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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004100 ID=TCONS_00004100|Name=TCONS_00004100|organism=Clytia hemisphaerica|type=transcript|length=1482bp
TAGTGGCGTAAATAAATCGGTACAGCCGAATAAAGCGCCGAGTTTCAGCC
TGACAATCTAGTAAAACACCATTTTTAAGGCTGGTAGTAGTAGGTCCGAC
TACTGACAAGCTTTCTGACGAAAAAGGGATTACGTTACAGAGAAAATGAC
AATGTCTCAGTTTGGAACAGTTCGACGGTTGTTTGTTTTTCAGTGAAAAG
CAACTatcattttatcaaatattttgtttcCATCATTGGAAGACCCTAGT
AAATATAGTTTTAATGTTGTAGGTATGCAATACAAATAGTGGGATTACTT
TCTTATCATCACGTCTCGATTTtcaacaaatctttttttttctgcagaaa
tgcgttcttaatcttttgaaaTATCAATTCATTTGGAATTTGTTTCTACC
GCGAAAGTATATCAAAGAATGACAATCAAAGTGGACGCACAACAACAGAC
CAAAATGAGACTTTCTTCGTCACCGCTTCCAAGCATCAATAAAAAGACTT
TTAAAATCGTGGTGTTGGGTGAAAAATATTGCGGAAAGACAGCGTTGACA
GTTCGATATTTAACGGGGAAGTTCATTTACGATTATGCGACCGGTGAAGA
TTTCATTTACCCTCATCAAGCAAACTTGAACAACGGAGATGTCCAAATTA
ATATTGTCGATACTTCACAAAATaCAGTGACCAGCGCGATTGTGGATGCA
GATGGAGTGATCATTGTGTATGCTATCAACAGTAAATCAAGTTTCCACAG
AGCTGAAGAACTTTTAAAACATGTTGTTGCTGTCAGTTGTAAACCTTCTA
TCGCGATCGCTGCTAATAAATCGGACATGTGGCATTATCGGACAGTTATG
AGATCAGATGGTGAATATCTAGCTAAACAATACGGATGTAAATATTTCGA
ACTTTCCGCGTTGACGGATTATGAGAAGGTTCAGCGCATGTTTAATGTCA
TGTTAAAATTGATGAATGATCGACATACGGATAAAGAACTTATTGAGAGT
AAATCTGCTATTGTGATTAATGACAGTTCACCGCCCCCGATTGAAGACTT
TGAAGGGCGTCGAAGGGCGAGATCTCTGCATTTacctaaagaaaataaag
ctgtTAAAGTTGGACAAAGTAAAAGCCCGATATTATTCCGAAAATTGATT
CGATCTTGGAATCAATCGAGTCTCAGTCGATCTAAATCAACAGAAAAGCT
GTTTTAGATTTTGACTTGAGGGAAGAGAATCTATTCAAAGATGTTCAATG
GTTAAAGATTGCCAGATTTTGGGCTGATTGAATTATGTGATTGTCAACAC
GGcttgaaaattttcagagtttAGAATCCGAAGAAAGTTGACCTTGTAAG
CTATAGATTTTAGAGTATTTGCTAATAAATTGACtctcaattttcatttt
tctgtgttttcaccagaaggtttttctttttttgcaaatggAAGCTGATG
TTTTAAGAATCTATAATAACTCTGGTAAACAT Run BLAST on NCBI transcript from alignment at sc0000039:110939..113809- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004100 ID=TCONS_00004100|Name=TCONS_00004100|organism=Clytia hemisphaerica|type=transcript|length=2871bp|location=Sequence derived from alignment at sc0000039:110939..113809- (Clytia hemisphaerica)
TAGTGGCGTAAATAAATCGGTACAGCCGAATAAAGCGCCGAGTTTCAGCC
TGACAATCTAGTAAAACACCATTTTTAAGGCTGGTAGTAGTAGGTCCGAC
TACTGACAAGCTTTCTGACGAAAAAGGGATTACGTTACAGAGAAAATGAC
AATGTCTCAGTTTGGAACAGTTCGACGGTTGTTTGTTTTTCAGTGAAAAG
CAACTATCATTTTATCAAATATTTTGTTTCCATCATTGGAAGACCCTAGT
AAATATAGTTTTAATGTTGTAGGTATGCAATACAAATAGTGGGATTACTT
TCTTATCATCACGTCTCGATTTTCAACAAATCTTTTTTTTTCTGCAGAAA
TGCGTTCTTAATCTTTTGAAATATCAATTCATTTGGAATTTGTTTCTACC
GCGAAAGTATATCAAAGAATGACAATCAAAGTGGACGCACAACAACAGAC
CAAAATGAGACTTTCTTCGTCACCGCTTCCAAGCATCAATAAAAAGACTT
TTAAAATCGTGGTGTTGGGTGAAAAATATTGCGGAAAGACAGGTAAGTTG
GATCCAATCACATCTAGCTGACTTTTTTAAATATTGATATGCCTCGTGAT
TATACTTCGCAGTAAAAGCCAAAAGCTGATACAGGCTAGATCTTTATTGG
TCAATTTAAGTCAATTTTGAACTTTTACAAAGGCTGCGATCACCACGTTG
TAGAGAACTGCGACATTTGTTCCGGAAAAATCTTGGAATCAGTATCAAAA
AATTAGATGCACGTAGGTGTCTAAAATATGACCGGCAACCAGTATTGAAT
ATCTTGAAACCAAAAAAATATGACCAGCAAATACGAGCAAATATATCATT
TTTTGATGATTCATGAAACATCAGGCATTGCATCCCTCTTTGATAAAACA
ACATTGTGGGTTGACCCAAAACATCATGACAAACCCATACAACATAAATC
AGTTATGTCAGAAGGAGAAAGAAACCCTGCTGATGGAAAAATACCTTCCT
CCGCAGAAAATGTATGGACGGAGGTTTGTGTACAAGATAAACAAGCACGG
ATTAGGATATATGATTATGCAATGTTAGCTTTCTCAANTGCTGATGGAAA
AATACCTTCCTCCGCAGAAAATGTATGGACGGAGGTTTGTGTACGAGATA
AACAAGTACGGATTAGGATATATGATTATGCAATGTTTGCTTTCTCAAGT
AATCAGTAAAACTAAATCTCGTGTTAAACGTTATTATAAACAGCATTTTT
TCAAGATTCTTGATTTTTTGTCTACTACTTGTCTGTAGATCAGGTCTGAC
TTTGTAAAACTAACTAGAACATCAAAGTTATTATTGACTAAGAACCTAAA
TTTTGCTGATTGAATCAAGTGAGCATCTGTACCATACCTATGTTAGTGCT
AACCGAAGCTAAGTTGAGTAAATGTCTGCAAATGATTCAATTTAAGGGAC
TTTGTAGAAAGATTTTTAAATTACTTCCACAACTATAAAACTGGGAAACA
