TCONS_00004092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004092
Unique NameTCONS_00004092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004092 ID=TCONS_00004092|Name=TCONS_00004092|organism=Clytia hemisphaerica|type=transcript|length=1988bp
gaaaaaaaaaccacaaaaataaattattttgaaaatgaatctGTCGTTat
cataaatttttattttttgaattgaaatatGGATAGTGGAAAATCAAGTC
CATCCAATCTTGTTCGCTCACAATCACTCAGATTATCAAATTTTAACCGG
ACATCATTAGTACGTAGAAATCAAAGTGTAAGTGCAAAACAAGTGAAATT
CTTTCGTAATGGTGATCAATATTTCTCTGGTTTGAGACTTGCTGTTTCCA
TTGACCGTTACAAGGAATTTGAATCATTGTTAACAGAGTTgtcgtcaaaa
ttgaatttaCCTACTGGAGCAGTTAGATATCTTTTCAATGCAGATGATGG
ATCTTTAGTATCAGATGTATCtcaacttcaaaatggaatttCTTATGTTT
GTTCATCTTCTGCATCATTCCGTCAAATCGAAGGCGGTTACGGAAAGTTG
GTTCCAAATTGGTCCAATATCAAGAGATCAAGAAATATTTATCGACCACT
TAAAGTTTTaggaaatatagaaaattctTTTCGTCTGGATAGTAGTAAAG
ACTTTATTAAACCCAAATTGGTGACGGTAATAAGAAATGGGAAACCaccg
cagagaaaagtaactcTGTTATTGAATAATAAGACAGCAATATCATTGGA
TCAAGTACTTGACCAACTGTCAGCAAAGGGATCGTTAGGGAAGGTGGATA
AACTTCATACTACATCCGGAAAACCaATACGTGCGTTACGAGATTTATTC
GACGATACTACTGTTTTTATCGCGCTTTCCACAAACGAAAAGTTCCCTGA
TGATGGAATTGAACTCGACCCTAACAGTTATCGCATCACACCGTACCGTG
AAATGAAGAAATCGAACCAGATGGCTGTCAGAAGATCGAACTCCTTGAGA
CACAACATGAGATATAAAGATGAAAACGAAAATATGTCTCtatCAAATAT
TCGAAATTTAAAGAATGGTGCATTGCCTAAGCATGCACTGTCAGCACGAC
AAAGTGTGCAGCCAAGAATACGAACCACGTCACGTAAAGAAgaacagaaa
aataaagaagaattataTCCGACGTCCGTCTTCGCAAGCGACTCTGAATC
AGGAGTGCGAGGAAGAAAGTCGAAGAAAAAAGCCGCTAAAACTTTAAACA
ATACTGACAGTAATAATAGTAACAGTAAAACAATGGACATATACAGCACA
GTGTGGTTAAGCGATTATGAATCGATTAAATCTGTCGGTAGTAAATCGTT
AAACACGAGTGCTTCTTCATTCACTGAGAGCATTAACATGTCCCACTCCA
CCCCTCGTCGTCCCATTGCTAACCAAACAATTAATATCCCTGTTGCTGGG
CAATCAACTAAACaatcaaaatggcggacatTGAGTTTACCGGAGCTCGA
AATGTCGACGTTGACGGGTGATGATTTAACCGAACGTTTTGTACGTTTAC
AACTTGAGCAGGACAATCGCGAATTACGTTCCACCGTTGATACGTTACAA
CAGACATTGGAACAAGTCAAAACGTCCGTCTTCCCTTACGAAGCGGAATG
CTGTGACGAATGTGCGGATAGCAGAAACACACTGGATAGCATCTTTTACG
AACTTTCTCATAAAATGCATCGTAAAAAGCAATTAGAATATCGTGATTAC
ACTCCGTCTTTCGAGCGAACAGAGAGTGGTTACGACACATTACAACCACA
AGACTCCTCTCTTCATCGGCTTTCATCTACTTTTGACAAACAATCCAACC
ATTCTTTACTTTTATCCTCAACAGAGGAACACCAAAGTACCCCGGAAGAT
TATTTCCAATCTCGATTAGTCAAACGCCGAACTGCTCTTGCCAGTCATGA
CACTTCGTGCTGTATGGTCCAATGAAACACCTAAAATTTAAACCATAGgt
taaaatatatttataaatcttaatttattattttaaacatttaaattatt
ttcttataatgAATATAACTTGCTAAATGAAATTAACC
