TCONS_00004058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004058
Unique NameTCONS_00004058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004058 ID=TCONS_00004058|Name=TCONS_00004058|organism=Clytia hemisphaerica|type=transcript|length=1160bp
AGCATGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAAT
GCTCGACGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACG
TGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAGATCTCTCCTC
AAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCAGACAAA
GATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGGTAGT
GGCGGTGTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTACCCTCAGGTGC
ACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATTGCTGGAGAGA
ACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCATGACAATGAAAGAT
GGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCCAAATGGGTGGTCAC
TGCATCTCATTGCATCGATAAACAACAAGCTTCCAATATCCAAATCGTCT
TAGGCGGTCACGATTTAAACCATCCATCTGGTAGCGAACAAACTCGAAAT
GTGAAACGCCTTATTATGCATCCTTCATACGGACGCTTGAACAATGATAT
TGCATTGATCGAACTCGACCGTCCAGTAATGTTCACTGATCGTATACAGC
CTGTGTGTTTGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGCAAATGC
TACTTGACTGGCTGGGGAAAGATTCAACATCCAGGAAGCTCACATCCAAT
CCTTCAACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTAACAGAT
TGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGCCAAC
CCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTTGT
CTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTGGG
GCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTGTC
TCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGATTGGTTA
AATTAAcgattatattatttttttagcaaagtTTTCTTTCTCAACGAACA
AAGATCGCAAAATTAGAACATAAAAGACAGAGATAATACATCAAATTATA
TCCACTTAAG
Run BLAST on NCBI

transcript from alignment at sc0000039:636421..642446+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004058 ID=TCONS_00004058|Name=TCONS_00004058|organism=Clytia hemisphaerica|type=transcript|length=6026bp|location=Sequence derived from alignment at sc0000039:636421..642446+ (Clytia hemisphaerica)
AGCATGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAAT
GCTCGACGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACG
TGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTGTGAGTGTGTTCTTCTCTG
AATATTTTCCCCCTCCTGTATTGTAGTTTTGAGATTGTTAGGTCAACCTC
CCCATAAGAACCCTGGAAAGCTCGAGGTCCttgacttttttctaaattcc
taacttttttcCGATAGGCTGAATTTTCCGAGTGAATTTCTGTATCGTTA
TTAGGATCATATTGCTCGAGTAAAAAAGGGCAACTTTCCGTCTGGGATCT
AAAGTGGTCAGGGGCTATGGCCTTCATCACCCAGTATGGTTGAAGGTTCA
TTTTCGATTTTATTTaatgcataatttcaatttgttGTCGTATTAGCATG
TCGAGATCTCTCCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACT
CTTACGTCAGACAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGC
GGAAGTGGCGGTAGTGGCGGTGTTCCAAGTAAGTGTTTAGACTTTCACCA
AAGTCTGTAAAAACCTCGGCCttgaagccttttgtttctttccattggaa
aacttgaacttgcgtttgTTTTGCTCGTTTGATCAAATCTCGAACCAATG
CCAAGAGGAGAACTTGAAAActtgatcaaaaactgagcacaAAGGGCACT
ATAAGGGTCGAAATGAACAAAtgtaaaaaatattacactctaagggtgta
aaatttggaaaatgttgCCATATTTCGCCTGAAaacggtcgtttttgaat
cgagtgcccccccccaggCCATGGAAATGTCGATAAAAAAATCTGACTTC
TTCGCCTAAACTGGAAAGAGTAGTAATACCAATAACAAAGGATATGTTGG
GGCTCTCCATAAAGCACACAAGTCAACTTGATTCATAAAACAACCACATC
CAGATCcttgaaaaatattctccaTTCTACCTTTGAAGGTTGCGCTGGCA
