TCONS_00004090 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004090
Unique Name	TCONS_00004090
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3104

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000039:3153..7861-

transcript sequence

>TCONS_00004090 ID=TCONS_00004090|Name=TCONS_00004090|organism=Clytia hemisphaerica|type=transcript|length=3104bp
CGCGACCAcaaaattctctcaaaaattaatgaatgaaaaaagaatcaaaa
aaagaagaaataaatcaaaactttcttCTTCGGCATGGAATCTTCTTCAA
TCTATCATACCGAAGATCGGGATAGGAGCGGCGGAGATCTATCCGATGCA
AGGACACTTATTCAGAATTGTGAATACGATGTATACTCGATGTTCggaat
aaaaagagaaaaacattcGGTCCATAGCCAATACAAAATTGGCAGGATCA
TCGGGGATGGCAACTTTGCTATCGTTCGGGAATGCAGGGATAGaaaaaca
cAAAAGCCATTTGCCCTGAAAATCATCAACAAAGCCAAAGTCAAAGGAAA
GGAACATATGATCGAAAATGAAATTCTTATTTTACGGAAAATTAGTCATC
CCAACATTGTCAAACTTCACGAGGAATTCGAAACACCCAAAGAAATCTAT
CTCGTTATGGAGCTAGTACCGGGAGGTGATCTGTTCGACGCCATTGTAGA
CAACACACGTTTCTCTGAGCCTGAGTCCGCTTACATGGTCCACGATTTAG
CCTCTGCTATTTTATATTTACACGAACTGAATATTGTCCATCGTGACGTC
AAACCAGAGAACTTATTAATCGTCAACCGCGAAGACGGTCGAAAATCTAT
TAAACTTGCAGACTTTGGACTTTCTATAGAAGTCAAATCTCCCATGTTTT
TAGTATGCGGTACTCCCACTTATGTAGCACCGGAAATCCTGGATGAATCC
GGGTACGGCCTTGAAGTGGACAACTGGGCCATTGGAGtgatttgttatat
tttattgtGTGGTTTTCCACCTTTCCGCAGCACCAATCATGATCAGgaag
aactttttgataaaattttacgAGGAGATTATGAATATTTGAAACCTTTT
TGGAATGATGTGGGAGATGGGCCAAGGGACCTAATAGACAGGCTACTTGT
GGTCGATGCAAGTGAACGATATACTGCTAAAGAAATCCTTCAACACTTCT
GGATAAAGAAATGGACAGAACCAGTGGAGAAGATACATCGAGAATTATCA
CAAGCGGAAGAAGCCAACATGAAAAACAGGAAGCGTCTGCGTGGTATCGC
TCTCGCTATCCAATCGGTAATCTCTTTACTTCATCTTGTGCGTTCTAGAA
ATAATTCAACATTATCTTCTTCTCTTCAACCAGAAGATGAAGATTCAACT
TCCAGATCTTCACCACAAGCGAGTAGCCGCATTCCGCGCCCTACTTCAGC
TTCATCTAGTCCTAACGTCACCAACTTTCGAAAAGGCACTACCACTCCAG
TCAAGCGACGTGGTATTTCGTCTGCTGGGTCCAGGCGAATCCCCTACGAT
