TCONS_00004114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004114
Unique NameTCONS_00004114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004114 ID=TCONS_00004114|Name=TCONS_00004114|organism=Clytia hemisphaerica|type=transcript|length=211bp
acagtttagatgaaaaaataatgttatcCTAGCAAAACTTGCTTGATGGC
AATGGACAATGGATTTTAGATTTGGTTAGTTACCATCATACTGCCCACTA
ACCTAGATCCATGAATTATTTTGTATTTCTTCACGTGGTTGGTATACCAT
GagaattggcttaaaatttgtcTGAATTTGTCAAGTACAAGGTTCAATAT
CTTTGCTAACA
Run BLAST on NCBI

transcript from alignment at sc0000039:366459..366960-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004114 ID=TCONS_00004114|Name=TCONS_00004114|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at sc0000039:366459..366960- (Clytia hemisphaerica)
ACAGTTTAGATGAAAAAATAATGTTATCCTAGCAAAACTTGCTTGATGGC
AATGGACAATGGATTTTAGATTTGGTAAGTATGCTAAATGATCCTTGATG
CCTTTTTAGCTTCTACTAAGGAAAAACATTTTTTTGGGGTTGAAGTTTCA
AGTTTTTGTATGTACTACCTAACAGAAAATTGCAATCAAAGTTCTAATAT
TTTTACTTATGTAGGTAATTTATAAAACTATGACTCTGACCGGTTTGGCT
CTGACCGGTTTGGCTCTGACCGGTTAATAGATTGGCTCTGACCGANTTGT
TCATGATAGCTTGCTGCAAAAATCCTAATTCCCATTTTCATTATTATATA
CTTTCAGGTCAGCAGGTTAGTTACCATCATACTGCCCACTAACCTAGATC
CATGAATTATTTTGTATTTCTTCACGTGGTTGGTATACCATGAGAATTGG
CTTAAAATTTGTCTGAATTTGTCAAGTACAAGGTTCAATATCTTTGCTAA
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002291XLOC_002291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004114-exon-sc0000039-1575043694:366887..366960TCONS_00004114-exon-sc0000039-1575043694:366887..366960Clytia hemisphaericaexon
TCONS_00004114-exon-sc0000039-1575043694:366459..366595TCONS_00004114-exon-sc0000039-1575043694:366459..366595Clytia hemisphaericaexon
TCONS_00004114-exon-sc0000039-1510915933:366887..366960TCONS_00004114-exon-sc0000039-1510915933:366887..366960Clytia hemisphaericaexon
TCONS_00004114-exon-sc0000039-1510915933:366459..366595TCONS_00004114-exon-sc0000039-1510915933:366459..366595Clytia hemisphaericaexon
TCONS_00004114-exon-sc0000039-1491911889:366887..366960TCONS_00004114-exon-sc0000039-1491911889:366887..366960Clytia hemisphaericaexon
TCONS_00004114-exon-sc0000039-1491911889:366459..366595TCONS_00004114-exon-sc0000039-1491911889:366459..366595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:366459..366960 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.88901	1.03371	2.73669	1.2983	0	6.36912	0	2.64488	24.4999	50.2691	53.3993	23.7539	33.4502	17.2247	8.3898	22.3245	9.07236	13.9541	14.3405	23.6234	17.7215	13.5392	2.69385	31.1385	1.72962	0	109.57	74.636	129.532	95.5438
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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