TCONS_00004077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004077
Unique NameTCONS_00004077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004077 ID=TCONS_00004077|Name=TCONS_00004077|organism=Clytia hemisphaerica|type=transcript|length=501bp
GTAaaagttaaatctttaaaagacTACACAGAAATGAGATGGTTTCCATA
ACTTTGGAAGATGTTGTTTATATTGTTGTTGTTTCAATATTATGGGGTGC
TACCAATCCTTTCTTGAGACAAGGATCAAaaggtttggaaaaaatcaagC
ATGAAAggtttcttcatcaaattttggcAGAGCTGACTCACTTGTGTAAG
AACTGGAAATTTACACTACCATTTCTACTAAACCAGTCTGGGTCtgtatt
ttataatattttggtTGCAAGATTGGATTTATCTTTAGCTGTTCCTGTTG
TAAACTCTTTGACATTTTTAATGACGATGCTAACTGGCGCATTCTTAAAA
GAAGATTTAACCAGaagaaaattgtttggttcATTTTTGGTTTTGTCAGG
GGTAACCTTGTGCGTCCTCGAAAAACTTGACCTTCTTAGTTAGggctgtt
tgaaatttttgttactAATTCCTTAAAGCTCCagttaaaaaaaagtgaaa
g
Run BLAST on NCBI

transcript from alignment at sc0000039:775326..775826+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004077 ID=TCONS_00004077|Name=TCONS_00004077|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0000039:775326..775826+ (Clytia hemisphaerica)
GTAaaagttaaatctttaaaagacTACACAGAAATGAGATGGTTTCCATA
ACTTTGGAAGATGTTGTTTATATTGTTGTTGTTTCAATATTATGGGGTGC
TACCAATCCTTTCTTGAGACAAGGATCAAaaggtttggaaaaaatcaagC
ATGAAAggtttcttcatcaaattttggcAGAGCTGACTCACTTGTGTAAG
AACTGGAAATTTACACTACCATTTCTACTAAACCAGTCTGGGTCtgtatt
ttataatattttggtTGCAAGATTGGATTTATCTTTAGCTGTTCCTGTTG
TAAACTCTTTGACATTTTTAATGACGATGCTAACTGGCGCATTCTTAAAA
GAAGATTTAACCAGaagaaaattgtttggttcATTTTTGGTTTTGTCAGG
GGTAACCTTGTGCGTCCTCGAAAAACTTGACCTTCTTAGTTAGggctgtt
tgaaatttttgttactAATTCCTTAAAGCTCCagttaaaaaaaagtgaaa
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002279XLOC_002279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004077-exon-sc0000039-1491911889:775326..775826TCONS_00004077-exon-sc0000039-1491911889:775326..775826Clytia hemisphaericaexon
TCONS_00004077-exon-sc0000039-1510915933:775326..775826TCONS_00004077-exon-sc0000039-1510915933:775326..775826Clytia hemisphaericaexon
TCONS_00004077-exon-sc0000039-1575043694:775326..775826TCONS_00004077-exon-sc0000039-1575043694:775326..775826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:775326..775826 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.6194	85.3062	31.2278	26.1101	6.39009	4.66111	7.4979	7.16568	10.3409	6.59466	4.06213	6.47342	8.40375	6.20986	10.9696	10.1432	12.4044	10.4705	3.09975	7.16309	16.0937	14.0955	41.3746	40.5285	4.56569	6.05394	13.1614	6.57858	22.251	25.8303
Blast
[Close]
BLAST of TCONS_00004077 vs. Swiss-Prot (Human)
Match: TM234 (Transmembrane protein 234 OS=Homo sapiens GN=TMEM234 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.233e-23
Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:   93 WGATNPFLRQGSKGLEKIKHERFLHQILAELTHLCKNWKFTLPFLLNQSGSVFYNILVARLDLSLAVPVVNSLTFLMTMLTGAFLKEDL-TRRKLFGSFLVLSGVTLCV 416
            WG T P L++ S GL+++    +  Q+L E+  L  N ++ +PFLLNQ GS+ Y + +A  DL+LAVP+ NSL  + T++ G  L ED+  +R + G  L + G++LC+
Sbjct:   18 WGGTQPLLKRASAGLQRVHEPTWAQQLLQEMKTLFLNTEYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVIGISLCI 126
The following BLAST results are available for this feature:
BLAST of TCONS_00004077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2342.233e-2339.45Transmembrane protein 234 OS=Homo sapiens GN=TMEM2... [more]
back to top