TCONS_00004124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004124
Unique NameTCONS_00004124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004124 ID=TCONS_00004124|Name=TCONS_00004124|organism=Clytia hemisphaerica|type=transcript|length=1221bp
ttattttgtatATTACCCCCGGAAAATAATCACATTTACGTCAATGATTG
ATCACGTGTTCCGAAATCATAACAAACTTGTAAAGTTCAAAATAGAAAGC
AGCAAAAACAAGAAGCAAGCATGGCGTCCAGGAGAATTTTGGTTCAACTT
CAAAGAAATGGAGGAAAGTTGTTTAAAACTAATCTTTTAAACAATACATG
CAATCAAGGCATAAGGAAGAATACCATCACCCAAAAGTTTGgGTCAATTG
TTCCAATCTACAATGTGAATTGTCGCAGCTTTACAACAGAAGCTCAGgAC
CCGGGGGTCACTGAACGCTCCTACAAACGTATCAACATTTCACAATCTGA
CAATGATTTCATCAATTCATTTGGGCTTGTAATGAATGAAAACGATGAAG
CCATTTCGGTTGTATTAGGAAATCAGATGCGAAGACAGTTGTGGGAAGGC
TGTCATACTGAAGAGGAGTCTCGCATGATTAAAATGGCAACCCAAAATAT
GAATCATCTCTTCTTCAACAAAAATTTGTCTGAGGAAGAAGATTACTTGA
TAAAGTTATGTAGCTCTGCTCCTGATAGCACCATTTTCCCCTATGTGTTC
AAGTATGATGATACTGCATTCATGCCATATGCCTTCCCTGTGGATTACAT
GACTGATAGAGATGAGGTTACTAAACCTGAGGCTACACAGAATTTTGATA
TGACTGTCGATCCTAAATCCTTTCGTCATTCTGAAATCAGAAAGAAGGCT
GGTATTTTCTATACCTCTGAATCAGACTTCCCTGAAAATTATGACGACGA
ACCACCTTTTCCCAAATCTTCAAATTATGCTTGAGAAGCCAATTATTGCA
TCTCATGGTATATGTACATAGACAAGACTTATATGAGATAAATCTACAAA
ATGCGGATCTCAAAAATTATCTCGCTAATATATTtaagtttttgttattt
ttatcttaaaatttgTGTACATAGAGTTTCGCCCTGTCCTGtctaaattt
tgtaaaaaaaaagtgaaaaagaatttcattcaGCCATTGTCAAAGTCATG
AAAAGGTTTCTTAGTATTTTTGTGAGGTATCTTCTTCAGGGATCTGGGTA
CATGGTGAAGGTGTATATAGATTATATTTATTCTTActctcattattttt
ttgtacatagaTATTTTTGATCTGTATTATTTTGCATTTGGTAGTACAGA
GTAATAAATTATTTTGGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00004124-protein

>TCONS_00004124-protein ID=TCONS_00004124-protein|Name=TCONS_00004124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MASRRILVQLQRNGGKLFKTNLLNNTCNQGIRKNTITQKFGSIVPIYNVN
CRSFTTEAQDPGVTERSYKRINISQSDNDFINSFGLVMNENDEAISVVLG
NQMRRQLWEGCHTEEESRMIKMATQNMNHLFFNKNLSEEEDYLIKLCSSA
PDSTIFPYVFKYDDTAFMPYAFPVDYMTDRDEVTKPEATQNFDMTVDPKS
FRHSEIRKKAGIFYTSESDFPENYDDEPPFPKSSNYA
Run BLAST on NCBI

transcript from alignment at sc0000039:400836..404178-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004124 ID=TCONS_00004124|Name=TCONS_00004124|organism=Clytia hemisphaerica|type=transcript|length=3343bp|location=Sequence derived from alignment at sc0000039:400836..404178- (Clytia hemisphaerica)
TTATTTTGTATATTACCCCCGGAAAATAATCACATTTACGTCAATGATTG
ATCACGTGTTCCGAAATCATAACAAACTTGTAAAGTTCAAAATAGAAAGC
AGCAAAAACAAGAAGCAAGCATGGCGTCCAGGAGAATTTTGGTTCAACTT
CAAAGAAATGGAGGAAAGTTGTTTAAAACTAATCTTTTAAACAATACATG
