TCONS_00004123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004123
Unique NameTCONS_00004123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004123 ID=TCONS_00004123|Name=TCONS_00004123|organism=Clytia hemisphaerica|type=transcript|length=285bp
CAAACTTGTAAAGTTCAAAATAGAAAGCAGCAAAAACAAGAAGCAAGCAT
GGCGTCCAGGAGAATTTTGGTTCAACTTCAAAGAAATGGAGGAAAGTTGT
TTAAAACTAATCTTTTAAACAATACATGCAATCAAGGCATAAGGAAGAAT
ACCATCACCCAAAAGTTTGgGTCAATTGTTCCAATCTACAATGTGAATTG
TCGCAGCTTTACAACAGAAGCTCAGCAGACAGAAGAAGTTGAGAATGTTC
ATGTCATTTCAGACACTGAGAGTGTTACAGGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000039:399911..404106-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004123 ID=TCONS_00004123|Name=TCONS_00004123|organism=Clytia hemisphaerica|type=transcript|length=4196bp|location=Sequence derived from alignment at sc0000039:399911..404106- (Clytia hemisphaerica)
CAAACTTGTAAAGTTCAAAATAGAAAGCAGCAAAAACAAGAAGCAAGCAT
GGCGTCCAGGAGAATTTTGGTTCAACTTCAAAGAAATGGAGGAAAGTTGT
TTAAAACTAATCTTTTAAACAATACATGCAATCAAGGCATAAGGAAGAAT
ACCATCACCCAAAAGTTTGGTAAGACTCTTTCAAGGAGAGGAGTGACTTT
GCCTTTCAAATTAAAAATATATGTGGGTTTTATCTGAAGCACCTTCCGAA
TCTTCTTTGAATTTTGCCACTCTGTTTAAAAAAAGCCAATTTTGCTTCTC
TGTTAGTTAGGTTGCAACCCACTGTTGGCCTTCAACTTTCTTTATGAATG
CTACTAAAAATTATGAAATACAAATACTTCCCATTTAATCATCTTTCTCA
AACCTGAAATCTGTAACAATTTTGAGTGTCACCCTTAATCTACATTCCAT
CACCTTACATCTAAATTCCCAAAAATTTTAGATATTGACAAATTTTACCG
TCAACTGCTCCAACTTGGGACTTTCTTACGCAACATGGGACGGCCATTCC
ACCACGCCATTTCACCAAACCTCCAAAGTCATTTTATTTGAGTTCAATGA
ACCACGTATTAAAAAATACACGATTTCTCTTTCGCACTGAGTAGGTTTTT
AAATCAAAATATGAAAAAAATCCGTAGTGGAAAACACACGCAAATGTGAG
CGTTTGACGTCAATCGCACGGCAAGTTACACACTCGCTATTTGTTAATCT
CATTGGGCGGTAGGCGGTTAGCACAGATGTTTGTCGTAAGCAAAAGTTGG
TAATGCAAAGTCTTACAACATTGCAATTAGCAAACGCAAAAAAAAAACTC
CATAATGGCGGCATCATGCGAGAGCAATCAGAATACCAAAATAAACAAAT
GAAGTGAAGTTATCATCAAAAAATAAAAATAAAACAAACCTTTAACCTTT
CAATAATCCAATTAAACAAAATATTTCAAATGAATTGATGTTTAAGTTTG
AAAACAAGCACCATTTCCACCATATACTTTTAGAGCAAAAAGCAGAATTT
TGCTGAAATCTTCTGCTCTTCCCGGGCAAATAATTTCTCAGAATATCAGA
GAGTCTGGTGCTGAATATATAGTTTAGTGGGTCAAGCTTGTTTTAGTTCT
CTATTTATAGATAAAGCCTGAAAACCTCATCTGAGACGGGGGTCATAAAC
GATCTTTATCTATTTTGAAGTCGTACAATCTTTTACTTCTCAAAACCATT
TAGATTCAGGTTTTATATATAATAACAAAACAAAAATTTGTTTCATTAAA
GCTATTTTCTTTCAGCGAAATAAGCCTTTAGTAAATCTTTAAACCCCCAG
TTTTATTTCGTTATTTACAATGTGATTTTATAGCGGGAGTTGGGAACCGG
CTAGATTGTGTGATCTGATTGGCTGAATGAGCAAACGCGGGACTCGGCCC
AGGACTTTTTACCCGCGTTTACAGCAATATTTATTCTTTACGCTTTCGTT
TTCAAAATCTGTTGAACATGGATTTTGGCTTGTGACAATTACCTTGCCTA
ACATCTGTGTTAGGCGGCGGGCGTTCTCTAATTCTCCATTCGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCGCTATCAGTGAAAGTTATTGTGA
CATGTTATGACAGAAAGTATGATTGATAAACTTGGTGGAGTTATCAAAAC
AAATTTGTTGTCAAAGAAATTTAACAGTAAGTGAAAATACAGGCCAAAGT
CCCATGTTGCGTGCACTCGTCCCAAGTTGGAGCAGTTGACGGTATGTATG
AAAATACTCGAATACATGCTTTTGTGATAGATGGTTTGGCGAACAAGCCA
GTCTTTTGAATAACTAATTACTCCACATACATTACTTTCCCTCAGCCAAT
AAAACATGATAAATTATCTTGTCTCTAGGTAACTGCCATGGAGTAATTAA
CCAAAACCAAACCAAAACCAATTAGCCAAAACAAAAGCCTAATCCTCCAA
AAAAAAGTCCAAAAAGACTTGTACCATAGTTTTTGATGATAATCAGTCCC
TGATAGATTTCATTTTTTCTTAGGGTCAATTGTTCCAATCTACAATGTGA
ATTGTCGCAGCTTTACAACAGAAGCTCAGGTAAGTTACTTGTTGACCAAC
CTAAACTTATAAGAACACTAACCAAATACCAATACAGTAAGTCTAACCTC
ATATTATGTAATTTCCCGGGTCCTGAAATTATCTTTTCTTTGTTTAGGAC
CCGGGGGTCACTGAACGCTCCTACAAACGTATCAACATTTCACAATCTGA
CAATGATTTCATCAATTCATTTGGGCTTGTAATGAATGAAAACGATGAAG
CCATTTCGGTTGTATTAGGAAATCAGATGCGAAGACAGTTGTGGGAAGGC
TGTCATACTGAAGAGGAGTCTCGCATGATTAAAATGGCAACCCAAAATAT