CAACCGGATTATTCTCTTAAGAAAGGCTTCTTGAAACGAGAGGAAAAAGT
CGATACGGGtactttaaagaaaaagaaagttgcAGGCCGAAGTAAGATTT
CAGTACCGACCACACCTGTACGTAAACCAAAAACTGTCAAACCGGCCGCA
GAACCTTCCTTAGCTGTGACTTCCTTCAAAGATAATCAAGTACGATTCCG
ACCATGTTCAGTCATCGATATCCGAGTTGACGTGGAAGTCACAGAGCGAC
CTGAACGACCTGGTAGTGCCCAAGGGTACCGAAAAAAACCAACAGATACG
CGCAAAGTAAAAGACACTATAACATCAGTGAAAGAAAAGACTGACACCAA
AGTGAAGAAGACTCCAACAACAACCACCGTCGAGAAAACAGAGGTGAAAC
TTGTTTCGAAATCTTCGTCTGATAACATTGTTGGGGATTCGAGTGGAGTT
GCTTCCAACGGTGTGAAACTACGTAAGAAAACGTCGCGTACGACACGTCC
GAATACCATGTTAGAGTTAAGTACTTCCGCAGCAACGACCAAAGAGAGCG
CCGTAACTACGTCTTCGAATAAACagaaagatgtgaaagatgtcAAGGAA
GCAGCGAAGAATAACATCTCTTCCGCCAAACGATCGCGACCAGTAAGCCT
AATGATCAACAAAGAGAAAGCTTCCTCGTCAAGAAAATCTTTAACACCTT
CTACTGAAGAATTCAACAGGAAACGAATGCAATATCGCCTGAACGACCAA
TTACATTcccttgatgaaaatattaaacaagATAACTCAGGACGCATGTC
TCCTAAGAAAAACTCCAAATTCAATTTATCGAATTTAAGTTCGCCTCGTT
GTCGCTCACCTACCAGGAAAAAAGAAACAACATCTGCAAAATctacaaaa
gaaaatagacCTGATGCAAAACCTCTCCCTGTTCGACCAGCAAGCTCTTT
AGCTACCACGAACAGAGATCGCTCAAGTTCACTTTCTCGACGTACTCCTA
AAAACGAAAGGTCACCTATTCGTCCGGCTACTACCATACCGCCTTCTCCA
AAGAAAACAATAAGAGAACGTTCAGCGAGTGGCAATCGCTCCACCATCAC
CACAAAACGAGCAACCACCATAACCACGCCGAAAAACTCAGCTACAACAC
CGAGCGTCGGCTCTCCCAGCACAGCCAGAAAGCCGAAAAGCACACCAACC
AAAGTAGGAACATGGAACGTTGGGACAGCAGTCCAATATAAAGCCCCAAA
CAGTCTCCGTAAACCTTTATCCCCTAAAAAAACAGTGAACACAAAAACAA
CGAATAGTCCGAAGCATGTTCGACGGAAAACGAGTGAAGCGGGGAAAGTC
CGTATTACCACTGAAGTGAATAAGAGAAAAAATATAACCTTCCCGGACGG
TAAGAAAGTAGATAAAGAGACCAATACAAAAACAACCGTCTCTGTAGATA
TGAATGATTCAGAGGGAGATAAAACAGTGAAACGAGCTTCCTTGCTAGCT
AAAGTGAAAACACTTGCTCAAGAGATTGGTTCATTATCGAAACTTGAAAC
AGGACCTGTATCTGAGAGTTCTTCAGACTCCATTCAAGGTGTAGGAACAC
CTGTTCGTAGTCATAGTGACGTCATGGAAAGTGTCATTAAAGAAGATACT
GACCGTTTCAGTGAAACCGAATATTTATCTTTGTCCGAAAAACCCTAAAT
TTCGTCCGAAAAATGAAAGCGTATTATTGTAAATGAAGTtagaatatatt
ttta