CCAGAAAGTGGAGATACTAGATCCAAAAAAGATAGAGACTACTCTAAAAA
GTCTTCACAACATCCCTGTAAGTTTCAAATGTAAATAACAAAAATACAAC
CATACAGTACCCACTTCAACTAAATTTCAAAATTCGATATGGAAGCAAAG
TGATATATTTTCACATTTTTGACTCGTTTTAGCGTTGACAGTTCGATATT
TAACGGGGAAGTTCATTTACGATTATGCGACCGGTGAAGATTTCATTTAC
CCTCATCAAGCAAACTTGAACAACGGAGATGTCCAAATTAATATTGTCGA
TACTTCACAAAATGTAAGTAGAATAGAAAACACCCCTGTCTCAAACAGTG
TAACAGTACATAAAAGTTTCACCGAGGCAAAAGGAGTCCTTGAGCGCTTG
CCCCTTTCAGAAATGACTGGTAGCAGTTGAAACTTTTAGCTTTAGTTTCC
AGGGTGAGCTTATCTGTATTTCTTACACATTTTCTCCTTTTCCATACAAC
CCTTACTATAAAAATGAACTACATATTTCAAAACTTAGGAACAGTATTTT
TGATATTTTCAGACAGTGACCAGCGCGATTGTGGATGCAGATGGAGTGAT
CATTGTGTATGCTATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAAC
TTTTAAAACATGTTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCT
GCTAATAAATCGGACATGTGGCATTATCGGACAGTTATGAGATCAGATGG
TGAATATCTAGCTAAACAATACGGATGTAAATATTTCGAACTTTCCGCGT
TGACGGATTATGAGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTG
ATGAATGATCGACATACGGATAAAGAACTTATTGAGAGTAAATCTGCTAT
TGTGATTAATGACAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTC
GAAGGGCGAGATCTCTGCATTTACCTAAAGAAAATAAAGCTGTTAAAGTT
GGACAAAGTAAAAGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAA
TCAATCGAGTCTCAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTT
TGACTTGAGGGAAGAGAATCTATTCAAAGATGTTCAATGGTTAAAGATTG
CCAGATTTTGGGCTGATTGAATTATGTGATTGTCAACACGGCTTGAAAAT
TTTCAGAGTTTAGAATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTT
AGAGTATTTGCTAATAAATTGACTCTCAATTTTCATTTTTCTGTGTTTTC
ACCAGAAGGTTTTTCTTTTTTTGCAAATGGAAGCTGATGTTTTAAGAATC
TATAATAACTCTGGTAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004100-exon-sc0000039-1575043694:113268..113809 | TCONS_00004100-exon-sc0000039-1575043694:113268..113809 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1575043694:111997..112127 | TCONS_00004100-exon-sc0000039-1575043694:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1575043694:110939..111747 | TCONS_00004100-exon-sc0000039-1575043694:110939..111747 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1510915933:113268..113809 | TCONS_00004100-exon-sc0000039-1510915933:113268..113809 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1510915933:111997..112127 | TCONS_00004100-exon-sc0000039-1510915933:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1510915933:110939..111747 | TCONS_00004100-exon-sc0000039-1510915933:110939..111747 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1491911889:113268..113809 | TCONS_00004100-exon-sc0000039-1491911889:113268..113809 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1491911889:111997..112127 | TCONS_00004100-exon-sc0000039-1491911889:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004100-exon-sc0000039-1491911889:110939..111747 | TCONS_00004100-exon-sc0000039-1491911889:110939..111747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:110939..113809 - |
Blast
BLAST of TCONS_00004100 vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 7.285e-20 Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 2
Query: 488 NKKTFKIVVLGEKYCGKTALTVRYLTGKFIYDYATGEDFIYPHQANLNNGDVQINIVDTS-----QNTVTSA------IVDADGVIIVYAINSKSSFHRAEELLKHV--VAVSCKPSIAIAANKSDMWHYRTVMRSDGEYLAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVINDSSPPPIEDFEGR 1060
++ KI V+G GKTAL VR+LT +FI DY +Y Q + + + + DT +N+++ + I AD V+IV++I S+ +L +HV + + + + + ANK+D+ H + V G LA GC ++E+S +Y V F+V+ K ++ + E + +I P ++D + R
Sbjct: 30 GRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRR 233
The following BLAST results are available for this feature:
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