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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004122 ID=TCONS_00004122|Name=TCONS_00004122|organism=Clytia hemisphaerica|type=transcript|length=275bp
GTAAAGTTCAAAATAGAAAGCAGCAAAAACAAGAAGCAAGCATGGCGTCC
AGGAGAATTTTGGTTCAACTTCAAAGAAATGGAGGAAAGTTGTTTAAAAC
TAATCTTTTAAACAATACATGCAATCAAGGCATAAGGAAGAATACCATCA
CCCAAAAGTTTGgGTCAATTGTTCCAATCTACAATGTGAATTGTCGCAGC
TTTACAACAGAAGCTCAGACAGAAGAAGTTGAGAATGTTCATGTCATTTC
AGACACTGAGAGTGTTACAGGTAAG Run BLAST on NCBI transcript from alignment at sc0000039:399911..404099- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004122 ID=TCONS_00004122|Name=TCONS_00004122|organism=Clytia hemisphaerica|type=transcript|length=4189bp|location=Sequence derived from alignment at sc0000039:399911..404099- (Clytia hemisphaerica)
GTAAAGTTCAAAATAGAAAGCAGCAAAAACAAGAAGCAAGCATGGCGTCC
AGGAGAATTTTGGTTCAACTTCAAAGAAATGGAGGAAAGTTGTTTAAAAC
TAATCTTTTAAACAATACATGCAATCAAGGCATAAGGAAGAATACCATCA
CCCAAAAGTTTGGTAAGACTCTTTCAAGGAGAGGAGTGACTTTGCCTTTC
AAATTAAAAATATATGTGGGTTTTATCTGAAGCACCTTCCGAATCTTCTT
TGAATTTTGCCACTCTGTTTAAAAAAAGCCAATTTTGCTTCTCTGTTAGT
TAGGTTGCAACCCACTGTTGGCCTTCAACTTTCTTTATGAATGCTACTAA
AAATTATGAAATACAAATACTTCCCATTTAATCATCTTTCTCAAACCTGA
AATCTGTAACAATTTTGAGTGTCACCCTTAATCTACATTCCATCACCTTA
CATCTAAATTCCCAAAAATTTTAGATATTGACAAATTTTACCGTCAACTG
CTCCAACTTGGGACTTTCTTACGCAACATGGGACGGCCATTCCACCACGC
CATTTCACCAAACCTCCAAAGTCATTTTATTTGAGTTCAATGAACCACGT
ATTAAAAAATACACGATTTCTCTTTCGCACTGAGTAGGTTTTTAAATCAA
AATATGAAAAAAATCCGTAGTGGAAAACACACGCAAATGTGAGCGTTTGA
CGTCAATCGCACGGCAAGTTACACACTCGCTATTTGTTAATCTCATTGGG
CGGTAGGCGGTTAGCACAGATGTTTGTCGTAAGCAAAAGTTGGTAATGCA
AAGTCTTACAACATTGCAATTAGCAAACGCAAAAAAAAAACTCCATAATG
GCGGCATCATGCGAGAGCAATCAGAATACCAAAATAAACAAATGAAGTGA
AGTTATCATCAAAAAATAAAAATAAAACAAACCTTTAACCTTTCAATAAT
CCAATTAAACAAAATATTTCAAATGAATTGATGTTTAAGTTTGAAAACAA
GCACCATTTCCACCATATACTTTTAGAGCAAAAAGCAGAATTTTGCTGAA
ATCTTCTGCTCTTCCCGGGCAAATAATTTCTCAGAATATCAGAGAGTCTG
GTGCTGAATATATAGTTTAGTGGGTCAAGCTTGTTTTAGTTCTCTATTTA
TAGATAAAGCCTGAAAACCTCATCTGAGACGGGGGTCATAAACGATCTTT
ATCTATTTTGAAGTCGTACAATCTTTTACTTCTCAAAACCATTTAGATTC
AGGTTTTATATATAATAACAAAACAAAAATTTGTTTCATTAAAGCTATTT
TCTTTCAGCGAAATAAGCCTTTAGTAAATCTTTAAACCCCCAGTTTTATT
TCGTTATTTACAATGTGATTTTATAGCGGGAGTTGGGAACCGGCTAGATT
GTGTGATCTGATTGGCTGAATGAGCAAACGCGGGACTCGGCCCAGGACTT
TTTACCCGCGTTTACAGCAATATTTATTCTTTACGCTTTCGTTTTCAAAA
TCTGTTGAACATGGATTTTGGCTTGTGACAATTACCTTGCCTAACATCTG
TGTTAGGCGGCGGGCGTTCTCTAATTCTCCATTCGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGCTATCAGTGAAAGTTATTGTGACATGTTA
TGACAGAAAGTATGATTGATAAACTTGGTGGAGTTATCAAAACAAATTTG
TTGTCAAAGAAATTTAACAGTAAGTGAAAATACAGGCCAAAGTCCCATGT
TGCGTGCACTCGTCCCAAGTTGGAGCAGTTGACGGTATGTATGAAAATAC
TCGAATACATGCTTTTGTGATAGATGGTTTGGCGAACAAGCCAGTCTTTT
GAATAACTAATTACTCCACATACATTACTTTCCCTCAGCCAATAAAACAT
GATAAATTATCTTGTCTCTAGGTAACTGCCATGGAGTAATTAACCAAAAC
CAAACCAAAACCAATTAGCCAAAACAAAAGCCTAATCCTCCAAAAAAAAG
TCCAAAAAGACTTGTACCATAGTTTTTGATGATAATCAGTCCCTGATAGA
TTTCATTTTTTCTTAGGGTCAATTGTTCCAATCTACAATGTGAATTGTCG
CAGCTTTACAACAGAAGCTCAGGTAAGTTACTTGTTGACCAACCTAAACT
TATAAGAACACTAACCAAATACCAATACAGTAAGTCTAACCTCATATTAT
GTAATTTCCCGGGTCCTGAAATTATCTTTTCTTTGTTTAGGACCCGGGGG
TCACTGAACGCTCCTACAAACGTATCAACATTTCACAATCTGACAATGAT
TTCATCAATTCATTTGGGCTTGTAATGAATGAAAACGATGAAGCCATTTC
