TCONS_00004035 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004035
Unique Name	TCONS_00004035
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2131

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000039:461096..463642+
coding sequence from alignment at sc0000039:461096..463642+

transcript sequence

>TCONS_00004035 ID=TCONS_00004035|Name=TCONS_00004035|organism=Clytia hemisphaerica|type=transcript|length=2131bp
AGCACGGCATGGAAGGTCATTTGTGACGGACAAAATATGAATATCAAAAA
GGGATTTATAAAAATTCACTACTCAAGAAAATTATTTACTCAGTTTACTT
CGAGCAGAAGAGACATAATTGGATTGAAATGAACTTCGTACACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCAATacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGtttgGTTTTGAAACAGCTGTCCCAGACTTTCACGCA
TGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatatttt
ccacTTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCTG
TCAAATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGGG
GATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTCC
AACAACGCCtacaacaacaaccactacGACCACAACAACTACAGAAGAAC
CCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGCCACC
ACAGAACAACCCGAGGCCACCACAGAACAACCCGAGGCCACCACAGAACA
ACCCGAAGTAACTACGGAAGAACCCGAGCAAGCCACGGAATCAACACCTA
CGACAACCACTCGAAGAAGACCTATCATTGCCGTCTTAGAGGATTTCGAA
GtgaattaaaagaaaaactgttttttattaTCGCTTATCTAGAAAACATG
GAAGTAAAGGACGATTTTTGTCACATATTGTCTTCTACCATTTCTCAAGC
AGACTTCAACAATTAAAGTTTGTCTTAGAAGTATGTGGAAACTTTACTTT
CTTAACAATTTCTCAGAATGCTTTAATAGTAAGCTATGCATCGTTGCAAA
GATATTTTAGAGGTGAAGAATCTAAAAGATTGTAACTTACTTTAGTACta
agtaaaaaaaagtaaagcGTCCACAAATACTTTTGATACGCGGATTTGGG
tttcatccgcgaaattaagtctcaaTGGAATGTTTTCAAACAAATATCCT
GTCAAATAAACTACTTTTtcaatgtttactggcatcaaagaagtgctAAT
AGCGCGTCTTtaaacaaccaacatgcatgatgtgatgatttgacagtaaa
agcaACGAActcgtgaaaatattgtctcccaatagtgccacccgcgaaaa
tCTATCCTATTAAAGTATGTATGTCAACACATTGCAAACAATTTGGTAAT
TTTAGATACCCCATTCTCACAAACCCTGCACAGACTCGGTAggatttttg
ttaaaaagaacGGACCAAAGCTCGATGGTTATTGATACTCCCATGTTTTA
TATGGCTGgagaattccattgtttttgagcaAGAAAATTCAGAGGGGAAG
GACGAAATAGCACAATATTATGCAGTGAGGATTTTCTTATCTGGTTATTT
TCAgcagggacaaaaattggagaaaaactTTCAGATaggaacgatatttt
ggccaatttttccagtagcAAGGGGGTCCCAGTGGAGTGGgtatgtgaga
agggggtgttttaagttttttttaaacctGCATTTCAGCAAGAAGTAAGT
GAAGATTATTCTCTTCTACCAAGAAAACATTAGCTTATAATTTTTAATGA
GAATTtactatggcgcgccaaagcggaaataaatactatctttcatttcg
cgacactatctttcatttcgcgacactatct

Run BLAST on NCBI

protein sequence of TCONS_00004035-protein

>TCONS_00004035-protein ID=TCONS_00004035-protein|Name=TCONS_00004035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MNFVHVFVLLVVFVNKIESKCDALTRSVNGQYNSKFILNLGDGFRSTDLT
IKFVDVVQNVDASHSKTPNAKSIIDGGKTFKITGGFSQRRIEVHVKGYNT
KLSSIEATGIDCNFEGKQCKSSDFGAAKCERMLRERTIEQGKIQSGIWFT
SGNDFRFGAKLTFGFETAVPDFHAWQGINRLYEKPQCQNIFHFQSQQGMV
AGVSRLSVKFHYSPPGKLVYIAFGDVECLQVCGTKPDCLLPTTPTTTTTT
TTTTTEEPKVTTEPEVTTEEPEATTEQPEATTEQPEATTEQPEVTTEEPE
QATESTPTTTTRRRPIIAVLEDFEVN