Run BLAST on NCBI

transcript from alignment at sc0000039:13602..22443-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004092 ID=TCONS_00004092|Name=TCONS_00004092|organism=Clytia hemisphaerica|type=transcript|length=8842bp|location=Sequence derived from alignment at sc0000039:13602..22443- (Clytia hemisphaerica)
GAAAAAAAAACCACAAAAATAAATTATTTTGAAAATGAATCTGTCGTTAT
CATAAATTTTTATTTTTTGAATTGAAATATGGATAGTGGAAAATCAAGTC
CATCCAATCTTGTTCGCTCACAATCACTCAGATTATCAAATTTTAACCGG
ACATCATTAGTACGTAGAAATCAAAGTGTAAGTGCAAAACAAGTGAAATT
CTTTCGTAATGGTGATCAATATTTCTCTGGTTTGAGACTTGCTGTTTCCA
TTGACCGTTACAAGGAATTTGAATCATTGTTAACAGAGTTGTCGTCAAAA
TTGAATTTACCTACTGGAGCAGTTAGATATCTTTTCAATGCAGATGATGG
ATCTTTAGTATCAGATGTATCTCAACTTCAAAATGGAATTTCTTATGTTT
GTTCATCTTCTGCATCATTCCGTCAAATCGAAGGCGGTTACGGAAAGTTG
GTTCCAAATTGGTCCAATATCAAGAGATCAAGAAATATTTATCGACCACT
TAAAGTTTTAGGAAATATAGAAAATTCTTTTCGTCTGGATAGTAGTAAAG
ACTTTATTAAACCCAAATTGGTGACGGTAATAAGAAATGGGAAACCACCG
CAGAGAAAAGTAACTCTGTTATTGAATAATAAGACAGCAATATCATTGGA
TCAAGTACTTGACCAACTGTCAGCAAAGGGATCGTTAGGGAAGGTGGATA
AACTTCATACTACATCCGGAAAACCAGTAAGTTTTTCATTTTTCCATTTT
TAGGGTTAGTTATAATTATTTTCTGGTAAATCTATATAGGGGAAAGTAGA
CCAGAGTAGACCTTCATTTTGATGAAAATGAAAGCTTTTATTTTATGTGA
AAAGAAATGTTCAGACCATTTTTCATGGGATTATATTAAAATTTTAAAAA
TTGATGAGCTAGAGACTAATATGAAAGGGGTTTTTTGCTATAGAATCTTT
TATAAATATTATCTCTACGAGCAAACAGTTTGGTTTTGAAATTATTTTTT
ATTTACAAGACAGTTGGAGTTCAAGGAGATTATTTTTTTGCCTCATCAGA
GAATAGTTTTTTAAAAACTTTTTCATATTCATTTGTCAATCAATGGTCCT
CTATTGCTTTCCAAACAGGAGAGTAGTAAAATTTTCAAAATATGTTGTTA
AACTCCCCCTATTCCTCTCTACTCACTATTTTTGTTTAATTAGTAAGTCC
ATATCTGTTTCCCTTCNATTCCTCTGTACTCAATATTTTTGTTTGATTAG
TAAGGTTCTATCTGTTTCCCTTCTTAAAGCCTATTAAAACATTGATGTCA
TCATTTGACCAAGCTCTAAACTATTTCAACGTTTCTCCTTTAAATTCCTA
AAATCATTATATGCGTCTGAAAAATGGAAGATCAGTGTTGCGTTTTCAAT
AAATTCACAAGGTTGAAAAGTTGAAAATAGCTGGAATTATAATCCTGTCC
TGAAAAAGTTTGTCTTTTTTTTTGAAAATCATTGAGACTATATTATGCAA
ATTTTGACGAATTCAATTATTTTGATTCTTATATAAAAACCCCAAAAGTC
AATAAAAAAGATTCATTTTTCGACACATCTGATTTTTATCATGATACCAT
ATTTTCAACGAGTCTTTATAACTCATGTATGTTAACCAATATTGTATAAA
CATGATTGGAAATACCACATAAAACGTTATTAATACATCATTTAAGCAAC
TCTATGTTATTGCAATGAAACTCGCACTTTCACTCGTCACAATAACAGTA
TTTTGGCATTCATTTCTCAAATATTTTAACGTCATTGTGTTCAGTTTCAC
CACCGATGGTTAGTTTTTGCTTTATAACATTGCCTTTAACAAACTCCCTC
ACCCTTCCTGACAGAAGAATATTTGATATTCACAAATGTTTTCTTTTATA
