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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004027 ID=TCONS_00004027|Name=TCONS_00004027|organism=Clytia hemisphaerica|type=transcript|length=1725bp
TCCGTATAGAAAACCATGGGTTTctgaatattcatgatattcattgatat
ccaaaaagttttttttattttcgaaagcCGCATAACGAAgatttatttac
aaaattggGTACAGTATATCTACaaaattctaaaagaaaaatataataca
CGATTCGCTAACTTTGAAACTTAACTTAAAATGTAGAAATATTGAATTGT
CCTCGTCAAAGATTATAATTTCGAAGAAATAGTTTGTAAAGAAATAGAGA
CAGTATTTTTGCGCGTCATTCGAAACAATGAGTTCCACTCTATAACACGC
TTCCCACAAAAGATGTGTTTTAGACAGGACCTGAACTTGCGATCCACAAT
GGAGTAGATCAACGGATTGACTGCCACATGCATGACAATGGGTAGACTAG
CGTATAACTTCCAATGGTGGAATGTCGACAGAGATGTGTTCTGGTTGATC
AGGTTTTCATCGATCAAAATCCATACCAGCCGATTTGGTAACACCAACAC
GAAGTAAGTTATCAAGACTAGTAACAGGATAACGATGATtcgtttgtttt
ctttttggcGCTGCTTTTGATGGAAATCATCAATATCAGTTGTTTTGGTG
GTGTGAAGCCGATAAATGATCTTCCCATACATAAAGATCAAACAAAACAT
TGGCAAAATGAACGAAAAGATAAGAGTGAACCATGAGTAAAACCTGGAAc
tttcttttgaccaattttcaaaacATCTTTTCGGGATTGAGTTGTATTCC
GATACAATGGAAATCGGGATAACGATACCGATTGAGATGATAATGTTTAT
AAAGATTGCgatgttgattttctttgacGATAATCCTCTTGAGAAAGGAT
ATATGATACCGATGAATCGTTCTAATGTGATAATCACGATGAAGCCGACT
CCGATCAGAGATGAGAGCGCGTTCACCGACGCCATGAATTTACATCCTAC
ATTCCCGTATATCCAGTCACAAACATTTTCCGCTCGGAGGTAAGGAGAAA
CATCGATGATTTGAATGATTGAAAAAACGAAATCAGCGATAGCCAGTCCT
CCAATTAGTTTGTGACATTTTGTGGAACGTTCCCAATTCACCATAGTAAC
AATCATAACAAACCCGTTGCCAATGAGCCCGACAAAGGAGCTGACAATAG
CTAAGATTGCTCTTAACCTCTCTGCATCTGGTTTGCAACGAATGATATAA
ACCGTCTTTTTAGATTCTCCACAGTACTGACTGACCAGTGGATTATTACA
AGTGCAGTTCTTAATATTCAAGAGTTTACAAACCTCCTCTACTGTTGCTC
CGTCGGGGACCGTAACGGTTTCGTTTTGCGGAGGAAGCGTTCCGCACAGT
CCTGGGAGTTTCTCACAAGTACACATATCCAAAGGTATTGAACTGTCCTT
GCAAATCTGTTTGATGTCTAATCCGTGAGATGGTTTCGGTGCTCCGGTTG
AGGGATTGGAAGTAACGTTTTGAGCCAAACATAATTGGCATACAAGTAGA
ACCACAAGCAAGATTCCTTCCTTCATTTTTGATCTCAGGATCGTTCTTTC
TTACTACTGTTTAAATTCTGAAATGACACAggagaaaagaaaaatcaaac
aaatatcTACTCCATTGTATTGATTCAcgaaaattctttaaatttaaaaG
CTGAAATCATCATAAATCTCGAATTTCATTCAAACAGATCAAAGTGCTTG
CATTACTTTTTGTGTTGTCGATGAT Run BLAST on NCBI transcript from alignment at sc0000039:368925..370711+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004027 ID=TCONS_00004027|Name=TCONS_00004027|organism=Clytia hemisphaerica|type=transcript|length=1787bp|location=Sequence derived from alignment at sc0000039:368925..370711+ (Clytia hemisphaerica)
TCCGTATAGAAAACCATGGGTTTctgaatattcatgatattcattgatat
ccaaaaagttttttttattttcgaaagcCGCATAACGAAgatttatttac
aaaattggGTACAGTATATCTACaaaattctaaaagaaaaatataataca
CGATTCGCTAACTTTGAAACTTAACTTAAAATGTAGAAATATTGAATTGT
CCTCGTCAAAGATTATAATTTCGAAGAAATAGTTTGTAAAGAAATAGAGA
CAGTATTTTTGCGCGTCATTCGAAACAATGAGTTCCACTCTATAACACGC