Run BLAST on NCBI

transcript from alignment at sc0000039:3153..7861-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004090 ID=TCONS_00004090|Name=TCONS_00004090|organism=Clytia hemisphaerica|type=transcript|length=4709bp|location=Sequence derived from alignment at sc0000039:3153..7861- (Clytia hemisphaerica)
CGCGACCACAAAATTCTCTCAAAAATTAATGAATGAAAAAAGAATCAAAA
AAAGAAGAAATAAATCAAAACTTTCTTCTTCGGCATGGAATCTTCTTCAA
TCTATCATACCGAAGATCGGGATAGGAGCGGCGGAGATCTATCCGATGCA
AGGACACTTATTCAGAGTAAGTATAGAGGGACATCTCATGCATCCATCAT
TTACCAAAAGGAACCATCAATCAATCTTCAGACTTCCTTAGAGATCTGCC
ATTAATAAATGATTAAACTTTTTGTCAGTTATAATGACCCCCATTGACAA
TAACACACATAGAAACAGTCCTAATTTAATTTTTTTTAGCATTAAATTGT
TACTTTTAAACTTAAAACTGTTATAAAAGCTCCTAACTTATTTATTTTAG
TTTATAGCTGGTATGATAAATCAGTGGATATCTTCAAATTGATGATAATA
ACCAGTGAAATATTTTGTTGAATTCATTGATTTCTATAAACGAATGACAC
AGTCATTTCCTCTAGCATTGTGACATAACTCATTTAATGATTAATAACTC
CAACCCTATTAACAGCTTAATAGAAGCATCAACTGTTTAAAGTAGTGAGT
GATAAAGAAAATCATTTGATTGCAAGCAAGCAGTCTGACGAAAAGTAGCG
TAGTGATCAGAGCACTTTTTCCTTGTGAACTAAAATTCGACTCTTGAGAA
AAATCAATATTATTTTTAGCGAACTTTTTCTTTTGTTTTGGTATTGCGAT
ATAAGTGCTGTGTGTGTTGAACAGATTAAATGATTTATATACCATGTTTT
ATCTTATACCTCTTGTCATTCGATTACAGCATCTCTCAAAAACATGTCTT
AGTGTTCAAAGTGAAACATTTTGACCAAAACAGATTTCGACTTATCATTT
TTCTCATACTTTCTTATCTTTCAGATTGTGAATACGATGTATACTCGATG
TTCGGAATAAAAAGAGAAAAACATTCGGTCCATAGCCAATACAAAATTGG
CAGGATCATCGGGGATGGCAACTTTGCTATCGTTCGGGAATGCAGGGATA
GGTAAGTCAAATTATACCCCTCAAAAGTTGTTTCATTTTATTTCTCGTTT
TTATTGTGGTTTCATGTTGATATTTTGAATTTGTATTTTCTTCTTTTCAG
AAAAACACAAAAGCCATTTGCCCTGAAAATCATCAACAAAGCCAAAGTCA
AAGGAAAGGTAAGTGTACCTACATCGAAAATACTCAATGTGGGTCATCAA
AACAAAAGAAGAATACTTTTGAAAATTTTGCTCAATATGGGTCTTCATAA
CAAAGCAAACTTTGTGGATTTTACTCAATGTTGGTGATCAAAACAGAGAA
ATCTGCCTGAGAATGGTTTGGTCAATGAATTGAATTGTGCGTTTTTGTTT
CTTTTAGGAACATATGATCGAAAATGAAATTCTTATTTTACGGAAAATTA
GTCATCCCAACATTGTCAAACTTCACGAGGAATTCGAAACACCCAAAGAA
ATCTATCTCGTTATGGAGCTAGTACCGGTAAGAAAAGAAGAGTTTTTTGT
CATATTTGTCACGTAGGAATTAAAAAAAGCTCTAAGCTCTCAAACATACG
TCTGTGATTATTTTGATTCGTATATTTTCTCAGATGAATAGCATTATAAT
TTGTAATCCAATTTTTCATCGTGATGATTATTCTCTACTCTTCTTTTCAG
GGAGGTGATCTGTTCGACGCCATTGTAGACAACACACGTTTCTCTGAGCC
TGAGTCCGCTTACATGGTCCACGATTTAGCCTCTGCTATTTTATATTTAC
ACGAACTGAATATTGTCCATCGTGACGTCAAACCAGAGAACTTATTAATC
GTCAACCGCGAAGACGGTCGAAAATCTATTAAACTTGCAGACTTTGGACT
TTCTATAGAAGTCAAATCTCCCATGTTTTTAGTATGCGGTACTCCCACTT
ATGTAGCACCGGAAATCCTGGATGAATCCGGGTACGGCCTTGAAGTGGAC
AACTGGGCCATTGGAGTGATTTGTTATATTTTATTGTGTGGTTTTCCACC
TTTCCGCAGCACCAATCATGATCAGGAAGAACTTTTTGATAAAATTTTAC
GAGGAGATTATGAATATTTGAAACCTTTTTGGAATGATGTGGGAGATGGG
CCAAGGGTATGTTTACATTGTAATTGGCTTTGATGCCTTATTTCGAACTC
TATATTCGTTCCGACTTCACTAATTTCCATGTTTTATTTTAAGCTTTGGA
AATTTATATTCCAAATTTTCCGCTTAGGCTTACATTCAGACGTTTGGTGA
TAATTTGTTGACTTTATATTTTGCAGGACCTAATAGACAGGCTACTTGTG
GTCGATGCAAGTGAACGATATACTGCTAAAGAAATCCTTCAACACTTCTG