AAGGCACTGGGTTACCCTCAGGTAAGAATTACATTAAAATTCCAAGAAAC
TCGACCTAAAAATGGAAAGATAAAATGGACTCTTTTTGTCTTGGATATAT
ATATCtaagaatttcttttcttttgaagcATTTTATCAAGTCTAGCGAGT
TGAAATAAAACAAGTCCCTTACCTAATTTAAATCAATTAACTTGCAAATA
AGTTCACATACTTTCGAAGAAGATGAAATAACTGATAACTTCTGTCTATG
TATATTTCTACTCAAATTTAGGTGCACAATGCGGTCAAGTCAAAGTCAGT
TCATCAAGAGTCATTGCTGGAGAGAACGCAAAAGCTGGAGCATGGCCATG
GCAAATTGCCATGACAATGAAAGATGGGCGTTTTTTCTGTGGAGGATCTT
TGGTCAACGCCAAATGGGTGGTCACTGCATCTCATTGCATCGATAAACAA
CAAGCTTCCAATATCCAAATCGTCTTAGGTACACGATAGTTATTTTCTAA
GTAATCTAACAACCTGTGAATAGCTTCTTCGCCCTTTTTAAAGTCTAACA
TCACGTGACTATGGAGCGCCAAAAGAACAATAATAAATTCACTTATCTTT
TGGCTATCTTTACAACAGAGTCCCACGGGATATATAGTCGTAACCTTTTA
ATAATGTCGAGGTCGAGCTTTACAGAGAAAATCCGTGAGTAGTTGTTTAG
AAATGTTGAGTTTTTATCTGACGCAATATACCACTAAATCTCAAGATACa
aaatgaaaaggtattttgGAAGAACACGTGCTTTCTACAGGAAAATAGTA
CAAGCCAAAACTCTCATCCTTAAAAGGCAATCTTTTCGTTACAGGCGGTC
ACGATTTAAACCATCCATCTGGTAGCGAACAAACTCGAAATGTGAAACGC
CTTATTATGCATCCTTCATACGGACGCTTGAACAATGATATTGCATTGAT
CGAACTCGACCGTCCAGTAATGTTCACTGATCGTATACAGCCTGTGTGTT
TGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGCAAATGCTACTTGACT
GGTAAGAATCTCTTTCCATCAAACCTTTCGTCAAAGATTATAACATCCCT
GTCTAGCTAACATGCCGgaaaatttgttaatttttctaatttaaggcatg
gcaataaataattattttggaagCTACGCGTGAAAAAATAGAGAAGAATT
TAGTTACGATTCAGGCATGTAAAATACGCGTTAATGATTAAGGAAATTCA
AGTCTAAAATTTAAATCTAAGTTTTAATGTCAAAAGCTTGATATGCGCTA
TAATTTAATAATGCAAAACTTAGCCCACGTCTTAATATAGTAAGATTAAT
TGGGTTTTTTTGGAAGAGTAcgctttaaattaaaaaaagttacaatatCT
TGTATGATTTAtctatttttaaggttttgtattgctttatgtttttattt
ctgTTCTGTCACGCTTTTTTCACATAAAATTGAGGAATGATAGAatttgt
tggacctacctggaggtcctataaattaacctttgtccgtctgttaccct
gcttttctcgagattggctcattaattTGTTCCgcatttttgcataaaga
tgtgtattagcactgcccaaaaaaaaaaatccaggccaaaaatgccggaa
atatgccgggaaaaccggctttttggcattttctagagatttcatcattt
gtttttttctgaattttcgaACTAAGATGTAAATCagcaatgcctaaaat
atgacctagtccgattttcgatggaaatttttttctggccgaaaatgaca
gaaatatgccggaaatcaccgtttttgcagatttcatTGGATCTTTATaa
ttcatatttttgtttttcaaaaaaaagcatTATAATAAAATGCCCACGAT
TCAgtatggttcaattttcaatgaaactgattttggtagcCGGAACAGCC
GAAGATCACTAGGAAACCGTTCGCTCGTCCGTTCTTTTTTCACGATCTTT
TCCATCATCGCTTTAAACTACAGTCGACTTTCCATAACTTGAACCTCCTC
AACTCAATTATCTCCATAAACTCGAAAGATTTTTTCGGTCTCTTGAGAAG
ATTCTTAGACTATTCTGCCTCTCTATATCTCGAATTTCCATAACTGGAAC
AATTACTGATTATCCCCTGGGCGTTCCAGCACTCGACTATATTACACTTC
CCTACTTTAttttatttcgtattttcaacactttctctccttgagNNNNN
NNNNNNNNNNNNNccaaaaatgctggaaatatgccgggaaaaccggcttt
ttggcattttctagagatttcatcatttgtttttttctgaattttcgaAC
TAAGATGTAAATCagcaatgcctaaaatatgacctagtccgattttcgat
ggaaatttttttctggccgaaaatgacagaaatatgccggaaatcaccgt
ttttgcagatttcatTGGATCTTTATaattcatatttttgtttttcaaaa
aaaagcatTATAATAAAATGCCCACGATTCAgtatggttcaattttcaat
gaaactgattttggtagcCGGAACAGCCGAAGATCACTAGGAAACCGTTC
GCTCGTCCGTTCTTTTTTCACGATCTTTTCCATCATCGCTTTAAACTACA
GTCGGCTTCCCATAACTTGAACCTCCTCAACTCAATTATCTCCATAAACT
CGAAAGATTTTTTCGGTCTCTTGAGAAGATTCTTAGACTATTCTGCCTCT
CTATATCTCGAATTTCCATAACTGGAACAATTACTGATTATCCCCTGGGC
GTTCCAGCACTCGACTATATTACACTTCCCTACTTTAttttatttcgtat
tttcaacactttctctccttgaggtcagatctctgatcttcaccatatat
attcATCAGGTTTGTCCAATCAGCGTTCcggcttgttttttttttttggt
ttagtCGATTGATTGTAcattattttatagatttttttttctggttttGA
CAAGTTTTTGGTTTGTtgggtttgaaaatttacacacGTGTATGAAACAC
TCAAAAGGAAAACTCGTTGTTATCGAAACAATTTTTTACCTACTATGGTC