TAAGGATTTAACATCAGACTTTTACCACACATTTGTCAATGGGGTTTTAT
TTCGGAGTACAGACAGACCCTGCACAACTTGGAGAGTGTCGATAACTCAG
GGAAACCCAGGGCAATTTATTTTCCAGATTCCACGGAAAACATTTTCTTG
AATAGCATTCAAAAATTTGTTAATTTCGTCATCAGTTACAAAATAAACTA
AAGGTCAAATATGTATAATTTGTAAGTTTTTAATGAAAATGCATCTCGAT
TTGCTCAAAGCCCTCTATCTGAATCTTGCATTTGGAAGTTAAGAAAACAA
TCGAGGTTTTGCAAAGTATATTTTTTAAACACGCAGTAATATATAGCTTG
TTTGTTTTCATTCAAAACCCATTATCGAATGCAGTCAGCGTTACCATAAT
TTTTCCTCAATGAAATTTTCAGACAAATTAGTACGAGTAATTACTACTAG
CTTTAAACTGTCTAAACACTTAATGAAAGTTCCGGATCAAAGTCTTTCCT
GTTATGTAACGCAGAGAGAATCTGCACAAATGATTTAAATGCTCCCTGAT
CCTATGAAATGTCCAATGATTAACTATTTCATCATCTTATTCCCTGCTAA
TTTTACGCTCGCAAGTGTCCTATTCGTAATAATTATTTAGTAAGAATCAA
CACAGATTCATAACAGAAGAGAGTGTCTCGAACTCCCGTTCCTGCCATTC
CATCTTCTATTGAATGTAGATAAAACTGTCCTAAGTAAATTAATGACCTA
TCAATATCAATTATGAACGCCACATTATATCTCTCAACCCTACAGAAAAG
GACCTTCTTTCCGGTTTTAATAAATACTTGATCTTCATGACGTAATCTTT
CATACGGAAACACCCGAAAGCACCGGGCGTTTGCCACCAGTTTTGAATTT
AAACAATGAAGCTGGTGGCAAACACCCGGTATTTTTTGTGTGTATATCAA
GAATTGGATTATTACATGTGATGAAATCAAAATATTCTCAACTTCAGTTG
AGCTAGAATCTGACAATTTGTGTCTGCGTATGTCTGTGTGTCACAAAAAC
AATAGGGCTGTCTGGAGACTTCAAAAATGGTCGGATTCGGCTCATTTCGC
AAATTTGTTCCTTGGGTGAATATCTGAGTGTTTTTTCAATTTATCAAAAA
ATTTGATTTTCAAGGCCTGGGCACTTATCTTTTTGTGTTTTTTGCTACAA
TCNTGTTTTTTTTTTATTTATCAAAAATTTTGACTTTCAAGGCCTGGGCA
CTTATCTTTTTGTGTTTTTTTGCTACAATCGGGCCTATGAATAATTTTAC
CCATTTGAAATCCAAATTTTACAAAGACTTAAAATCATAATGATCTCAAG
CAAGATTGTAGATGCTTCCTGCTGTAAATTTGTGGTCCTCTAGTAGATAT
CCTCACTGTCAAAACTGGCAATGTTTGCTTTTAGGGAATTGTTTAAAATT
TAAGGCCCATCTGTCCGGGATTGAATCCAACCATTAAAGCAAATATCCCC
CCTCTAATCCCATCCTATATCACATTTCAGTTTATCATACTGGAATGAAA
AAGTATACTGGAATGCTTATTAGCAGTCCTTATTATTGATATGGACACTG
ATGTTTTATGAAAATATGAATGAAATGAAAATTGATGTTTTATCTCTCGT
TTAGATACGTGCGTTACGAGATTTATTCGACGATACTACTGTTTTTATCG
CGCTTTCCACAAACGAAAAGTTCCCTGATGATGGAATTGAACTCGACCCT
AACAGTAAGTCCTCTAATTGCTTTGATATTAATCCCCAAGTCCAAAAGTT
GCAGCTTTTCTATTTCGACTCTCTAGTCTACCGGATGTACCAGGGGGGGG
TCAGGGTCCATGATACCAACCCAGGGCCCAAAAACCTGACTTTTTGAAAG
TAGTAGACACCACCACCCCCTAAATTGGTATCAATACCAACTTGAAAACT
CCAATTTTTCTGAAAAAGGGGGGACCCACCCCCCTAAATTGGTATCAATA
CCAACTTGAAAACTCCAATTTTCTGAAAAAGGGTCCCCCTAAATTGGTAT
CGATACGAACTTGAAAATCCCGATTTTTCTGAAAAAGGGGGACCCCCCCC
CCCTTAAACTGGCTATCAGTAAAAATGCAAGAAGTTATATGCATAGGATA
CTACATACAAGGGACGCTAAACTAAATCTGTGGATGTTTTTATTCAAAGA
ACATTCCTCTTATTAATCACTTATATTATTGTACCACACTTTAGACTCCT
