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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004108 ID=TCONS_00004108|Name=TCONS_00004108|organism=Clytia hemisphaerica|type=transcript|length=4138bpRun BLAST on NCBI protein sequence of TCONS_00004108-protein >TCONS_00004108-protein ID=TCONS_00004108-protein|Name=TCONS_00004108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1262bp MFRVIQKILLIVTASLSLVEGRIVSPCTCPCPYGLTSGMKHCPNSYCKNIRun BLAST on NCBI transcript from alignment at sc0000039:248730..271196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004108 ID=TCONS_00004108|Name=TCONS_00004108|organism=Clytia hemisphaerica|type=transcript|length=22467bp|location=Sequence derived from alignment at sc0000039:248730..271196- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:248730..271196- >TCONS_00004108 ID=TCONS_00004108|Name=TCONS_00004108|organism=Clytia hemisphaerica|type=CDS|length=53046bp|location=Sequence derived from alignment at sc0000039:248730..271196- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004108 vs. Swiss-Prot (Human)
Match: AGRE3 (Adhesion G protein-coupled receptor E3 OS=Homo sapiens GN=ADGRE3 PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 4.807e-25 Identity = 106/377 (28.12%), Postives = 183/377 (48.54%), Query Frame = 1
Query: 2659 GVFFLNQHQLDNITSGGQVIEHAVGSNVLSVSVGXXXXXXXXXXPVTISFRNDSQSLGTGVI--MFWDF--EKGDWSGEGCWPINETKPDIISWNCSHLTNFALLINVNQDFNNPFALQLLTYXXXXXXXXXXXXXXFIYLSIXXXXXXXXXXXXXXXXXXXXXXXAAFIGLVDKTQWKLGCKIIAGAIQYLTLATFFWMFCEGINLY---RNFVILFKKSPHENIVFVKMSVFAWGTPAVFVFLTVFLRLEEVGSKEICLVH-GSAFYFGTLLPVGLILIFNWIVLVLAIRGMKTDKILHNNKRQT--PTWLEIWRAFICSIILGLAWTFGIFAIGDLRDIFQWLFCVFNAFQGLFIFLLFVVKNQEVQKYILKVF 3759
FF + D + QV+ A+G +VS+ + VT++F++ + T + ++W + WS +GC+ I+ K + NCSHL++FA+L+ + +P L ++TY+G +S+ LL+ +L + +R L L L +G +D+T+ K+ C IIAGA+ YL LA F WM EG++L+ RN ++ S + + ++ V +G PAV V ++ G+ + C +H F + L PV I N ++ +L +K N++ T T + ++A ILG W G+ +G + +LF + N+ QG FIFL++ + +Q+VQK K F
Sbjct: 251 ATFFEEMDKKDQVYLNSQVVSAAIGPK-RNVSLSKS---------VTLTFQHVKMTPSTKKVFCVYWKSTGQGSQWSRDGCFLIHVNKSHTMC-NCSHLSSFAVLMALTSQEEDP-VLTVITYVGLSVSLLCLLLAALTFLLCKAIRNTSTSLHLQLSLCLFLAHLLFLVG-IDRTEPKVLCSIIAGALHYLYLAAFTWMLLEGVHLFLTARNLTVVNYSSINRLMKWIMFPV-GYGVPAVTVAISAASWPHLYGTADRCWLHLDQGFMWSFLGPVCAIFSANLVLFILVFWILKRKLSSLNSEVSTIQNTRMLAFKATAQLFILGCTWCLGLLQVGPAAQVMAYLFTIINSLQGFFIFLVYCLLSQQVQKQYQKWF 613 The following BLAST results are available for this feature:
BLAST of TCONS_00004108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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