Run BLAST on NCBI

transcript from alignment at sc0000039:461096..463642+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004035 ID=TCONS_00004035|Name=TCONS_00004035|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at sc0000039:461096..463642+ (Clytia hemisphaerica)
AGCACGGCATGGAAGGTCATTTGTGACGGACAAAATATGAATATCAAAAA
GGGATTTATAAAAATTCACTACTCAAGAAAATTATTTACTCAGTTTACTT
CGAGCAGAAGAGACATAATTGGATTGAAATGAACTTCGTACACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCAATacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGGTAAGTTAGTGTAAAAAATCAACTAAAACCTCGCCA
GCATTGATATAACATCAATAGTTTCAAACGAAACCAAAATCcttattttc
acttttaatttttagtttgGTTTTGAAACAGCTGTCCCAGACTTTCACGC
ATGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatattt
tccacTTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCT
GTCAAATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGG
GGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTC
CAACAACGCCtacaacaacaaccactacGACCACAACAACTACAGAAGAA
CCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGTAAC
AACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGGCCACCACAGAAC
AACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAA
GTGATCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTAACAAC
GGAACAACCCGAAGTCACCACGGAAGAACCCGAAGTAACCACGGAACAAC
CCGAAGTAACAACGGAACAACCCGAAGTAACAACGGGAGAACCCGAAGTA
ACCACAGAACAACCTGAGGCCACCACAGAACAACCCGAGGCCACCACAGA
ACAACCCGAAGTAGCCACAGAACAACCCGAAGTAACCACGGAAAAACCCG
AAGTCACAACGGAAGAACCCGAGGTAACTACGGAAGAACCCGAGCAAGCC
ACGGAATCAACACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGT
CTTAGAGGATTTCGAAGtgaattaaaagaaaaactgttttttattaTCGC
TTATCTAGAAAACATGGAAGTAAAGGACGATTTTTGTCACATATTGTCTT
CTACCATTTCTCAAGCAGACTTCAACAATTAAAGTTTGTCTTAGAAGTAT
GTGGAAACTTTACTTTCTTAACAATTTCTCAGAATGCTTTAATAGTAAGC
TATGCATCGTTGCAAAGATATTTTAGAGGTGAAGAATCTAAAAGATTGTA
ACTTACTTTAGTACtaagtaaaaaaaagtaaagcGTCCACAAATACTTTT
GATACGCGGATTTGGGtttcatccgcgaaattaagtctcaaTGGAATGTT
TTCAAACAAATATCCTGTCAAATAAACTACTTTTtcaatgtttactggca
tcaaagaagtgctAATAGCGCGTCTTtaaacaaccaacatgcatgatgtg
atgatttgacagtaaaagcaACGAActcgtgaaaatattgtctcccaata
gtgccacccgcgaaaatCTATCCTATTAAAGTATGTATGTCAACACATTG
CAAACAATTTGGTAATTTTAGATACCCCATTCTCACAAACCCTGCACAGA
CTCGGTAggatttttgttaaaaagaacGGACCAAAGCTCGATGGTTATTG
ATACTCCCATGTTTTATATGGCTGgagaattccattgtttttgagcaAGA
AAATTCAGAGGGGAAGGACGAAATAGCACAATATTATGCAGTGAGGATTT
TCTTATCTGGTTATTTTCAgcagggacaaaaattggagaaaaactTTCAG
ATaggaacgatattttggccaatttttccagtagcAAGGGGGTCCCAGTG
GAGTGGgtatgtgagaagggggtgttttaagttttttttaaacctGCATT
TCAGCAAGAAGTAAGTGAAGATTATTCTCTTCTACCAAGAAAACATTAGC
TTATAATTTTTAATGAGAATTtactatggcgcgccaaagcggaaataaat
actatctttcatttcgcgacactatctttcatttcgcgacactatct