GATAAAGGTAAGTTTTCTTCGTGACATCACCTAATCAATCATTTAAGTGA
GAAGAATAGAAATAAATCAAGGGTAACATTCAAGTAATTTNGGATAAAGG
TAAGTTTTCTTCGTGACATCACCTAATCAATCATTTAAGTGAGAAGAATA
GAAATAAATCAAGGGTAACATTCAAGTAATTTTACTTCAGTAATTTTCTG
TTTTTCGTTTTAGAAATGGACAGAACCAGTGGAGAAGATACATCGAGAAT
TATCACAAGCGGAAGAAGCCAACATGAAAAACAGGAAGCGTCTGCGTGGT
ATCGCTCTCGCTATCCAATCGGTAATCTCTTTACTTCATCTTGTGCGTTC
TAGAAATAATTCAACATTATCTTCTTCTCTTCAACCAGAAGATGAAGATT
CAACTTCCAGATCTTCACCACAAGCGAGTAGCCGCATTCCGCGCCCTACT
TCAGCTTCATCTAGTCCTAACGTCACCAACTTTCGAAAAGGCACTACCAC
TCCAGTCAAGCGACGTGGTATTTCGTCTGCTGGGTCCAGGCGAATCCCCT
ACGATCAACCGGATTATTCTCTTAAGAAAGGCTTCTTGAAACGAGAGGAA
AAAGTCGATACGGGTACTTTAAAGAAAAAGAAAGTTGCAGGCCGAAGTAA
GATTTCAGTACCGACCACACCTGTACGTAAACCAAAAACTGTCAAACCGG
CCGCAGAACCTTCCTTAGCTGTGACTTCCTTCAAAGATAATCAAGTACGA
TTCCGACCATGTTCAGTCATCGATATCCGAGTTGACGTGGAAGTCACAGA
GCGACCTGAACGACCTGGTAGTGCCCAAGGGTACCGAAAAAAACCAACAG
ATACGCGCAAAGTAAAAGACACTATAACATCAGTGAAAGAAAAGACTGAC
ACCAAAGTGAAGAAGACTCCAACAACAACCACCGTCGAGAAAACAGAGGT
GAAACTTGTTTCGAAATCTTCGTCTGATAACATTGTTGGGGATTCGAGTG
GAGTTGCTTCCAACGGTGTGAAACTACGTAAGAAAACGTCGCGTACGACA
CGTCCGAATACCATGTTAGAGTTAAGTACTTCCGCAGCAACGACCAAAGA
GAGCGCCGTAACTACGTCTTCGAATAAACAGAAAGATGTGAAAGATGTCA
AGGAAGCAGCGAAGAATAACATCTCTTCCGCCAAACGATCGCGACCAGTA
AGCCTAATGATCAACAAAGAGAAAGCTTCCTCGTCAAGAAAATCTTTAAC
ACCTTCTACTGAAGAATTCAACAGGAAACGAATGCAATATCGCCTGAACG
ACCAATTACATTCCCTTGATGAAAATATTAAACAAGATAACTCAGGACGC
ATGTCTCCTAAGAAAAACTCCAAATTCAATTTATCGAATTTAAGTTCGCC
TCGTTGTCGCTCACCTACCAGGAAAAAAGAAACAACATCTGCAAAATCTA
CAAAAGAAAATAGACCTGATGCAAAACCTCTCCCTGTTCGACCAGCAAGC
TCTTTAGCTACCACGAACAGAGATCGCTCAAGTTCACTTTCTCGACGTAC
TCCTAAAAACGAAAGGTCACCTATTCGTCCGGCTACTACCATACCGCCTT
CTCCAAAGAAAACAATAAGAGAACGTTCAGCGAGTGGCAATCGCTCCACC
ATCACCACAAAACGAGCAACCACCATAACCACGCCGAAAAACTCAGCTAC
AACACCGAGCGTCGGCTCTCCCAGCACAGCCAGAAAGCCGAAAAGCACAC
CAACCAAAGTAGGAACATGGAACGTTGGGACAGCAGTCCAATATAAAGCC
CCAAACAGTCTCCGTAAACCTTTATCCCCTAAAAAAACAGTGAACACAAA
AACAACGAATAGTCCGAAGCATGTTCGACGGAAAACGAGTGAAGCGGGGA
AAGTCCGTATTACCACTGAAGTGAATAAGAGAAAAAATATAACCTTCCCG
GACGGTAAGAAAGTAGATAAAGAGACCAATACAAAAACAACCGTCTCTGT
AGATATGAATGATTCAGAGGGAGATAAAACAGTGAAACGAGCTTCCTTGC
TAGCTAAAGTGAAAACACTTGCTCAAGAGATTGGTTCATTATCGAAACTT
GAAACAGGACCTGTATCTGAGAGTTCTTCAGACTCCATTCAAGGTGTAGG
AACACCTGTTCGTAGTCATAGTGACGTCATGGAAAGTGTCATTAAAGAAG
ATACTGACCGTTTCAGTGAAACCGAATATTTATCTTTGTCCGAAAAACCC
TAAATTTCGTCCGAAAAATGAAAGCGTATTATTGTAAATGAAGTTAGAAT
ATATTTTTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002281	XLOC_002281	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:3153..7861 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39929	2.11088e-05	1.80318	1.70829	4.3095	2.81337	6.11774	11.7562	12.0567	25.0625	6.68697	13.6888	21.2628	15.2873	29.7692	27.0198	4.55876	17.3692	12.2416	15.8771	6.37127	6.75533	6.81002	4.70591	8.38257	4.26592	19.1224	20.1178	15.7	14.4337

