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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004044 ID=TCONS_00004044|Name=TCONS_00004044|organism=Clytia hemisphaerica|type=transcript|length=628bp
CAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAATCTCC
ATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGTGATC
ATTTTGTCAATTCTATTCAACAATTCTGTCAAGATCTTTCAATACCATTT
GTCAAATTGATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACGCGAG
AATTGTTGAGCAATTATTCAACCTCATCATTAATAACAACATTTTGTTGA
ATGATCATCAAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTGGATG
GAACTCATTGATGTTTATTTGAATAAGCAGCACATTGAAATGATGCATCA
GCCACTTTTTATTGCCTTGATGATAAAAACAACGGCGACTGATCATAAGC
ATGCAAGAAATTGCTGGCTCCTTGTTGGAAAGGAAGACTTTTTTGATCAG
AAATCACTTCATTTTGCACACAATGCTTTTTCAATTGTTCAGAACCTGGA
TTTCCATCTGGCTTATTCTGGCAATACAACCATTCAAATGTTAAGAAATG
AATTGAAGATTTACTTGACAGCAACAAACTTCCATTTTTGTTATGAAGGA
GACTTTACTTTGTGGGTATCTGATATTG Run BLAST on NCBI protein sequence of TCONS_00004044-protein >TCONS_00004044-protein ID=TCONS_00004044-protein|Name=TCONS_00004044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
QMDVISMLTKLELKESPLENVVTFGRFMKAFGDHFVNSIQQFCQDLSIPF
VKLINTAVEYVLKDHARIVEQLFNLIINNNILLNDHQIQSRVVGLVHFWM
ELIDVYLNKQHIEMMHQPLFIALMIKTTATDHKHARNCWLLVGKEDFFDQ
KSLHFAHNAFSIVQNLDFHLAYSGNTTIQMLRNELKIYLTATNFHFCYEG
DFTLWVSDI Run BLAST on NCBI transcript from alignment at sc0000039:554528..556083+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004044 ID=TCONS_00004044|Name=TCONS_00004044|organism=Clytia hemisphaerica|type=transcript|length=1556bp|location=Sequence derived from alignment at sc0000039:554528..556083+ (Clytia hemisphaerica)
CAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAATCTCC
ATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGTGATC
ATTTTGTCAATTCTATTCAACAATTCTGTCAAGTAAGTGCTTATTCTCAA
TGTGTTTTTTAAGAGAACGATTGACAGTTACAGGCTTGAGCCCAAATTTA
GGTGAATTGGAATAATCCTAAAATtggtaaaaacataaaaattataaaaa
ttttgggaaaatataTGCAAAAGctataaagaaagaaagaaaccaACACC
AAAGAAGGCAGTTCTTTTAAGCCATATTTCTTAGTACCAATTTGCTCTTC
TAAATTTCAGGTTTTGAATTATGGTAGAAATACAGTAAATTCATTACAAC
TGGTTTAATGCATTGATGCAATTATCAGTTGGATTTTAAGGAAAGAATTT
GCATTGATGCAATCTTCAGttggattttaagaaaaagattgCATCAATAC
ATGAAACCAGTGGTATTGGCATAGAAAAATAATGTTTCTTTTAATGAAGT
TATTTGTTCTGCAGTAGTATCGAGCACTCTAATTGTGAAGATACAATTTA
CAAGCAGAAATACAGTATGTAATTGGAATACTTGAAAGACTTGCTTTTGC
TTTTTGCAGGATCTTTCAATACCATTTGTCAAATTGATCAATACTACTGT
TGAGNTGCTTTTGCTTTTTACAGGATCTTTCAATACCATTTGTCAAATTG
ATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACGCGAGAATTGTTGA
GCAATTATTCAACCTCATCATTAATAACAACATTTTGTTGAATGATCATC
AAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTGGATGGAACTCATT
GATGTTTATTTGAATAAGCAGCACATTGAAATGATGCATCAGCCACTTTT
TATTGCCTTGATGATAAAAACAACGGCGACTGATCATAAGGTTACTTCAT
CAATATgctctcaattttttttactcaGACTCTAGAAGTTTGCTACAAAC
TTTTTTgtctaaattttttatttttgttgttgttgttttgtttttttttt
gtaatagaAGCAGTCTTCTATGTAAATAAGTAGGATGGAAATGGTCTAAA
TTTTTGTCTTAATGAATATtcaattaaaattaatttttctattCAAAAGC
CtagaaataaaattttgtaatttcctggTTTAATTTATCAGCCTTATAGC
AATAGCATGAAAATGTGTGTAACAATATTGTAACAGGTGCTTATGTAATG
AGTTATTTTATTCTACTTTTACCTTAGCATGCAAGAAATTGCTGGCTCCT
TGTTGGAAAGGAAGACTTTTTTGATCAGAAATCACTTCATTTTGCACACA
ATGCTTTTTCAATTGTTCAGAACCTGGATTTCCATCTGGCTTATTCTGGC
AATACAACCATTCAAATGTTAAGAAATGAATTGAAGATTTACTTGACAGC
AACAAACTTCCATTTTTGTTATGAAGGAGACTTTACTTTGTGGGTATCTG
ATATTG Coding sequence (CDS) from alignment at sc0000039:554528..556083+ >TCONS_00004044 ID=TCONS_00004044|Name=TCONS_00004044|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at sc0000039:554528..556083+ (Clytia hemisphaerica)
CAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAATCTCC
ATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGTGATC
ATTTTGTCAATTCTATTCAACAATTCTGTCAAGATCTTTCAATACCATTT
GTCAAATTGATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACGCGAG
AATTGTTGAGCAATTATTCAACCTCATCATTAATAACAACATTTTGTTGA
ATGATCATCAAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTGGATG
GAACTCATTGATGTTTATTTGAATAAGCAGCACATTGAAATGATGCATCA
GCCACTTTTTATTGCCTTGATGATAAAAACAACGGCGACTGATCATAAGC
ATGCAAGAAATTGCTGGCTCCTTGTTGGAAAGGAAGACTTTTTTGATCAG
AAATCACTTCATTTTGCACACAATGCTTTTTCAATTGTTCAGAACCTGGA
TTTCCATCTGGCTTATTCTGGCAATACAACCATTCAAATGTTAAGAAATG
AATTGAAGATTTACTTGACAGCAACAAACTTCCATTTTTGTTATGAAGGA
GACTTTACTTTGTGGGTATCTGATATTCAAATGGATGTTATATCAATGCT
TACAAAATTGGAATTGAAAGAATCTCCATTGGAAAATGTTGTTACATTTG
GACGATTCATGAAGGCATTTGGTGATCATTTTGTCAATTCTATTCAACAA
TTCTGTCAAGATCTTTCAATACCATTTGTCAAATTGATCAATACTGCTGT
TGAGTATGTGCTTAAAGATCACGCGAGAATTGTTGAGCAATTATTCAACC
TCATCATTAATAACAACATTTTGTTGAATGATCATCAAATACAAAGTCGA
GTCGTAGGACTGGTACATTTTTGGATGGAACTCATTGATGTTTATTTGAA
TAAGCAGCACATTGAAATGATGCATCAGCCACTTTTTATTGCCTTGATGA
TAAAAACAACGGCGACTGATCATAAGCATGCAAGAAATTGCTGGCTCCTT
GTTGGAAAGGAAGACTTTTTTGATCAGAAATCACTTCATTTTGCACACAA
TGCTTTTTCAATTGTTCAGAACCTGGATTTCCATCTGGCTTATTCTGGCA
ATACAACCATTCAAATGTTAAGAAATGAATTGAAGATTTACTTGACAGCA
ACAAACTTCCATTTTTGTTATGAAGGAGACTTTACTTTGTGGGTATCTGA
TATTCAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAAT
CTCCATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGT
GATCATTTTGTCAATTCTATTCAACAATTCTGTCAAGATCTTTCAATACC
ATTTGTCAAATTGATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACG
CGAGAATTGTTGAGCAATTATTCAACCTCATCATTAATAACAACATTTTG
TTGAATGATCATCAAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTG
GATGGAACTCATTGATGTTTATTTGAATAAGCAGCACATTGAAATGATGC
ATCAGCCACTTTTTATTGCCTTGATGATAAAAACAACGGCGACTGATCAT
AAGCATGCAAGAAATTGCTGGCTCCTTGTTGGAAAGGAAGACTTTTTTGA
TCAGAAATCACTTCATTTTGCACACAATGCTTTTTCAATTGTTCAGAACC
TGGATTTCCATCTGGCTTATTCTGGCAATACAACCATTCAAATGTTAAGA
AATGAATTGAAGATTTACTTGACAGCAACAAACTTCCATTTTTGTTATGA
AGGAGACTTTACTTTGTGGGTATCTGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004044-exon-sc0000039-1491911889:554528..554659 | TCONS_00004044-exon-sc0000039-1491911889:554528..554659 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1510915933:554528..554659 | TCONS_00004044-exon-sc0000039-1510915933:554528..554659 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1575043694:554528..554659 | TCONS_00004044-exon-sc0000039-1575043694:554528..554659 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1491911889:555251..555517 | TCONS_00004044-exon-sc0000039-1491911889:555251..555517 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1510915933:555251..555517 | TCONS_00004044-exon-sc0000039-1510915933:555251..555517 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1575043694:555251..555517 | TCONS_00004044-exon-sc0000039-1575043694:555251..555517 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1491911889:555855..556083 | TCONS_00004044-exon-sc0000039-1491911889:555855..556083 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1510915933:555855..556083 | TCONS_00004044-exon-sc0000039-1510915933:555855..556083 | Clytia hemisphaerica | exon |
| TCONS_00004044-exon-sc0000039-1575043694:555855..556083 | TCONS_00004044-exon-sc0000039-1575043694:555855..556083 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:554528..556083 + |
Blast
The following BLAST results are available for this feature:
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