GAACATGAAAACAAGTTTTTCTCATTCTAACACAACGTAAATTAAGTTTC
TTGAACTAAATTGGCAAAATGTATCAAATTCATAAAACTAGTCCACCCGG
GGTGGAAGGGCAGTCAGGCAAATTGACCGACGGGTATGTGCGGCGGTTAA
GGGTATGTTTTTCAAAATATGTAAAGGTGGACTTTTAATAAATGCACTGG
ATGGGTGGAAATTTCAGCAAATCTAGGAAAAATTGCAAATTTTGGCTCGA
AAATCTTGATTTTTTTGCTCTAAGAGTTTAAAATTTGAAAAAATGCACTA
AGGGTTTGTAAGGGTATGAATTTCACCGATTCTTTTCTGCACTGTAAGAG
TGCGATTCTAAAAGCCATTTTTTTCGTCGCACATAATGTCAGTTGGTAAA
CCCACTGCCCCCGGGCTAGTTGATAAACTACACTAGATAAAAAACTCATT
GTATTAGGCAAGCCTTGAGTCTTTGTAACAGCCTGTATGATGAACGTTAT
GTACAGAAAATTTTATCACGACTAAAAAAGATCTAAGATCTGCTAAGACT
TGATTCAACTTGTTCAACTCTAGTTTTGAATGAATTTTGGTTGATTGAAA
GGATTGAGAGCAGCCAAAGTTAAATAAGAATTTAACTTCAATTATAGAAT
GAAGAATGCTTTTATATGGAATCAGGGTATAGTGTAAACGATTCAAATAA
GTTTTTATCCTTACATTATACAATATTTTAAGTCAGATACCAATTTCAAA
TTCAGAAATTAAAAAAAGGGGGAACCACCCCCTCATTTTGGTATCGATAC
CAACTTAAAGATTCCCTAATTTTCAAAAAAAGGGGACCCCGCCCCCTCCT
TTTGGTATCAATACCAACTTGACTTTTTGAAATTTGAAAAAAAAAATTCA
CACCAACCCCCGGCCCTGGGTTTGGTATCTGGATCCTGACCCCCCCCCCC
CGGACCAGTTGTTTGAAAATTTTGAAAAAAAATTTGAAAAAAAAAATTCA
CACCAACCCCCGGCCCTGGGTTTGGTATCTGGATCCTGACCCCCCCCCCC
TGGATGTACTGTATGAAAATTTGTATAAAGAAGTTGACAAATAATTGTGT
CCAGTTGTGTCCTAGTAATGGTTTCTTCGCATGGTCTTTTTACTTTTTTG
GTTAGATTAACTCATACTGTCATAAACCAAACACCGAAGGTTACTCGTTT
TTTAAATATAATCTCTGTTTTTAAACCAAGAAAATACTGTTTGAATTTTT
TGGCGGTTAAGTTTTGTTGTAATAACAACGGTTGTTTCAAATTTACGAGA
AAGAAAAGGGTTTATCTGCCTTATTCATCGCGTTTGGAATTTTAAGACGT
AGAGATTTTCTATTATGAACGACTCGTCATCAATGATATAAGATGTACAA
TCTCTCCTAATGTGCTTTCATAAAATCCCCTTTGGTTAAATTTCTCGTGA
TGTACGTGTGCCCTACAAGTAATAATACTAGATCCGTAGTTATTAAGAGT
GAAAATATCATCGGGGTACTGTATCACAATTTCAAGGTAGAAAATCCGTC
ATGGAAATTGAACAAATTCAAAGTAGTGTTTTGAACTAATGTTTCACTGG
TCATAATTGTGTTTCCTCTTTCTTACTTTTAAAAAAGGCACGAGGAAAGA
GTTTCTGTTCTCAAAAATGAATTATATGACCAGATCACGAGGAAGTGGTA
CAACTCTGCCAAACGCAATATCAATCAAAACTAGTTATTAAAGCACCACG
CGTTTAATTATAAGTACAGAAATTATATGCCCTTGTTGTTGTTTTTTATC
AACGTATAGATAGTCCCTTGATTTGCTTACCGAGAGATTTGTGTATTTCA
TTGGCAGGTTATCGCATCACACCGTACCGTGAAATGAAGAAATCGAACCA
GATGGCTGTCAGAAGATCGAACTCCTTGAGACACAACATGAGATATAAAG
ATGAAAACGAAAATATGTCTCGTAAGTCTCATTATTTCACTTACTCGTAT
TTAGGTATATTTCTATTAAAAGTCTGCCTCCTCTGTTTAAACCAGTATTT
TAACTAGAGTAAAGATCGTTTAGCCATCTATTTCCACGCAAATTGCAAGG
TCGTTGTTGGCTAGAGTCTCGCTGGGTCTGTTGGTTTTCGAAGCAAGGGA
TTGGAGGTTGTTCAGCACTCATGACTTTTTAGTTCAAAATTTTACTCTTG
TGAAAGTGTACAGTGTCTGCTGTAACTAGATTGCTATAGACACTCAGGGT