CAATCAAGGCATAAGGAAGAATACCATCACCCAAAAGTTTGGTAAGACTC
TTTCAAGGAGAGGAGTGACTTTGCCTTTCAAATTAAAAATATATGTGGGT
TTTATCTGAAGCACCTTCCGAATCTTCTTTGAATTTTGCCACTCTGTTTA
AAAAAAGCCAATTTTGCTTCTCTGTTAGTTAGGTTGCAACCCACTGTTGG
CCTTCAACTTTCTTTATGAATGCTACTAAAAATTATGAAATACAAATACT
TCCCATTTAATCATCTTTCTCAAACCTGAAATCTGTAACAATTTTGAGTG
TCACCCTTAATCTACATTCCATCACCTTACATCTAAATTCCCAAAAATTT
TAGATATTGACAAATTTTACCGTCAACTGCTCCAACTTGGGACTTTCTTA
CGCAACATGGGACGGCCATTCCACCACGCCATTTCACCAAACCTCCAAAG
TCATTTTATTTGAGTTCAATGAACCACGTATTAAAAAATACACGATTTCT
CTTTCGCACTGAGTAGGTTTTTAAATCAAAATATGAAAAAAATCCGTAGT
GGAAAACACACGCAAATGTGAGCGTTTGACGTCAATCGCACGGCAAGTTA
CACACTCGCTATTTGTTAATCTCATTGGGCGGTAGGCGGTTAGCACAGAT
GTTTGTCGTAAGCAAAAGTTGGTAATGCAAAGTCTTACAACATTGCAATT
AGCAAACGCAAAAAAAAAACTCCATAATGGCGGCATCATGCGAGAGCAAT
CAGAATACCAAAATAAACAAATGAAGTGAAGTTATCATCAAAAAATAAAA
ATAAAACAAACCTTTAACCTTTCAATAATCCAATTAAACAAAATATTTCA
AATGAATTGATGTTTAAGTTTGAAAACAAGCACCATTTCCACCATATACT
TTTAGAGCAAAAAGCAGAATTTTGCTGAAATCTTCTGCTCTTCCCGGGCA
AATAATTTCTCAGAATATCAGAGAGTCTGGTGCTGAATATATAGTTTAGT
GGGTCAAGCTTGTTTTAGTTCTCTATTTATAGATAAAGCCTGAAAACCTC
ATCTGAGACGGGGGTCATAAACGATCTTTATCTATTTTGAAGTCGTACAA
TCTTTTACTTCTCAAAACCATTTAGATTCAGGTTTTATATATAATAACAA
AACAAAAATTTGTTTCATTAAAGCTATTTTCTTTCAGCGAAATAAGCCTT
TAGTAAATCTTTAAACCCCCAGTTTTATTTCGTTATTTACAATGTGATTT
TATAGCGGGAGTTGGGAACCGGCTAGATTGTGTGATCTGATTGGCTGAAT
GAGCAAACGCGGGACTCGGCCCAGGACTTTTTACCCGCGTTTACAGCAAT
ATTTATTCTTTACGCTTTCGTTTTCAAAATCTGTTGAACATGGATTTTGG
CTTGTGACAATTACCTTGCCTAACATCTGTGTTAGGCGGCGGGCGTTCTC
TAATTCTCCATTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG
CTATCAGTGAAAGTTATTGTGACATGTTATGACAGAAAGTATGATTGATA
AACTTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAAATTTAACAGT
AAGTGAAAATACAGGCCAAAGTCCCATGTTGCGTGCACTCGTCCCAAGTT
GGAGCAGTTGACGGTATGTATGAAAATACTCGAATACATGCTTTTGTGAT
AGATGGTTTGGCGAACAAGCCAGTCTTTTGAATAACTAATTACTCCACAT
ACATTACTTTCCCTCAGCCAATAAAACATGATAAATTATCTTGTCTCTAG
GTAACTGCCATGGAGTAATTAACCAAAACCAAACCAAAACCAATTAGCCA
AAACAAAAGCCTAATCCTCCAAAAAAAAGTCCAAAAAGACTTGTACCATA
GTTTTTGATGATAATCAGTCCCTGATAGATTTCATTTTTTCTTAGGGTCA
ATTGTTCCAATCTACAATGTGAATTGTCGCAGCTTTACAACAGAAGCTCA
GGTAAGTTACTTGTTGACCAACCTAAACTTATAAGAACACTAACCAAATA
CCAATACAGTAAGTCTAACCTCATATTATGTAATTTCCCGGGTCCTGAAA
TTATCTTTTCTTTGTTTAGGACCCGGGGGTCACTGAACGCTCCTACAAAC
GTATCAACATTTCACAATCTGACAATGATTTCATCAATTCATTTGGGCTT
GTAATGAATGAAAACGATGAAGCCATTTCGGTTGTATTAGGAAATCAGAT
GCGAAGACAGTTGTGGGAAGGCTGTCATACTGAAGAGGAGTCTCGCATGA
TTAAAATGGCAACCCAAAATATGAATCATCTCTTCTTCAACAAAAATTTG
