TCONS_00004119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004119
Unique NameTCONS_00004119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004119 ID=TCONS_00004119|Name=TCONS_00004119|organism=Clytia hemisphaerica|type=transcript|length=1005bp
gaaaaataactcaaaGAAATGGAGATTTCAACCACATCAGTTTCTTCGCC
TGGTGAGTCTGAAAGAATCCCCTTGCTGATCAGTCAGCAACAACGCCAAC
AAACTGATGAACCAGATGCTCGTAGATGGCTAATGATGGTCATTTGTGCT
TTGAATGCTTCTGTTTCTGGATTGTTGCTTGGTGGTATGGTGTCAATAAA
ATTTCCATCGCACTTGGGACCTGTTTGGTTAAAGACTATCATGATGCTGA
AAATGAAATCAGAAACTTAGTTATTGGTCGTTTAGTGTTTGCAATAGTTG
CTATGGTTACAACACTTTTCGGTTACCGTGAACGTAATGTTTATTACAGC
AGAACAATGAATAATGATCCACTAGCATTATACACTTCGTTGAAAAAGCT
TGTTATGAACCGTGATTTTCTACTCATGAGTCAATCTTATGGCATATATT
TTGGACTTGCTATCACACTTTTGTTTCAAGTTAATCCACTGTTAATGGAG
AAATTTCCGAAAGAACATGGCACCTTAATCGGATGGGTTGGTTTCGCTCT
TATAATGATCTCATACCTATCAACTTTAATTTTTGGCGTATGGTTGGGAC
GATTTTCGTCTTACCGTAGTATGGCAATCATGCTGAATGTGTTATCTTTG
GCAGTTTGGTTATTATTCACATTACTTTTCATTGAAACTGCatctttttt
ccttttatttgttGTCTATCTTGGGATCGGTTTGGTGGCATTACCTTATA
TTTACCTTGGACCTGAACATGCAGCTGAACTAACATACCCTATTGATGAA
TCACTCTCCACCGGATTCATCGTGGCTTTCGGAAACTTGTATTCGTTCGT
TTTCTTGTTGTCCTTTGGTGCAATGACTAGTAAAGGATATTTTAAAAGTG
CTTGTCTAGGTATTTTTTCTgtttatattttatcaacagcTTTTGCTGTC
GCTTCTCGCTCATATTTGAGAAGAAGGAATGTTGTATCAGGACAAGTTAC
TGAAA
Run BLAST on NCBI

protein sequence of TCONS_00004119-protein

>TCONS_00004119-protein ID=TCONS_00004119-protein|Name=TCONS_00004119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MANDGHLCFECFCFWIVAWWYGVNKISIALGTCLVKDYHDAENEIRNLVI
GRLVFAIVAMVTTLFGYRERNVYYSRTMNNDPLALYTSLKKLVMNRDFLL
MSQSYGIYFGLAITLLFQVNPLLMEKFPKEHGTLIGWVGFALIMISYLST
LIFGVWLGRFSSYRSMAIMLNVLSLAVWLLFTLLFIETASFFLLFVVYLG
IGLVALPYIYLGPEHAAELTYPIDESLSTGFIVAFGNLYSFVFLLSFGAM
TSKGYFKSACLGIFSVYILSTAFAVASRSYLRRRNVVSGQVTE
Run BLAST on NCBI