Blast

[Close]

BLAST of TCONS_00004090 vs. Swiss-Prot (Human)
Match: DCLK3 (Serine/threonine-protein kinase DCLK3 OS=Homo sapiens GN=DCLK3 PE=2 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 7.107e-109
Identity = 156/264 (59.09%), Postives = 212/264 (80.30%), Query Frame = 1

Query:  217 SVHSQYKIGRIIGDGNFAIVRECRDRKTQKPFALKIINKAKVKGKEHMIENEILILRKISHPNIVKLHEEFETPKEIYLVMELVPGGDLFDAIVDNTRFSEPESAYMVHDLASAILYLHELNIVHRDVKPENLLIVNREDGRKSIKLADFGLSIEVKSPMFLVCGTPTYVAPEILDESGYGLEVDNWAIGVICYILLCGFPPFRSTNHDQEELFDKILRGDYEYLKPFWNDVGDGPRDLIDRLLVVDASERYTAKEILQHFWIK 1008
            +V   Y+ GR+IGDGNFA+V+ECR R+T++ +A+KII+K+++KGKE M+++EILI++ +SHPNIVKLHE +ET  EIYL++E V GGDLFDAI+++ +F EP++A M+ DL  A++++H+ +IVHRD+KPENLL+   ED   ++KLADFGL+  V  P+F VCGTPTYVAPEIL E GYGLEVD WA GVI YILLCGFPPFRS   DQ+ELF+ I  G +E+L P+W+++ D  +DL+ RLLVVD  +RYTA ++LQH WI+
Sbjct:  351 NVEKHYETGRVIGDGNFAVVKECRHRETRQAYAMKIIDKSRLKGKEDMVDSEILIIQSLSHPNIVKLHEVYETDMEIYLILEYVQGGDLFDAIIESVKFPEPDAALMIMDLCKALVHMHDKSIVHRDLKPENLLVQRNEDKSTTLKLADFGLAKHVVRPIFTVCGTPTYVAPEILSEKGYGLEVDMWAAGVILYILLCGFPPFRSPERDQDELFNIIQLGHFEFLPPYWDNISDAAKDLVSRLLVVDPKKRYTAHQVLQHPWIE 614

The following BLAST results are available for this feature:

BLAST of TCONS_00004090 vs. Swiss-Prot (Human)

BLAST of TCONS_00004090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCLK3	7.107e-109	59.09	Serine/threonine-protein kinase DCLK3 OS=Homo sapi...	[more]

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TCONS_00004090 (transcript) - C. hemisphaerica