GGTTGTATTAGGAAATCAGATGCGAAGACAGTTGTGGGAAGGCTGTCATA
CTGAAGAGGAGTCTCGCATGATTAAAATGGCAACCCAAAATATGAATCAT
CTCTTCTTCAACAAAAATTTGTCTGAGGAAGAAGATTACTTGATAAAGTT
ATGTAGCTCTGCTCCTGATAGCACCATTTTCCCCTATGTGTTCAAGTATG
ATGATACTGCATTCATGCCATATGCCTTCCCTGTGGATTACATGACTGAT
AGAGATGAGGTTACTAAACCTGAGGCTACACAGAATTTTGATATGACTGT
CGATCCTAAATCCTTTCGTCATTCTGAAATCAGAAAGAAGGCTGGTATTT
TCTATACCTCTGAATCAGACTTCCCTGAAAATTATGACGACGAACCACCT
TTTCCCAAATCTTCAAATTATGCTTGAGAAGCCAATTATTGCATCTCATG
GTATATGTACATAGACAAGACTTATATGAGATAAATCTACAAAATGCGGA
TCTCAAAAATTATCTCGCTAATATATTTAAGTTTTTGTTATTTTTATCTT
AAAATTTGTGTACATAGAGTTTCGCCCTGTCCTGTCTAAATTTTGTAAAA
AAAAAGTGAAAAAGAATTTCATTCAGCCATTGTCAAAGTCATGAAAAGGT
TTCTTAGTATTTTTGTGAGGTATCTTCTTCAGGGATCTGGGTACATGGTG
AAGGTGTATATAGATTATATTTATTCTTACTCTCATTATTTTTTTGTACA
TAGATATTTTTGATCTGTATTATTTTGCATTTGGTAGTACAGAGTAATAA
ATTATTTTGGAAAGATAACCCAATGTTCCCTTTCGATTTTGAAGTGAATT
AGAAAGTTGCTATTCTAAGTTTCTCACATTTTGAAATGAAAAGCTTCGTC
ACAAACAAATTTTCAAAAAAATTCATGATAAAGCTTTTTAGATATTCAAA
ATTTTAAAACACAAGCACTCTAAAAAAATTTGATGTGTCANCCTGAAAAT
TATGACGACGAACCACCTTTTCCCAAATCTTCAAATTATGCTTGAGAAGC
CAATTATTGCATCTCATGGTATATGTACATAGATAAGACTTATATGAGAT
AAATCTACAAAATGCGGATCTTAAAAATTATCTCGCTAATATATTTAAGT
TTTTGTTATTTTTATCTTAAAATTTGTGTACATAGAGTTTCGCCCTGTCC
TGTCTAAATTTTGTAAAAAAAAAGTGAAAAAGAATTTCATTCAGCCATTG
TCAAAGTCATGAAAAGGTTTCTTAGTATTTTTGTGAGGTATCTTCTTCAG
GGATCTGGGTACATGGTGAAGGTGTATATAGATTATATTTATTCTTACTC
TCATTATTTTTTTGTACATAGATATTTTTGATCTGTATTATTTTGCATTT
GGTAGTACAGAGTAATAAATTATTTTGGAAAGATAACCCAATGTTCCCTT
TCGATTTTGAAGTGAATTAGAAAGTTGCTATTCTAAGTTTCTCACATTTT
GAAATGAAAAGCTTCGTCACAAACAAATTTTCAAAAAAATTCACGATAAA
GCTTTTTAGATATTTAAAATTTTAAAACACAAGCACTCCAAAAAAATTTG
ATGTGTCAACTTAATCTACTTAATTCTATTATTCTTTCCTCAAACTATGC
GAGTGTTGTTTTTTCGTTTTGTTTTTCAGCAGACAGAAGAAGTTGAGAAT
GTTCATGTCATTTCAGACACTGAGAGTGTTACAGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004122-exon-sc0000039-1575043694:403938..404099 | TCONS_00004122-exon-sc0000039-1575043694:403938..404099 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1575043694:401878..401933 | TCONS_00004122-exon-sc0000039-1575043694:401878..401933 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1575043694:399911..399967 | TCONS_00004122-exon-sc0000039-1575043694:399911..399967 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1510915933:403938..404099 | TCONS_00004122-exon-sc0000039-1510915933:403938..404099 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1510915933:401878..401933 | TCONS_00004122-exon-sc0000039-1510915933:401878..401933 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1510915933:399911..399967 | TCONS_00004122-exon-sc0000039-1510915933:399911..399967 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1491911889:403938..404099 | TCONS_00004122-exon-sc0000039-1491911889:403938..404099 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1491911889:401878..401933 | TCONS_00004122-exon-sc0000039-1491911889:401878..401933 | Clytia hemisphaerica | exon |
| TCONS_00004122-exon-sc0000039-1491911889:399911..399967 | TCONS_00004122-exon-sc0000039-1491911889:399911..399967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:399911..404099 - |
Blast
The following BLAST results are available for this feature:
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