TCTGAGGAAGAAGATTACTTGATAAAGTTATGTAGCTCTGCTCCTGATAG
CACCATTTTCCCCTATGTGTTCAAGTATGATGATACTGCATTCATGCCAT
ATGCCTTCCCTGTGGATTACATGACTGATAGAGATGAGGTTACTAAACCT
GAGGCTACACAGAATTTTGATATGACTGTCGATCCTAAATCCTTTCGTCA
TTCTGAAATCAGAAAGAAGGCTGGTATTTTCTATACCTCTGAATCAGACT
TCCCTGAAAATTATGACGACGAACCACCTTTTCCCAAATCTTCAAATTAT
GCTTGAGAAGCCAATTATTGCATCTCATGGTATATGTACATAGACAAGAC
TTATATGAGATAAATCTACAAAATGCGGATCTCAAAAATTATCTCGCTAA
TATATTTAAGTTTTTGTTATTTTTATCTTAAAATTTGTGTACATAGAGTT
TCGCCCTGTCCTGTCTAAATTTTGTAAAAAAAAAGTGAAAAAGAATTTCA
TTCAGCCATTGTCAAAGTCATGAAAAGGTTTCTTAGTATTTTTGTGAGGT
ATCTTCTTCAGGGATCTGGGTACATGGTGAAGGTGTATATAGATTATATT
TATTCTTACTCTCATTATTTTTTTGTACATAGATATTTTTGATCTGTATT
ATTTTGCATTTGGTAGTACAGAGTAATAAATTATTTTGGAAAG

Coding sequence (CDS) from alignment at sc0000039:400836..404178-

>TCONS_00004124 ID=TCONS_00004124|Name=TCONS_00004124|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000039:400836..404178- (Clytia hemisphaerica)
GACCCGGGGGTCACTGAACGCTCCTACAAACGTATCAACATTTCACAATC
TGACAATGATTTCATCAATTCATTTGGGCTTGTAATGAATGAAAACGATG
AAGCCATTTCGGTTGTATTAGGAAATCAGATGCGAAGACAGTTGTGGGAA
GGCTGTCATACTGAAGAGGAGTCTCGCATGATTAAAATGGCAACCCAAAA
TATGAATCATCTCTTCTTCAACAAAAATTTGTCTGAGGAAGAAGATTACT
TGATAAAGTTATGTAGCTCTGCTCCTGATAGCACCATTTTCCCCTATGTG
TTCAAGTATGATGATACTGCATTCATGCCATATGCCTTCCCTGTGGATTA
CATGACTGATAGAGATGAGGTTACTAAACCTGAGGCTACACAGAATTTTG
ATATGACTGTCGATCCTAAATCCTTTCGTCATTCTGAAATCAGAAAGAAG
GCTGGTATTTTCTATACCTCTGAATCAGACTTCCCTGAAAATTATGACGA
CGAACCACCTTTTCCCAAATCTTCAAATTATGCTTGAGGTCAATTGTTCC
AATCTACAATGTGAATTGTCGCAGCTTTACAACAGAAGCTCAGATGGCGT
CCAGGAGAATTTTGGTTCAACTTCAAAGAAATGGAGGAAAGTTGTTTAAA
ACTAATCTTTTAAACAATACATGCAATCAAGGCATAAGGAAGAATACCAT
CACCCAAAAGTTTGGACCCGGGGGTCACTGAACGCTCCTACAAACGTATC
AACATTTCACAATCTGACAATGATTTCATCAATTCATTTGGGCTTGTAAT
GAATGAAAACGATGAAGCCATTTCGGTTGTATTAGGAAATCAGATGCGAA
GACAGTTGTGGGAAGGCTGTCATACTGAAGAGGAGTCTCGCATGATTAAA
ATGGCAACCCAAAATATGAATCATCTCTTCTTCAACAAAAATTTGTCTGA
GGAAGAAGATTACTTGATAAAGTTATGTAGCTCTGCTCCTGATAGCACCA
TTTTCCCCTATGTGTTCAAGTATGATGATACTGCATTCATGCCATATGCC
TTCCCTGTGGATTACATGACTGATAGAGATGAGGTTACTAAACCTGAGGC
TACACAGAATTTTGATATGACTGTCGATCCTAAATCCTTTCGTCATTCTG
AAATCAGAAAGAAGGCTGGTATTTTCTATACCTCTGAATCAGACTTCCCT
GAAAATTATGACGACGAACCACCTTTTCCCAAATCTTCAAATTATGCTTG
AGGTCAATTGTTCCAATCTACAATGTGAATTGTCGCAGCTTTACAACAGA
AGCTCAGATGGCGTCCAGGAGAATTTTGGTTCAACTTCAAAGAAATGGAG
GAAAGTTGTTTAAAACTAATCTTTTAAACAATACATGCAATCAAGGCATA
AGGAAGAATACCATCACCCAAAAGTTTGGACCCGGGGGTCACTGAACGCT
CCTACAAACGTATCAACATTTCACAATCTGACAATGATTTCATCAATTCA