transcript from alignment at sc0000039:376365..377724-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004119 ID=TCONS_00004119|Name=TCONS_00004119|organism=Clytia hemisphaerica|type=transcript|length=1360bp|location=Sequence derived from alignment at sc0000039:376365..377724- (Clytia hemisphaerica)
GAAAAATAACTCAAAGAAATGGAGATTTCAACCACATCAGTTTCTTCGCC
TGGTGAGTCTGAAAGAATCCCCTTGCTGATCAGTCAGCAACAACGCCAAC
AAACTGATGAACCAGATGCTCGTAGATGGCTAATGATGGTCATTTGTGCT
TTGAATGCTTCTGTTTCTGGATTGTTGCTTGGTGGTATGGTGTCAATAAA
AGTAATTGCTATTCATCATTATGGCATCACCTTAGAAGCAACTCACTGGA
CTGCCTACATTTTTCTGCTGACAAGTGCATGTTTCAGCATTCCCATCTCC
TGGCTCATTACAAAATATGGCATTCGAAAATTGTTGATAGTAATTTCTTT
ACTGCACACCATAACAACCATTTTTCATGTGTTCTCATACCAGAATGATC
GTTATTTGGTTTTCATGTTTGGGCAGATTCCTGCAGGTTTAGCTTATTCG
ATATTACTTCCACTGTTGACAAAGCTTTCACTAGACTGGTTTCCATTGCG
TGAACGAGCCTCCAGTACTTCTTTCTTTTTCTTTTCCTGTATCTTTGGAT
TTGCAGTTTCCATCGCACTTGGGACCTGTTTGGTTAAAGACTATCATGAT
GCTGAAAATGAAATCAGAAACTTAGTTATTGGTCGTTTAGTGTTTGCAAT
AGTTGCTATGGTTACAACACTTTTCGGTTACCGTGAACGTAATGTTTATT
ACAGCAGAACAATGAATAATGATCCACTAGCATTATACACTTCGTTGAAA
AAGCTTGTTATGAACCGTGATTTTCTACTCATGAGTCAATCTTATGGCAT
ATATTTTGGACTTGCTATCACACTTTTGTTTCAAGTTAATCCACTGTTAA
TGGAGAAATTTCCGAAAGAACATGGCACCTTAATCGGATGGGTTGGTTTC
GCTCTTATAATGATCTCATACCTATCAACTTTAATTTTTGGCGTATGGTT
GGGACGATTTTCGTCTTACCGTAGTATGGCAATCATGCTGAATGTGTTAT
CTTTGGCAGTTTGGTTATTATTCACATTACTTTTCATTGAAACTGCATCT
TTTTTCCTTTTATTTGTTGTCTATCTTGGGATCGGTTTGGTGGCATTACC
TTATATTTACCTTGGACCTGAACATGCAGCTGAACTAACATACCCTATTG
ATGAATCACTCTCCACCGGATTCATCGTGGCTTTCGGAAACTTGTATTCG
TTCGTTTTCTTGTTGTCCTTTGGTGCAATGACTAGTAAAGGATATTTTAA
AAGTGCTTGTCTAGGTATTTTTTCTGTTTATATTTTATCAACAGCTTTTG
CTGTCGCTTCTCGCTCATATTTGAGAAGAAGGAATGTTGTATCAGGACAA
GTTACTGAAA

