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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004125 ID=TCONS_00004125|Name=TCONS_00004125|organism=Clytia hemisphaerica|type=transcript|length=1059bp
TGATAATGAGAAATTATGATTTAAGTAATTGAAACCAGGTTTCATGATGA
TATCATGTTTATAAAACAAACCAATCAGATTAAAGGTGTGACGTCACCTC
AATTCAAGTGATTTGATTGGTGGAGCAGTTTTTGTGGACTGGGCATGCCT
GACATTCCTGAagtgaaaaaatgaaagttgatCGTTCTGCGCAGATATAA
GAAGCGCgagttaaaaagttttttgaatctGTTGAAACCGCAAGCTAGTG
TTAATCGGTGAAGGAAAGtgaagattttttttgcttttggcGCTAAGGAT
GCATTTGATACAAGAAGAAGATCCATCAAGGGTGGTTTTACAACCGCCAC
CCGCCCCTCGTAAACAATTTCTACAGAAGAACATCGAAGTGTCATCAAGA
GTTCGAaggaaattgaatttcgatttttacgCAGATGATAAGATGAACGA
GCAACCTCCAATGAAACGTCTTCGAATAAATATTCCAACGTTCGATAAAA
TGTTGAATAACAACCAATATGTCAGTGAGAAACATCAGAACTGTACTAAC
AATACACCAACGCAGAACCACAACGTACAGATTGACCATAACGAACCGCT
CTCCCAAATGACAAGGATCTCCAAGCCCTCCAACGTCGAAGAATCATTAT
TGATGTCTGATCTTTCAGATGAATCCTCTTACGAAGATGAACttgaaaac
agtgaaaaaacaaaTAATGAACTTGATACCAGTATTTATTCGACACCTGA
CAAAACACTATTGAGTGTTGCTGATGATAGTCCAGTTGATCACTGACGTT
TGACACAGCTCCAGATATCTGGGAAAATCTAAACGactttttagtatttt
gttccGCGTAATGTATATTTCCAATTTCCCTTAGATGCACATACTTGTGA
GTTTTTCTTActaaaatataatttcaaattattattGTAAGTAGAAGAAT
TTTGTAAATTAACTAATTTGTAATTAATGGAATAAATATCTAAATTATTT
TAATGCTATTTTTCTTACATTAAATTGCAAAACACAGAGGCCATAGTACC
AGTTTTAAC Run BLAST on NCBI transcript from alignment at sc0000039:423428..425323- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004125 ID=TCONS_00004125|Name=TCONS_00004125|organism=Clytia hemisphaerica|type=transcript|length=1896bp|location=Sequence derived from alignment at sc0000039:423428..425323- (Clytia hemisphaerica)
TGATAATGAGAAATTATGATTTAAGTAATTGAAACCAGGTTTCATGATGA
TATCATGTTTATAAAACAAACCAATCAGATTAAAGGTGTGACGTCACCTC
AATTCAAGTGATTTGATTGGTGGAGCAGTTTTTGTGGACTGGGCATGCCT
GACATTCCTGAAGTGAAAAAATGAAAGTTGATCGTTCTGCGCAGATATAA
GAAGCGCGAGTTAAAAAGTTTTTTGAATCTGTTGAAACCGCAAGCTAGTG
TTAATCGGTGAAGGAAAGTGAAGATTTTTTTTGCTTTTGGCGCTAAGGAT
GCATTTGATACAAGAAGAAGATCCATCAAGGGTGGTTTTACAACCGCCAC
CCGCCCCTCGTAAACAATTTCTACAGAAGAACATCGAAGTGTCATCAAGA
GTTCGAAGGAAATTGAATTTCGATTTTTACGCAGATGATAAGATGAACGA
GCAACCTCCAATGAAACGTCTTCGAATAAATATTCCAACGTTCGATAAAA
TGTTGAATAACAACCAATATGTCAGTGAGAAACATCAGAACTGTACTAAC
AATACACCAACGCAGAACCACAACGTACAGATTGACCATAACGAACCGCT
CTCCCAAATGACAAGGATCTCCAAGCCCTCCAACGTCGAAGAATCATTAT
TGATGTCTGATCTTTCAGATGAATCCTCTTACGAAGATGAACTTGAAAAC