CGGCTTCATTCTACGCTGCATGCAATCAACGAGTTGTTGAATTGTGCATG
CAGGTATTCATCAGGCAATATGTAAATGATTGTTCTAAAGTTTATATTGA
TTCCGGATATTTTTTTTCAGTATCAAATATTCGAAATTTAAAGAATGGTG
CATTGCCTAAGGTATGTTTTTACTAAAGTTCTCTTTATTTTGTATCACTT
CACCTCTGCTAAATGTATCTTTTCAAAAGTGTGCAAAAACATGCCATGAG
ACATAAAAGGGATGGGGGTACATTTTGACGAAGTTAATAAGGTTAACGAT
TTTTTAGCAATCTGTTTTTTTTACCTTCATGTCTATAACTCTCTTGTGTC
GATGAAAATTCATGGTTTTCATCATATTTGTATTTTAACAATGTCAAGTT
TACGGTCAATTTGTTTACAGCATGCACTGTCAGCACGACAAAGTGTGCAG
CCAAGAATACGAACCACGTCACGTAAAGAAGAACAGAAAAATAAAGAAGA
ATTGTAAGTGACCTTCAGTTGTTTTTCACCATTTTCTATAAGAATTAATA
ACTATTGTTTATGTTCAAGCGTTCTTTTCTTTGAGGTACTTTGAGCCTCA
AGGTATTATAAATTTGAGCTATTTATGATCATACCCTATGATTTTAAAAT
CTTGAGCGTTCTCAAGAGTGAGACACTGCAGGTTCTGGGTTTGTTTTTTT
GGTTTCGTTTCTAAGCCCCATTGTTCTTACAAAGATTTTCTAATAAAAAA
GTGTGCCAGATCCACTCACTCTTTGTTTGGCAACACTTTTGTCATTGCTA
AACCTTGACAGTCTTGACAACCTTTGAAAATGCATTTGTTTTTAAGTATC
TATTCCGTAACGCTAACGGTATTTCTTGTCTTTTTTTATTAGATATCCGA
CGTCCGTCTTCGCAAGCGACTCTGAATCAGGTACATACTATTTTCTTCTA
AATTCTTTCTCACACTGGACGTGTTCAAGTCGAAGTAAACAGTTTCGAAA
GTTTTTTAGTTTTGAAGATAATTATAACCGCAATTAACTTTCTTAACCTT
TTTAAAAGTAATAATCAGCTTTAACTTTAACATGTAACAGATAGCCTTCT
ATAAAAAAGTTGTTTGCACGATTTCTGTGCTACATATTATGACTAACTAA
CTTGTTAAAAAGATATTTTTTACTGGCTAATCTTAACCTTCTGTATCTGT
TGTTTAAAAGTATACCTCGTACTGATTCCAACTTTGTTCGTGTCTCTTGC
AGATGACGAGAAGATGGAAATGTTTTCAAACGAAGTCTAAATTAAAAACA
AATTTAATCAGTTAAATTGTAATTAAACTTAAAGTGATCATATTATCCGC
TTCTAAATATTTTCAAAATAATGTACAGAAATAAGAGATAAACTTTGTAA
ATTTTAGTAAAAATGATATTATACTTTCGTTTTCTTCCTTCGCCACTCAC
TGTAAAGCATTCAGCAATCGTGCAAACACTTTTTTGGGGGAAATTATCAT
AGAAATACTTATTACGTACTTTGGAAATTATAATGTGCACGTTGCATTCT
TCACAGGAGTGCGAGGAAGAAAGTCGAAGAAAAAAGCCGCTAAAACTTTA
AACAATACTGACAGTAATAATAGTAACAGTAAAACAATGGACATATACAG
CACAGTGTGGTTAAGCGATTATGAATCGATTAAATCTGTCGGTAGTAAAT
CGTTAAACACGAGTGCTTCTTCATTCACTGAGAGCATTAACATGTCCCAC
TCCACCCCTCGTCGTCCCATTGCTAACCAAACAATTAATATCCCTGTTGC
TGGGCAATCAACTAAACAATCAAAATGGCGGACATTGAGTTTACCGGAGC
TCGAAATGTCGACGTTGACGGGTGATGATTTAACCGAACGTTTTGTACGT
TTACAACTTGAGCAGGACAATCGCGAATTACGTTCCACCGTTGATACGTT
ACAACAGACATTGGAACAAGTCAAAACGTCCGTCTTCCCTTACGAAGCGG
AATGCTGTGACGAATGTGCGGATAGCAGAAACACACTGGATAGCATCTTT
TACGAACTTTCTCATAAAATGCATCGTAAAAAGCAATTAGAATATCGTGA
TTACACTCCGTCTTTCGAGCGAACAGAGAGTGGTTACGACACATTACAAC
CACAAGACTCCTCTCTTCATCGGCTTTCATCTACTTTTGACAAACAATCC
AACCATTCTTTACTTTTATCCTCAACAGAGGAACACCAAAGTACCCCGGA
