TCONS_00004103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004103
Unique NameTCONS_00004103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004103 ID=TCONS_00004103|Name=TCONS_00004103|organism=Clytia hemisphaerica|type=transcript|length=1307bp
CGAAAACAACGTTGTCGTCATCAAGAAATTTGgtaaaatatttcttgctt
TAACCCAATGAACGAGATAAGAAATCAAAGAGAGTAGGGGGTGAGACGAC
ATTTGAAACACGCGAGAAATATAGAGAAATACGTAAATGTTAGATGACGA
ATTTCGTTCGAATGAGGTTGAGaaatgcgttcttaatcttttgaaaTATC
AATTCATTTGGAATTTGTTTCTACCGCGAAAGTATATCAAAGAATGACAA
TCAAAGTGGACGCACAACAACAGACCAAAATGAGACTTTCTTCGTCACCG
CTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTGTTGGGTGAAAA
ATATTGCGGAAAGACAGCGTTGACAGTTCGATATTTAACGGGGAAGTTCA
TTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAAGCAAAC
TTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTTCACAAAATaC
AGTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATGCTA
TCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACATGTT
GTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATCGGA
CATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATCTAGCTA
AACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGATTATGAG
AAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGATCGACA
TACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATGACA
GTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGATCT
CTGCATTTacctaaagaaaataaagctgtTAAAGTTGGACAAAGTAAAAG
CCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTCTCA
GTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGGAAG
AGAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAGATTTTGGGCT
GATTGAATTATGTGATTGTCAACACGGcttgaaaattttcagagtttAGA
ATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAGTATTTGCTAA
TAAATTGACtctcaattttcatttttctgtgttttcaccagaaggttttt
ctttttttgcaaatggAAGCTGATGTTTTAAGAATCTATAATAACTCTGG
TAAACAT
Run BLAST on NCBI

transcript from alignment at sc0000039:110939..115083-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004103 ID=TCONS_00004103|Name=TCONS_00004103|organism=Clytia hemisphaerica|type=transcript|length=4145bp|location=Sequence derived from alignment at sc0000039:110939..115083- (Clytia hemisphaerica)
CGAAAACAACGTTGTCGTCATCAAGAAATTTGGTAAAATATTTCTTGCTT
TAACCCAATGAACGAGATAAGAAATCAAAGAGAGTAGGGGGTGAGACGAC
ATTTGAAACACGCGAGAAATATAGAGAAATACGTAAATGTTAGATGACGA
ATTTCGTTCGAATGAGGTTGAGGTATGATATCATAGTATCATGTCATTAA
ATTTCTCTTTTTCTTCTATTTCACAATAAGAAGAAACGAAAAGAAGATTT
ATTGTCCGGAATGGAAAACTTTTCAAGCTTTTGTTCGTAGGTTTATATTC
CGGATGGGATGGATGTAGGCATGCTTTAAAGAAGTCATTACTGACAAGTT
TACGATTTGTCAACGAGATTTGGATTTATGTTCAGCATGGTATGTGAAAA
GTATAACATTCAATGAAGATTTTTTAGAATGGAGGACGACAATGACAATT
TTTGCTTTAGATTCAAAGTCTGTAAAGTTTAGTTAACAAAGTATTCAATC
ATATGTTGAACTACTAGAGAATATTCGAGAAATATGGTCAATCTGACCCA
TAATAAGTTGCATTAACGTTTTTCGATAAATGTTGAATGAGTCTGTCAGA
CAAGCGGGAAATCTCTAAACAAGTTCTGTGACAAGTTATTTACTGATACT
TGAAGTTAACGATGTGTTGTGTTGTATGAATGGTCTCGTGACATAATGTT
TCCATTCCAAAAAGGCTGATGATTCATAGGGTCTTGTTACAAATGTGATG
TTTGGTATGAGGAGTATATAAATTGATTTGATACTGATGAGATGATGTTT
ACTTTAGTAGGTAGGGGAGTTTAGATCATATGAAGGGGCCCATTGAAGTT
GATGAAGATTCTGAATTTTAGAAAAACAATCAAATTTGTAGTATGTAATT
TTCAAAAGATTCTAAAACGGGGTTCCGAATTATGATTGGCTAAACAAGCT