AGTGAAAAAACAAATAATGAACTTGATACCAGTATTTATTCGACACCTGA
CAAAACACTATTGAGTGTTGCTGATGATAGTCCAGTTGATCACTGACGTT
GTAGGTGGTGATTATACAAGCATTCTTTTTACACCAGTTTTACTCTGTTT
CATTATATACATGTTCTGTTTCTCTCCTTTTACTTTTTATATACAATCCG
TGCCATAATATATTGGCACTTTTGGCTAATTTACCATTTTTCGAATATTG
AAGTTCGAGCGAGAATGTCAATTTCAGGCCTTCAAATTGATTTCATCGAT
TATTTCGATCTGGGAGGGATTTTTTGGTTTCTAGGCTATATTTCAAGCCC
TACTGGACCATTTTTGAACTTTTGGATCCTTAGATCCTAAGGTCCTCCTA
AGTCTTAAGTCTCATGTTAAAACTCTACCCATTCAACCTACTTTAGAGCA
CTTACAAATCGATTGTGGTTTCAAAACACCCCGGTGAATTTCCCTTTTGT
GCCAAGTATTTTTTCATTAATTGTCGTCCATCCACAACTTTCAATATTAT
CTGAAAGTTTTTACAAACACTAAATTTACATTATTTTGAGAGTGGGAAGA
AAAGGTTTTCACTTAAAAGTCATTAACGATTATCCAAAGGAAAATCGACA
GGCTTAAGCCCGCGCCATGTAATTGAAAGTTGGGGTTTCGTCAATGAATA
TAGAGTCTAAGGAGGCGCAACCAAAAATCTTTACTTTCCAAAAAAGTGGG
GGGTCATGGTCATGGCCCCTGCCCCTCCGGAGGTTTGGGCCCTGCTTATA
CATCTTCTCTTGACAAATGAATGCTTTAATCAAAGTTATCTTTCTAATTG
TAACTAACGTTGGAGTCATGTTTCCCGTATCTTAACAATCATTTGAAAAG
GGGTATTATAATTATTCATCATCAATGTTTATTCTAGTGACACAGCTCCA
GATATCTGGGAAAATCTAAACGACTTTTTAGTATTTTGTTCCGCGTAATG
TATATTTCCAATTTCCCTTAGATGCACATACTTGTGAGTTTTTCTTACTA
AAATATAATTTCAAATTATTATTGTAAGTAGAAGAATTTTGTAAATTAAC
TAATTTGTAATTAATGGAATAAATATCTAAATTATTTTAATGCTATTTTT
CTTACATTAAATTGCAAAACACAGAGGCCATAGTACCAGTTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004125-exon-sc0000039-1575043694:424524..425323 | TCONS_00004125-exon-sc0000039-1575043694:424524..425323 | Clytia hemisphaerica | exon |
| TCONS_00004125-exon-sc0000039-1575043694:423428..423686 | TCONS_00004125-exon-sc0000039-1575043694:423428..423686 | Clytia hemisphaerica | exon |
| TCONS_00004125-exon-sc0000039-1510915933:424524..425323 | TCONS_00004125-exon-sc0000039-1510915933:424524..425323 | Clytia hemisphaerica | exon |
| TCONS_00004125-exon-sc0000039-1510915933:423428..423686 | TCONS_00004125-exon-sc0000039-1510915933:423428..423686 | Clytia hemisphaerica | exon |
| TCONS_00004125-exon-sc0000039-1491911889:424524..425323 | TCONS_00004125-exon-sc0000039-1491911889:424524..425323 | Clytia hemisphaerica | exon |
| TCONS_00004125-exon-sc0000039-1491911889:423428..423686 | TCONS_00004125-exon-sc0000039-1491911889:423428..423686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:423428..425323 - |
Blast
The following BLAST results are available for this feature:
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