Coding sequence (CDS) from alignment at sc0000039:461096..463642+

>TCONS_00004035 ID=TCONS_00004035|Name=TCONS_00004035|organism=Clytia hemisphaerica|type=CDS|length=4905bp|location=Sequence derived from alignment at sc0000039:461096..463642+ (Clytia hemisphaerica)
ATGAACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAAT
CGAATCAAAATGTGACGCACTCACTCGATCAGTTAACGGTCAATacaatt
caaaattcattttaaatttgGGAGATGGATTTCGTTCAACAGATTTAACG
ATCAAGTTCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAAC
ACCGAACGCAAAGAGTATTATAGATGGAgggaaaactttcaaaataacaG
GTGGCTTCTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACT
AAACTTTCATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAA
ACAATGTAAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTC
GAGAAAGGACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACA
AGCGGAAATGATTTTCGCTTTGGTGCAAAATTGACGtttgGTTTTGAAAC
AGCTGTCCCAGACTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAA
AACCACaatgtcaaaatattttccacTTTCAATCACAACAAGGAATGGTT
GCTGGAGTATCTCGACTTTCTGTCAAATTTCACTACTCGCCACCTGGCAA
ATTAGTTTACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAA
CAAAACCAGACTGTCTTCTTCCAACAACGCCtacaacaacaaccactacG
ACCACAACAACTACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAAC
CACGGAAGAACCCGAAGCCACCACAGAACAACCCGAGGCCACCACAGAAC
AACCCGAGGCCACCACAGAACAACCCGAAGTAACTACGGAAGAACCCGAG
CAAGCCACGGAATCAACACCTACGACAACCACTCGAAGAAGACCTATCAT
TGCCGTCTTAGAGGATTTCGAAGtgaattaaATGAACTTCGTACACGTTT
TTGTTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCA
CTCACTCGATCAGTTAACGGTCAATacaattcaaaattcattttaaattt
gGGAGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTG
TACAGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATT
ATAGATGGAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAG
AATTGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAG
CAACAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGAC
TTTGGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCA
AGGAAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCT
TTGGTGCAAAATTGACGtttgGTTTTGAAACAGCTGTCCCAGACTTTCAC
GCATGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatat
tttccacTTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTT
CTGTCAAATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTT
GGGGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCT
TCCAACAACGCCtacaacaacaaccactacGACCACAACAACTACAGAAG
AACCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGCC
ACCACAGAACAACCCGAGGCCACCACAGAACAACCCGAGGCCACCACAGA
ACAACCCGAAGTAACTACGGAAGAACCCGAGCAAGCCACGGAATCAACAC
CTACGACAACCACTCGAAGAAGACCTATCATTGCCGTCTTAGAGGATTTC
GAAGtgaattaaATGAACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTT
CGTCAACAAAATCGAATCAAAATGTGACGCACTCACTCGATCAGTTAACG
GTCAATacaattcaaaattcattttaaatttgGGAGATGGATTTCGTTCA
ACAGATTTAACGATCAAGTTCGTTGACGTTGTACAGAATGTTGATGCTTC
GCATAGTAAAACACCGAACGCAAAGAGTATTATAGATGGAgggaaaactt
tcaaaataacaGGTGGCTTCTCACAAAGAAGAATTGAAGTTCACGTCAAG
GGTTACAACACTAAACTTTCATCAATCGAAGCAACAGGGATCGACTGCAA
CTTTGAAGGAAAACAATGTAAATCAAGTGACTTTGGTGCAGCAAAATGTG
AAAGAATGCTTCGAGAAAGGACTATTGAGCAAGGAAAGATTCAAAGTGGA
ATTTGGTTCACAAGCGGAAATGATTTTCGCTTTGGTGCAAAATTGACGtt
tgGTTTTGAAACAGCTGTCCCAGACTTTCACGCATGGCAAGGGATCAACA
GACTCTATGAAAAACCACaatgtcaaaatattttccacTTTCAATCACAA
CAAGGAATGGTTGCTGGAGTATCTCGACTTTCTGTCAAATTTCACTACTC
GCCACCTGGCAAATTAGTTTACATCGCTTTTGGGGATGTAGAATGTCTAC