TTTGGGCTTGTAATGAATGAAAACGATGAAGCCATTTCGGTTGTATTAGG
AAATCAGATGCGAAGACAGTTGTGGGAAGGCTGTCATACTGAAGAGGAGT
CTCGCATGATTAAAATGGCAACCCAAAATATGAATCATCTCTTCTTCAAC
AAAAATTTGTCTGAGGAAGAAGATTACTTGATAAAGTTATGTAGCTCTGC
TCCTGATAGCACCATTTTCCCCTATGTGTTCAAGTATGATGATACTGCAT
TCATGCCATATGCCTTCCCTGTGGATTACATGACTGATAGAGATGAGGTT
ACTAAACCTGAGGCTACACAGAATTTTGATATGACTGTCGATCCTAAATC
CTTTCGTCATTCTGAAATCAGAAAGAAGGCTGGTATTTTCTATACCTCTG
AATCAGACTTCCCTGAAAATTATGACGACGAACCACCTTTTCCCAAATCT
TCAAATTATGCTTGAGGTCAATTGTTCCAATCTACAATGTGAATTGTCGC
AGCTTTACAACAGAAGCTCAGATGGCGTCCAGGAGAATTTTGGTTCAACT
TCAAAGAAATGGAGGAAAGTTGTTTAAAACTAATCTTTTAAACAATACAT
GCAATCAAGGCATAAGGAAGAATACCATCACCCAAAAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002295XLOC_002295Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004124-proteinTCONS_00004124-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004124-exon-sc0000039-1575043694:403938..404178TCONS_00004124-exon-sc0000039-1575043694:403938..404178Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1575043694:401878..401933TCONS_00004124-exon-sc0000039-1575043694:401878..401933Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1575043694:400836..401759TCONS_00004124-exon-sc0000039-1575043694:400836..401759Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1510915933:403938..404178TCONS_00004124-exon-sc0000039-1510915933:403938..404178Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1510915933:401878..401933TCONS_00004124-exon-sc0000039-1510915933:401878..401933Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1510915933:400836..401759TCONS_00004124-exon-sc0000039-1510915933:400836..401759Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1491911889:403938..404178TCONS_00004124-exon-sc0000039-1491911889:403938..404178Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1491911889:401878..401933TCONS_00004124-exon-sc0000039-1491911889:401878..401933Clytia hemisphaericaexon
TCONS_00004124-exon-sc0000039-1491911889:400836..401759TCONS_00004124-exon-sc0000039-1491911889:400836..401759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:400836..404178 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.023	130.855	175.004	181.658	28.1135	20.4643	42.4774	45.0696	107.201	91.3294	184.148	172.197	73.3388	73.8206	62.2252	70.473	41.5717	75.299	63.8646	57.7577	110.515	102.289	77.9589	93.8882	81.6409	81.5747	102.969	83.969	18.1455	18.5275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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