TCONS_00004104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004104
Unique NameTCONS_00004104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004104 ID=TCONS_00004104|Name=TCONS_00004104|organism=Clytia hemisphaerica|type=transcript|length=591bp
NNGACTTATACGCCCCGTATAAGACGGAGGCTAAAAAATAAACAGGGAGG
TTGCCCTGGCGAACCTTAACACCGTTGGGACTACAGTGTGCGAACCTAAT
CCAAATCTAACTGGATCCTTGACCTTAGGGGATGAATCTAAGTAACTGAC
TACTGACATGCAACGGATACGGAGTAACCCTACACCCCAACGTCACCCAA
ATCCAAAGAATAACATTAAAAGGAGGGTAAAGAAATTAATCTGAGGAAAT
TCTAGACACATAATGACATTAGGTAGGTTGCAAATAGTGATGTAAAAATT
TTACCTTGGCCAAGTTAGAATTAAACTTAGAAATATCTTGGTCAGAGATT
TGAGATACCTAAGAGAGCAATCCCTAGACCGTCTACCCATAATGTGTATC
ATTGAGTCAAACACACATGCGGAGAGGGCAGCGGAGGCTCCACCCATGCA
AAAACTTGAGCTCGAGCAGGGTATGGACTTTCCTTCAAGATATAAGTTTG
CCATCCATGAATTTCCATATATTATTGTGAAAAGAAATCTCTACGAAGAA
ATGTGTCTTAGAAATTGTAGtctgtaaattaaaaaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000039:209932..210625-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004104 ID=TCONS_00004104|Name=TCONS_00004104|organism=Clytia hemisphaerica|type=transcript|length=694bp|location=Sequence derived from alignment at sc0000039:209932..210625- (Clytia hemisphaerica)
NNGACTTATACGCCCCGTATAAGACGGAGGCTAAAAAATAAACAGGGAGG
TTGCCCTGGCGAACCTTAACACCGTTGGGACTACAGTGTGCGAACCTAAT
CCAAATCTAACTGGATCCTTGACCTTAGGGGATGAATCTAAGTAACTGAC
TACTGACATGCAACGGATACGGAGTAACCCTACACCCCAACGTCACCCAA
ATCCAAAGAATAACATTAAAAGGAGGGTAAAGAAATTAATCTGAGGAAAT
TCTAGACACATAATGACATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNACATAATGACATTAGGTAGGTTGCAAATAGTGATGTAAAA
ATTTTACCTTGGCCAAGTTAGAATTAAACTTAGAAATATCTTGGTCAGAG
ATTTGAGATACCTAAGAGAGCAATCCCTAGACCGTCTACCCATAATGTGT
ATCATTGAGTCAAACACACATGCGGAGAGGGCAGCGGAGGCTCCACCCAT
GCAAAAACTTGAGCTCGAGCAGGGTATGGACTTTCCTTCAAGATATAAGT
TTGCCATCCATGAATTTCCATATATTATTGTGAAAAGAAATCTCTACGAA
GAAATGTGTCTTAGAAATTGTAGTCTGTAAATTAAAAAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002286XLOC_002286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004104-exon-sc0000039-1575043694:210354..210625TCONS_00004104-exon-sc0000039-1575043694:210354..210625Clytia hemisphaericaexon
TCONS_00004104-exon-sc0000039-1575043694:209932..210250TCONS_00004104-exon-sc0000039-1575043694:209932..210250Clytia hemisphaericaexon
TCONS_00004104-exon-sc0000039-1510915933:210354..210625TCONS_00004104-exon-sc0000039-1510915933:210354..210625Clytia hemisphaericaexon
TCONS_00004104-exon-sc0000039-1510915933:209932..210250TCONS_00004104-exon-sc0000039-1510915933:209932..210250Clytia hemisphaericaexon
TCONS_00004104-exon-sc0000039-1491911889:210354..210625TCONS_00004104-exon-sc0000039-1491911889:210354..210625Clytia hemisphaericaexon
TCONS_00004104-exon-sc0000039-1491911889:209932..210250TCONS_00004104-exon-sc0000039-1491911889:209932..210250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:209932..210625 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43954	5.53524	1.47405	2.19271	5.17548	5.47614	5.98136	7.30581	4.6573	6.30246	5.93621	4.25622	3.20168	5.41395	0.434749	0.789924	1.26359	2.25104	0.136885	1.03375	0	0.983144	1.15679	1.38374	5.95151	8.73883	1.52922	1.30365	2.6241	3.0806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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