TTCCCACAAAAGATGTGTTTTAGACAGGACCTGAACTTGCGATCCACAAT
GGAGTAGATCAACGGATTGACTGCCACATGCATGACAATGGGTAGACTAG
CGTATAACTTCCAATGGTGGAATGTCGACAGAGATGTGTTCTGGTTGATC
AGGTTTTCATCGATCAAAATCCATACCAGCCGATTTGGTAACACCAACAC
GAAGTAAGTTATCAAGACTAGTAACAGGATAACGATGATtcgtttgtttt
ctttttggcGCTGCTTTTGATGGAAATCATCAATATCAGTTGTTTTGGTG
GTGTGAAGCCGATAAATGATCTTCCCATACATAAAGATCAAACAAAACAT
TGGCAAAATGAACGAAAAGATAAGAGTGAACCATGAGTAAAACCTGGAAc
tttcttttgaccaattttcaaaacatctttTCGGGATTGGGTTGTATTCC
GATACAATGGAAATCGGGATAACGATANCTCAAAACATCTTTTCGGGATT
GAGTTGTATTCCGATACAATGGAAATCGGGATAACGATACCGATTGAGAT
GATAATGTTTATAAAGATTGCgatgttgattttctttgacGATAATCCTC
TTGAGAAAGGATATATGATACCGATGAATCGTTCTAATGTGATAATCACG
ATGAAGCCGACTCCGATCAGAGATGAGAGCGCGTTCACCGACGCCATGAA
TTTACATCCTACATTCCCGTATATCCAGTCACAAACATTTTCCGCTCGGA
GGTAAGGAGAAACATCGATGATTTGAATGATTGAAAAAACGAAATCAGCG
ATAGCCAGTCCTCCAATTAGTTTGTGACATTTTGTGGAACGTTCCCAATT
CACCATAGTAACAATCATAACAAACCCGTTGCCAATGAGCCCGACAAAGG
AGCTGACAATAGCTAAGATTGCTCTTAACCTCTCTGCATCTGGTTTGCAA
CGAATGATATAAACCGTCTTTTTAGATTCTCCACAGTACTGACTGACCAG
TGGATTATTACAAGTGCAGTTCTTAATATTCAAGAGTTTACAAACCTCCT
CTACTGTTGCTCCGTCGGGGACCGTAACGGTTTCGTTTTGCGGAGGAAGC
GTTCCGCACAGTCCTGGGAGTTTCTCACAAGTACACATATCCAAAGGTAT
TGAACTGTCCTTGCAAATCTGTTTGATGTCTAATCCGTGAGATGGTTTCG
GTGCTCCGGTTGAGGGATTGGAAGTAACGTTTTGAGCCAAACATAATTGG
CATACAAGTAGAACCACAAGCAAGATTCCTTCCTTCATTTTTGATCTCAG
GATCGTTCTTTCTTACTACTGTTTAAATTCTGAAATGACACAggagaaaa
gaaaaatcaaacaaatatcTACTCCATTGTATTGATTCAcgaaaattctt
taaatttaaaaGCTGAAATCATCATAAATCTCGAATTTCATTCAAACAGA
TCAAAGTGCTTGCATTACTTTTTGTGTTGTCGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004027-exon-sc0000039-1491911889:368925..369648 | TCONS_00004027-exon-sc0000039-1491911889:368925..369648 | Clytia hemisphaerica | exon |
| TCONS_00004027-exon-sc0000039-1510915933:368925..369648 | TCONS_00004027-exon-sc0000039-1510915933:368925..369648 | Clytia hemisphaerica | exon |
| TCONS_00004027-exon-sc0000039-1575043694:368925..369648 | TCONS_00004027-exon-sc0000039-1575043694:368925..369648 | Clytia hemisphaerica | exon |
| TCONS_00004027-exon-sc0000039-1491911889:369711..370711 | TCONS_00004027-exon-sc0000039-1491911889:369711..370711 | Clytia hemisphaerica | exon |
| TCONS_00004027-exon-sc0000039-1510915933:369711..370711 | TCONS_00004027-exon-sc0000039-1510915933:369711..370711 | Clytia hemisphaerica | exon |
| TCONS_00004027-exon-sc0000039-1575043694:369711..370711 | TCONS_00004027-exon-sc0000039-1575043694:369711..370711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:368925..370711 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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