Coding sequence (CDS) from alignment at sc0000039:376365..377724-

>TCONS_00004119 ID=TCONS_00004119|Name=TCONS_00004119|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at sc0000039:376365..377724- (Clytia hemisphaerica)
TTTCCATCGCACTTGGGACCTGTTTGGTTAAAGACTATCATGATGCTGAA
AATGAAATCAGAAACTTAGTTATTGGTCGTTTAGTGTTTGCAATAGTTGC
TATGGTTACAACACTTTTCGGTTACCGTGAACGTAATGTTTATTACAGCA
GAACAATGAATAATGATCCACTAGCATTATACACTTCGTTGAAAAAGCTT
GTTATGAACCGTGATTTTCTACTCATGAGTCAATCTTATGGCATATATTT
TGGACTTGCTATCACACTTTTGTTTCAAGTTAATCCACTGTTAATGGAGA
AATTTCCGAAAGAACATGGCACCTTAATCGGATGGGTTGGTTTCGCTCTT
ATAATGATCTCATACCTATCAACTTTAATTTTTGGCGTATGGTTGGGACG
ATTTTCGTCTTACCGTAGTATGGCAATCATGCTGAATGTGTTATCTTTGG
CAGTTTGGTTATTATTCACATTACTTTTCATTGAAACTGCATCTTTTTTC
CTTTTATTTGTTGTCTATCTTGGGATCGGTTTGGTGGCATTACCTTATAT
TTACCTTGGACCTGAACATGCAGCTGAACTAACATACCCTATTGATGAAT
CACTCTCCACCGGATTCATCGTGGCTTTCGGAAACTTGTATTCGTTCGTT
TTCTTGTTGTCCTTTGGTGCAATGACTAGTAAAGGATATTTTAAAAGTGC
TTGTCTAGGTATTTTTTCTGTTTATATTTTATCAACAGCTTTTGCTGTCG
CTTCTCGCTCATATTTGAGAAGAAGGAATGTTGTATCAGGACAAGTTACT
GAAATGGCTAATGATGGTCATTTGTGCTTTGAATGCTTCTGTTTCTGGAT
TGTTGCTTGGTGGTATGGTGTCAATAAAATTTCCATCGCACTTGGGACCT
GTTTGGTTAAAGACTATCATGATGCTGAAAATGAAATCAGAAACTTAGTT
ATTGGTCGTTTAGTGTTTGCAATAGTTGCTATGGTTACAACACTTTTCGG
TTACCGTGAACGTAATGTTTATTACAGCAGAACAATGAATAATGATCCAC
TAGCATTATACACTTCGTTGAAAAAGCTTGTTATGAACCGTGATTTTCTA
CTCATGAGTCAATCTTATGGCATATATTTTGGACTTGCTATCACACTTTT
GTTTCAAGTTAATCCACTGTTAATGGAGAAATTTCCGAAAGAACATGGCA
CCTTAATCGGATGGGTTGGTTTCGCTCTTATAATGATCTCATACCTATCA
ACTTTAATTTTTGGCGTATGGTTGGGACGATTTTCGTCTTACCGTAGTAT
GGCAATCATGCTGAATGTGTTATCTTTGGCAGTTTGGTTATTATTCACAT
TACTTTTCATTGAAACTGCATCTTTTTTCCTTTTATTTGTTGTCTATCTT
GGGATCGGTTTGGTGGCATTACCTTATATTTACCTTGGACCTGAACATGC
AGCTGAACTAACATACCCTATTGATGAATCACTCTCCACCGGATTCATCG
TGGCTTTCGGAAACTTGTATTCGTTCGTTTTCTTGTTGTCCTTTGGTGCA
ATGACTAGTAAAGGATATTTTAAAAGTGCTTGTCTAGGTATTTTTTCTGT
TTATATTTTATCAACAGCTTTTGCTGTCGCTTCTCGCTCATATTTGAGAA
GAAGGAATGTTGTATCAGGACAAGTTACTGAAATGGCTAATGATGGTCAT
TTGTGCTTTGAATGCTTCTGTTTCTGGATTGTTGCTTGGTGGTATGGTGT
CAATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002293XLOC_002293Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004119-proteinTCONS_00004119-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004119-exon-sc0000039-1575043694:377524..377724TCONS_00004119-exon-sc0000039-1575043694:377524..377724Clytia hemisphaericaexon
TCONS_00004119-exon-sc0000039-1575043694:376365..377168TCONS_00004119-exon-sc0000039-1575043694:376365..377168Clytia hemisphaericaexon
TCONS_00004119-exon-sc0000039-1510915933:377524..377724TCONS_00004119-exon-sc0000039-1510915933:377524..377724Clytia hemisphaericaexon
TCONS_00004119-exon-sc0000039-1510915933:376365..377168TCONS_00004119-exon-sc0000039-1510915933:376365..377168Clytia hemisphaericaexon
TCONS_00004119-exon-sc0000039-1491911889:377524..377724TCONS_00004119-exon-sc0000039-1491911889:377524..377724Clytia hemisphaericaexon
TCONS_00004119-exon-sc0000039-1491911889:376365..377168TCONS_00004119-exon-sc0000039-1491911889:376365..377168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:376365..377724 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.19076	2.94875	5.67829	11.3022	3.94035	2.52058	1.55456	3.01733	0.626643	1.81054	1.61989	1.41282	0.727588	0.792703	0.252844	1.72845	0.259541	1.16946	1.91758	1.0277	1.0886	1.83185	5.66713	5.04168	0.329687	1.33134	4.30692	2.68072	4.5106	3.55814
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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