TTTCGATTTGCTTGACGTACCCTAGAGTAGAGATTGGCGCTGGCACATCG
GGTGGTTAGTTATAAGATTAGTCCATAGATAACTTATTACTCAAAATAGT
TTAAGATTATGCACCNTAAGATTAGTCCATAGATAACCTATTAATCAAAA
GAGCTTGAGATTTTGCACTTCTGTCTCAATGACCAAGAGATTAAATGTGT
AATGGGAAATATCATTTTAACTGTATATTGAATAACTCTATTCATTTTGA
GAGAGAATTCCATAATGGTTGCTTTCAGCATGTGCTACATTGCGAAAGTA
AAACCCAAGAGTATTATAACAGACTAGTGGCGTAAATAAATCGGTACAGC
CGAATAAAGCGCCGAGTTTCAGCCTGACAATCTAGTAAAACACCATTTTT
AAGGCTGGTAGTAGTAGGTCCGACTACTGACAAGCTTTCTGACGAAAAAG
GGATTACGTTACAGAGAAAATGACAATGTCTCAGTTTGGAACAGTTCGAC
GGTTGTTTGTTTTTCAGTGAAAAGCAACTATCATTTTATCAAATATTTTG
TTTCCATCATTGGAAGACCCTAGTAAATATAGTTTTAATGTTGTAGGTAT
GCAATACAAATAGTGGGATTACTTTCTTATCATCACGTCTCGATTTTCAA
CAAATCTTTTTTTTTCTGCAGAAATGCGTTCTTAATCTTTTGAAATATCA
ATTCATTTGGAATTTGTTTCTACCGCGAAAGTATATCAAAGAATGACAAT
CAAAGTGGACGCACAACAACAGACCAAAATGAGACTTTCTTCGTCACCGC
TTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTGTTGGGTGAAAAA
TATTGCGGAAAGACAGGTAAGTTGGATCCAATCACATCTAGCTGACTTTT
TTAAATATTGATATGCCTCGTGATTATACTTCGCAGTAAAAGCCAAAAGC
TGATACAGGCTAGATCTTTATTGGTCAATTTAAGTCAATTTTGAACTTTT
ACAAAGGCTGCGATCACCACGTTGTAGAGAACTGCGACATTTGTTCCGGA
AAAATCTTGGAATCAGTATCAAAAAATTAGATGCACGTAGGTGTCTAAAA
TATGACCGGCAACCAGTATTGAATATCTTGAAACCAAAAAAATATGACCA
GCAAATACGAGCAAATATATCATTTTTTGATGATTCATGAAACATCAGGC
ATTGCATCCCTCTTTGATAAAACAACATTGTGGGTTGACCCAAAACATCA
TGACAAACCCATACAACATAAATCAGTTATGTCAGAAGGAGAAAGAAACC
CTGCTGATGGAAAAATACCTTCCTCCGCAGAAAATGTATGGACGGAGGTT
TGTGTACAAGATAAACAAGCACGGATTAGGATATATGATTATGCAATGTT
AGCTTTCTCAANTGCTGATGGAAAAATACCTTCCTCCGCAGAAAATGTAT
GGACGGAGGTTTGTGTACGAGATAAACAAGTACGGATTAGGATATATGAT
TATGCAATGTTTGCTTTCTCAAGTAATCAGTAAAACTAAATCTCGTGTTA
AACGTTATTATAAACAGCATTTTTTCAAGATTCTTGATTTTTTGTCTACT
ACTTGTCTGTAGATCAGGTCTGACTTTGTAAAACTAACTAGAACATCAAA
GTTATTATTGACTAAGAACCTAAATTTTGCTGATTGAATCAAGTGAGCAT
CTGTACCATACCTATGTTAGTGCTAACCGAAGCTAAGTTGAGTAAATGTC
TGCAAATGATTCAATTTAAGGGACTTTGTAGAAAGATTTTTAAATTACTT
CCACAACTATAAAACTGGGAAACACCAGAAAGTGGAGATACTAGATCCAA
AAAAGATAGAGACTACTCTAAAAAGTCTTCACAACATCCCTGTAAGTTTC
AAATGTAAATAACAAAAATACAACCATACAGTACCCACTTCAACTAAATT
TCAAAATTCGATATGGAAGCAAAGTGATATATTTTCACATTTTTGACTCG
TTTTAGCGTTGACAGTTCGATATTTAACGGGGAAGTTCATTTACGATTAT
GCGACCGGTGAAGATTTCATTTACCCTCATCAAGCAAACTTGAACAACGG
AGATGTCCAAATTAATATTGTCGATACTTCACAAAATGTAAGTAGAATAG
AAAACACCCCTGTCTCAAACAGTGTAACAGTACATAAAAGTTTCACCGAG
GCAAAAGGAGTCCTTGAGCGCTTGCCCCTTTCAGAAATGACTGGTAGCAG
TTGAAACTTTTAGCTTTAGTTTCCAGGGTGAGCTTATCTGTATTTCTTAC
ACATTTTCTCCTTTTCCATACAACCCTTACTATAAAAATGAACTACATAT
TTCAAAACTTAGGAACAGTATTTTTGATATTTTCAGACAGTGACCAGCGC
GATTGTGGATGCAGATGGAGTGATCATTGTGTATGCTATCAACAGTAAAT
CAAGTTTCCACAGAGCTGAAGAACTTTTAAAACATGTTGTTGCTGTCAGT
TGTAAACCTTCTATCGCGATCGCTGCTAATAAATCGGACATGTGGCATTA
TCGGACAGTTATGAGATCAGATGGTGAATATCTAGCTAAACAATACGGAT
GTAAATATTTCGAACTTTCCGCGTTGACGGATTATGAGAAGGTTCAGCGC
ATGTTTAATGTCATGTTAAAATTGATGAATGATCGACATACGGATAAAGA
ACTTATTGAGAGTAAATCTGCTATTGTGATTAATGACAGTTCACCGCCCC
CGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGATCTCTGCATTTACCT
AAAGAAAATAAAGCTGTTAAAGTTGGACAAAGTAAAAGCCCGATATTATT
CCGAAAATTGATTCGATCTTGGAATCAATCGAGTCTCAGTCGATCTAAAT
CAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGGAAGAGAATCTATTCA
AAGATGTTCAATGGTTAAAGATTGCCAGATTTTGGGCTGATTGAATTATG
TGATTGTCAACACGGCTTGAAAATTTTCAGAGTTTAGAATCCGAAGAAAG
TTGACCTTGTAAGCTATAGATTTTAGAGTATTTGCTAATAAATTGACTCT
CAATTTTCATTTTTCTGTGTTTTCACCAGAAGGTTTTTCTTTTTTTGCAA
ATGGAAGCTGATGTTTTAAGAATCTATAATAACTCTGGTAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002285XLOC_002285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004103-exon-sc0000039-1575043694:114912..115083TCONS_00004103-exon-sc0000039-1575043694:114912..115083Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1575043694:113268..113462TCONS_00004103-exon-sc0000039-1575043694:113268..113462Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1575043694:111997..112127TCONS_00004103-exon-sc0000039-1575043694:111997..112127Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1575043694:110939..111747TCONS_00004103-exon-sc0000039-1575043694:110939..111747Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1510915933:114912..115083TCONS_00004103-exon-sc0000039-1510915933:114912..115083Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1510915933:113268..113462TCONS_00004103-exon-sc0000039-1510915933:113268..113462Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1510915933:111997..112127TCONS_00004103-exon-sc0000039-1510915933:111997..112127Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1510915933:110939..111747TCONS_00004103-exon-sc0000039-1510915933:110939..111747Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1491911889:114912..115083TCONS_00004103-exon-sc0000039-1491911889:114912..115083Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1491911889:113268..113462TCONS_00004103-exon-sc0000039-1491911889:113268..113462Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1491911889:111997..112127TCONS_00004103-exon-sc0000039-1491911889:111997..112127Clytia hemisphaericaexon
TCONS_00004103-exon-sc0000039-1491911889:110939..111747TCONS_00004103-exon-sc0000039-1491911889:110939..111747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:110939..115083 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.566659	3.34109	0	0	10.3654	10.7235	1.44298	4.70684	0.810444	0	0	0	0	0
Blast
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BLAST of TCONS_00004103 vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.290e-20
Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 1 
Query:  313 NKKTFKIVVLGEKYCGKTALTVRYLTGKFIYDYATGEDFIYPHQANLNNGDVQINIVDTS-----QNTVTSA------IVDADGVIIVYAINSKSSFHRAEELLKHV--VAVSCKPSIAIAANKSDMWHYRTVMRSDGEYLAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVINDSSPPPIEDFEGR 885
             ++  KI V+G    GKTAL VR+LT +FI DY      +Y  Q  +    + + + DT      +N+++ +      I  AD V+IV++I    S+    +L +HV  + +  +  + + ANK+D+ H + V    G  LA   GC ++E+S   +Y  V   F+V+ K ++ +       E +   +I     P ++D + R
Sbjct:   30 GRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRR 233
The following BLAST results are available for this feature:
BLAST of TCONS_00004103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSLBB4.290e-2027.45Ras-like protein family member 11B OS=Homo sapiens... [more]
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