AAGTGTGTGGAACAAAACCAGACTGTCTTCTTCCAACAACGCCtacaaca
acaaccactacGACCACAACAACTACAGAAGAACCCAAAGTAACCACAGA
ACCCGAAGTAACCACGGAAGAACCCGAAGCCACCACAGAACAACCCGAGG
CCACCACAGAACAACCCGAGGCCACCACAGAACAACCCGAAGTAACTACG
GAAGAACCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCGAAG
AAGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaaATGAACT
TCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCA
AAATGTGACGCACTCACTCGATCAGTTAACGGTCAATacaattcaaaatt
cattttaaatttgGGAGATGGATTTCGTTCAACAGATTTAACGATCAAGT
TCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAACACCGAAC
GCAAAGAGTATTATAGATGGAgggaaaactttcaaaataacaGGTGGCTT
CTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACTAAACTTT
CATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAAACAATGT
AAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAG
GACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAA
ATGATTTTCGCTTTGGTGCAAAATTGACGtttgGTTTTGAAACAGCTGTC
CCAGACTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAAAACCACa
atgtcaaaatattttccacTTTCAATCACAACAAGGAATGGTTGCTGGAG
TATCTCGACTTTCTGTCAAATTTCACTACTCGCCACCTGGCAAATTAGTT
TACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAACAAAACC
AGACTGTCTTCTTCCAACAACGCCtacaacaacaaccactacGACCACAA
CAACTACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAACCACGGAA
GAACCCGAAGCCACCACAGAACAACCCGAGGCCACCACAGAACAACCCGA
GGCCACCACAGAACAACCCGAAGTAACTACGGAAGAACCCGAGCAAGCCA
CGGAATCAACACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGTC
TTAGAGGATTTCGAAGtgaattaaATGAACTTCGTACACGTTTTTGTTCT
TTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTCACTC
GATCAGTTAACGGTCAATacaattcaaaattcattttaaatttgGGAGAT
GGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTACAGAA
TGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATAGATG
GAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAATTGAA
GTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAACAGG
GATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTTGGTG
CAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGGAAAG
ATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTGGTGC
AAAATTGACGtttgGTTTTGAAACAGCTGTCCCAGACTTTCACGCATGGC
AAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatattttccac
TTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCTGTCAA
ATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGGGGATG
TAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTCCAACA
ACGCCtacaacaacaaccactacGACCACAACAACTACAGAAGAACCCAA
AGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGCCACCACAG
AACAACCCGAGGCCACCACAGAACAACCCGAGGCCACCACAGAACAACCC
GAAGTAACTACGGAAGAACCCGAGCAAGCCACGGAATCAACACCTACGAC
AACCACTCGAAGAAGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtga
attaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002266	XLOC_002266	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004035-protein	TCONS_00004035-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:461096..463642 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0380458	0	0.0672479	0	0	0	0	0	0	0	0	0	0	0	0	0.075794	0.948755	1.21687	0	0	5.92313	5.70956	3.51627	3.35915	4.6121	10.2318	0	0	0.641544	0.45036

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00004035 vs. Swiss-Prot (Human)

BLAST of TCONS_00004035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00004035 (transcript) - C. hemisphaerica