AGAGCCATTTTACAGAATGAGTCgtcttattttttgaataaatacatATT
CTTGATCTAAACTGATAAATAATTTTCAGGGTTAACGAGAAGGAGAGATG
ACTGAGTGGTCTGTGGTATCAGACCTCAACCATTTTACCGAAATATCATG
GTTATTTGAAAAGAGAATTTGATAGATTCAGCATCGccttttataaagtt
tttaaaatagtTGTATCTATTTCGAGTAGAACTTTCTTGGAGTGTTATTG
TTTGAGATGCCTTGTAAACTTTTTATAAGcttttgaggctgaaatttgta
AAAAGATCTTGAGAAATTATgtactgaaaatgaaatcaatGAGACAGGGG
GGTATACAACgaatagaaattgaaaataatctaaggctgaaaattaaatt
ttgctaaGTATGACGAGCCTCAGTTTTAATTTCCCGTATGCTTCTAAACC
TTGTGGCTTGTTTCTATGGCGGTGGTTAAGCAGAAAATGGCACTCTCATC
GgaggttttttattttttggcgagCCTTCTTCATAAGTTTTCATCTAGGA
GAAAATGCAAACGAGAGAAATTTTGAACTATGAAAATTCATTGGAAGCAG
TCCCAAGCCatggtttttcaaaatttattttttgatagcAGCACCTGAAA
AGTCTTCAAGTAGTGCCCATTCTCCGAGGGAACTGCTGCGGAGGACACTG
ACCACTCCCATTACACCTTCACAAAACCATGACAAAATGTTTTAACTTTA
TAAAAGATTTAAACAAGACTAGTAATGATGCTGATAAGActcattcattt
ttatttaacaaCAGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACATC
CAATCCTTCAACAAGTTGGCTTAACTATACAAGAAAATTCTCAATGTAAC
AGATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGC
CAACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCAC
TTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGT
TGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCG
TGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGATTT
GTTAAATTAACGANGAATGCAAACGAGAGAAATTTTGAACTATGAAAATT
CATTAGAAGCAGTCCCAAGCCatggtttttcaaaatttattttttaatag
cAGCACCTGAAAAGTCTTCAAGTAGTGCCCATTCTCCGAAGGAACTGCTG
CGGAGGACACTGACCACTCCCATTACACCTTCACAAAACCATGACAAAAT
GTTATAAGTTTATAAGAGCTTTAAACAAGACTAGTAATGATGCTGATAAG
ActcattcatttttatttaacaaCAGGTTGGGGAAAGATTCAACATCCAG
GAAGCTCACATCCAATCCTTCAACAAGTTGGCCTAACTATACAAGAAAAT
TCTCAATGTAACAGATTGAACTCAAAATACGTCCCCATCTCACAACAAAT
GGTATGCGCGGCCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACA
GCGGTGGCCCACTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCAT
GGGGCTGTCAGTTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGAC
TGTTTTTGCTCGTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCA
ACAACTAGATTGGTTAAATTAAcgattatattatttttttagcaaagtTT
TCTTTCTCAACGAACAAAGATCGCAAAATTAGAACATAAAAGACAGAGAT
AATACATCAAATTATATCCACTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002272XLOC_002272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004058-exon-sc0000039-1491911889:636421..636551TCONS_00004058-exon-sc0000039-1491911889:636421..636551Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1510915933:636421..636551TCONS_00004058-exon-sc0000039-1510915933:636421..636551Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1575043694:636421..636551TCONS_00004058-exon-sc0000039-1575043694:636421..636551Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1491911889:636867..636998TCONS_00004058-exon-sc0000039-1491911889:636867..636998Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1510915933:636867..636998TCONS_00004058-exon-sc0000039-1510915933:636867..636998Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1575043694:636867..636998TCONS_00004058-exon-sc0000039-1575043694:636867..636998Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1491911889:637459..637491TCONS_00004058-exon-sc0000039-1491911889:637459..637491Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1510915933:637459..637491TCONS_00004058-exon-sc0000039-1510915933:637459..637491Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1575043694:637459..637491TCONS_00004058-exon-sc0000039-1575043694:637459..637491Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1491911889:637742..637948TCONS_00004058-exon-sc0000039-1491911889:637742..637948Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1510915933:637742..637948TCONS_00004058-exon-sc0000039-1510915933:637742..637948Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1575043694:637742..637948TCONS_00004058-exon-sc0000039-1575043694:637742..637948Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1491911889:638315..638521TCONS_00004058-exon-sc0000039-1491911889:638315..638521Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1510915933:638315..638521TCONS_00004058-exon-sc0000039-1510915933:638315..638521Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1575043694:638315..638521TCONS_00004058-exon-sc0000039-1575043694:638315..638521Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1491911889:641385..641402TCONS_00004058-exon-sc0000039-1491911889:641385..641402Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1510915933:641385..641402TCONS_00004058-exon-sc0000039-1510915933:641385..641402Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1575043694:641385..641402TCONS_00004058-exon-sc0000039-1575043694:641385..641402Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1491911889:642015..642446TCONS_00004058-exon-sc0000039-1491911889:642015..642446Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1510915933:642015..642446TCONS_00004058-exon-sc0000039-1510915933:642015..642446Clytia hemisphaericaexon
TCONS_00004058-exon-sc0000039-1575043694:642015..642446TCONS_00004058-exon-sc0000039-1575043694:642015..642446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:636421..642446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74895	1.39403	0.235328	0.727861	0.251544	0.119264	0.623511	0	0.946217	0.226149	2.83097	1.03409	12.7556	5.63048	1.70658	1.70615	8.77767	8.40874	103.708	101.451	38.2507	45.3559	89.4532	113.814	0	0	4.29412	2.36456	1.82188	0.598393
Blast
[Close]
BLAST of TCONS_00004058 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.272e-47
Identity = 95/235 (40.43%), Postives = 130/235 (55.32%), Query Frame = 2 
Query:  326 SSRVIAGENAKAGAWPWQIAMTMKDGRFFCGGSLVNAKWVVTASHCIDKQQASNIQIVLGGHDLNHPSGSEQTRNVKRLIMHPSYGR--LNNDIALIELDRPVMFTDRIQPVCLPEPTEQPAVGSKCYLTGWGKIQHPGSSHPI-LQQVGLTIQENSQCNRLNSKYVPISQQMVCAANPGTRQMGCHGDSGGPLVCQQPDGSFKLHGAVSWGSPTCTASDAWTVFARVSVFRNWL 1021
            S R++ GENA  G+WPWQ+++    G  FCGGSL++  WVVTA+HC          +VLG +D +  +   Q  +V R I HPS+    +NND+ L++L  P  +T RI PVCL    E    G  C  TGWG++   G+  P  LQQV L +   +QC +       I+  M+CA   G     C GDSGGPLVCQ+ + ++ L G VSWG+  C    A  V+ RVS F  W+
Sbjct:   31 SQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWGS--SITDSMICAGGAGASS--CQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNV-RAPAVYTRVSKFSTWI 257
The following BLAST results are available for this feature:
BLAST of TCONS_00004058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL7.272e-4740.43Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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