AGATTATTTCCAATCTCGATTAGTCAAACGCCGAACTGCTCTTGCCAGTC
ATGACACTTCGTGCTGTATGGTCCAATGAAACACCTAAAATTTAAACCAT
AGGTTAAAATATATTTATAAATCTTAATTTATTATTTTAAACATTTAAAT
TATTTTCTTATAATGAATATAACTTGCTAAATGAAATTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002281XLOC_002281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004092-exon-sc0000039-1575043694:21718..22443TCONS_00004092-exon-sc0000039-1575043694:21718..22443Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1575043694:18790..18889TCONS_00004092-exon-sc0000039-1575043694:18790..18889Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1575043694:16323..16436TCONS_00004092-exon-sc0000039-1575043694:16323..16436Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1575043694:15883..15923TCONS_00004092-exon-sc0000039-1575043694:15883..15923Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1575043694:15541..15623TCONS_00004092-exon-sc0000039-1575043694:15541..15623Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1575043694:15114..15151TCONS_00004092-exon-sc0000039-1575043694:15114..15151Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1575043694:13602..14487TCONS_00004092-exon-sc0000039-1575043694:13602..14487Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1510915933:21718..22443TCONS_00004092-exon-sc0000039-1510915933:21718..22443Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1510915933:18790..18889TCONS_00004092-exon-sc0000039-1510915933:18790..18889Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1510915933:16323..16436TCONS_00004092-exon-sc0000039-1510915933:16323..16436Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1510915933:15883..15923TCONS_00004092-exon-sc0000039-1510915933:15883..15923Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1510915933:15541..15623TCONS_00004092-exon-sc0000039-1510915933:15541..15623Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1510915933:15114..15151TCONS_00004092-exon-sc0000039-1510915933:15114..15151Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1510915933:13602..14487TCONS_00004092-exon-sc0000039-1510915933:13602..14487Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1491911889:21718..22443TCONS_00004092-exon-sc0000039-1491911889:21718..22443Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