GAATCATCTCTTCTTCAACAAAAATTTGTCTGAGGAAGAAGATTACTTGA
TAAAGTTATGTAGCTCTGCTCCTGATAGCACCATTTTCCCCTATGTGTTC
AAGTATGATGATACTGCATTCATGCCATATGCCTTCCCTGTGGATTACAT
GACTGATAGAGATGAGGTTACTAAACCTGAGGCTACACAGAATTTTGATA
TGACTGTCGATCCTAAATCCTTTCGTCATTCTGAAATCAGAAAGAAGGCT
GGTATTTTCTATACCTCTGAATCAGACTTCCCTGAAAATTATGACGACGA
ACCACCTTTTCCCAAATCTTCAAATTATGCTTGAGAAGCCAATTATTGCA
TCTCATGGTATATGTACATAGACAAGACTTATATGAGATAAATCTACAAA
ATGCGGATCTCAAAAATTATCTCGCTAATATATTTAAGTTTTTGTTATTT
TTATCTTAAAATTTGTGTACATAGAGTTTCGCCCTGTCCTGTCTAAATTT
TGTAAAAAAAAAGTGAAAAAGAATTTCATTCAGCCATTGTCAAAGTCATG
AAAAGGTTTCTTAGTATTTTTGTGAGGTATCTTCTTCAGGGATCTGGGTA
CATGGTGAAGGTGTATATAGATTATATTTATTCTTACTCTCATTATTTTT
TTGTACATAGATATTTTTGATCTGTATTATTTTGCATTTGGTAGTACAGA
GTAATAAATTATTTTGGAAAGATAACCCAATGTTCCCTTTCGATTTTGAA
GTGAATTAGAAAGTTGCTATTCTAAGTTTCTCACATTTTGAAATGAAAAG
CTTCGTCACAAACAAATTTTCAAAAAAATTCATGATAAAGCTTTTTAGAT
ATTCAAAATTTTAAAACACAAGCACTCTAAAAAAATTTGATGTGTCANCC
TGAAAATTATGACGACGAACCACCTTTTCCCAAATCTTCAAATTATGCTT
GAGAAGCCAATTATTGCATCTCATGGTATATGTACATAGATAAGACTTAT
ATGAGATAAATCTACAAAATGCGGATCTTAAAAATTATCTCGCTAATATA
TTTAAGTTTTTGTTATTTTTATCTTAAAATTTGTGTACATAGAGTTTCGC
CCTGTCCTGTCTAAATTTTGTAAAAAAAAAGTGAAAAAGAATTTCATTCA
GCCATTGTCAAAGTCATGAAAAGGTTTCTTAGTATTTTTGTGAGGTATCT
TCTTCAGGGATCTGGGTACATGGTGAAGGTGTATATAGATTATATTTATT
CTTACTCTCATTATTTTTTTGTACATAGATATTTTTGATCTGTATTATTT
TGCATTTGGTAGTACAGAGTAATAAATTATTTTGGAAAGATAACCCAATG
TTCCCTTTCGATTTTGAAGTGAATTAGAAAGTTGCTATTCTAAGTTTCTC
ACATTTTGAAATGAAAAGCTTCGTCACAAACAAATTTTCAAAAAAATTCA
CGATAAAGCTTTTTAGATATTTAAAATTTTAAAACACAAGCACTCCAAAA
AAATTTGATGTGTCAACTTAATCTACTTAATTCTATTATTCTTTCCTCAA
ACTATGCGAGTGTTGTTTTTTCGTTTTGTTTTTCAGCAGACAGAAGAAGT
TGAGAATGTTCATGTCATTTCAGACACTGAGAGTGTTACAGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002295XLOC_002295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004123-exon-sc0000039-1575043694:403938..404106TCONS_00004123-exon-sc0000039-1575043694:403938..404106Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1575043694:401878..401933TCONS_00004123-exon-sc0000039-1575043694:401878..401933Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1575043694:399911..399970TCONS_00004123-exon-sc0000039-1575043694:399911..399970Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1510915933:403938..404106TCONS_00004123-exon-sc0000039-1510915933:403938..404106Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1510915933:401878..401933TCONS_00004123-exon-sc0000039-1510915933:401878..401933Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1510915933:399911..399970TCONS_00004123-exon-sc0000039-1510915933:399911..399970Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1491911889:403938..404106TCONS_00004123-exon-sc0000039-1491911889:403938..404106Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1491911889:401878..401933TCONS_00004123-exon-sc0000039-1491911889:401878..401933Clytia hemisphaericaexon
TCONS_00004123-exon-sc0000039-1491911889:399911..399970TCONS_00004123-exon-sc0000039-1491911889:399911..399970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:399911..404106 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
218.787	219.017	158.661	127.059	86.5935	73.3944	84.3075	90.4765	151.661	114.716	261.498	208.813	217.344	200.342	220.035	225.917	137.469	187.611	134.692	160.661	260.925	241.056	180.634	250.183	195.862	237.818	193.591	228.258	138.441	136.34
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top