + + + +FGR + L +EEY ++G ++ + L ++ + P S K Q E + RR YL+E+A+DA++VG++ GTLGVA++ + + L+++ + +GK+ Y +G+ PAKLANF E+D+FVL+ACP +L S F++PI+ P E+E AC G +T + +LL GS V L + P+ SLITG LR + N+ SL + + A+ +L+SR+WQGL+ G+T V AV GR GIA+ Y++E
Sbjct: 26 LPDLDGVYELERVAGFVRDLGCERVALQFPDQLLGDAVAVAARLEETTGSKMFILGDTAYGSCCVDVLGAEQAGAQALIHFGPACLSPPARPLPVAFVLRQRSVALE-LCVKAFEAQNPDPKAPVVLLSEPACAHALEALATLLRPRYLDLLVSSPAFPQPVGSLSPEPMPLERFGRRFPLAPGRRLEEYGAFYVGGSKASPDPDLDPDLSRLLLGWAPGQPFSSCCPDTGKTQDEGARAGRLRARRRYLVERARDARVVGLLAGTLGVAQHREALAHLRNLTQAAGKRSYVLALGRPTPAKLANFPEVDVFVLLACPLGALAPQLSGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYADLLPGSPFHVALPPPESELWETPDVSLITGDLRPPPAWK--------SSNDHGSLALTPRPQLELAESSPAASFLSSRSWQGLEPRLGQTPVTEAVSGRRGIAIAYEDE 486
The following BLAST results are available for this feature:
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