1491911889:18790..18889TCONS_00004092-exon-sc0000039-1491911889:18790..18889Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1491911889:16323..16436TCONS_00004092-exon-sc0000039-1491911889:16323..16436Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1491911889:15883..15923TCONS_00004092-exon-sc0000039-1491911889:15883..15923Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1491911889:15541..15623TCONS_00004092-exon-sc0000039-1491911889:15541..15623Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1491911889:15114..15151TCONS_00004092-exon-sc0000039-1491911889:15114..15151Clytia hemisphaericaexon
TCONS_00004092-exon-sc0000039-1491911889:13602..14487TCONS_00004092-exon-sc0000039-1491911889:13602..14487Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:13602..22443 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4702e-06	0.596747	0.408654	1.10501	2.06304	3.15197	18.2283	19.0798	3.48423	2.36989	14.6597	14.1233	12.8406	10.4268	8.4969	23.7264	20.9363	13.2007	1.06123	0.764168	10.4885	7.92627	6.09395	5.5041	10.2855	8.28739	2.96394	1.11926	0	0.542471
Blast
[Close]
BLAST of TCONS_00004092 vs. Swiss-Prot (Human)
Match: DCX (Neuronal migration protein doublecortin OS=Homo sapiens GN=DCX PE=1 SV=4)

HSP 1 Score: 164.851 bits (416), Expect = 9.192e-45
Identity = 97/227 (42.73%), Postives = 139/227 (61.23%), Query Frame = 1 
Query:  184 AKQVKFFRNGDQYFSGLRLAVSIDRYKEFESLLTEL----SSKLNLPTGAVRYLFNADDGSLVSDVSQLQNGISYVCSSSASFRQIEGGYGKLV-PNWS-NIKRSRNIYRPLKVLGNIENSFRLDSSKDFIKPKLVTVIRNGKPPQRKVTLLLNNKTAISLDQVLDQLSAKGSL--GKVDKLHTTSGKPIRALRDLFDDTTVFIALSTNE-KFPDDGIELDPNSYRI 837
            AK+V+F+RNGD+YF G+  AVS DR++ F++LL +L    S  +NLP G VRY++  D    +  + +L+ G SYVCSS   F+++E  Y K V PNWS N+K S N+  P  +  +  NS +   +KDF++PKLVT+IR+G  P++ V +LLN KTA S +QVL  ++    L  G V KL+T  GK +  L D F D  VFIA    + ++  D   LD N  R+
Sbjct:   52 AKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQG-VRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVE--YTKNVNPNWSVNVKTSANMKAPQSLASS--NSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRV 273
The following BLAST results are available for this feature:
BLAST of TCONS_00004092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCX9.192e-4542.73Neuronal migration protein doublecortin OS=Homo sa... [more]
back to top