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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004026 ID=TCONS_00004026|Name=TCONS_00004026|organism=Clytia hemisphaerica|type=transcript|length=1528bp
TNGCTGATGTTATTATAacagcaaaatgtttttgttcCTTTTGGTTGTCA
ACGTTTTGCAATTTTGTGGTTGTGAACTTCTGGAACCGAAGAACGTGAAA
CGGAAAGTTAACCTTAAAGATATCTCGAAGCTTGTGCCACTCAATTTTGT
AGCAGACACAGCTGGTATCGGAGATTTTGACCCTGAGAAAAATGGACTTC
TTATACACGAAtattttgatcaattatatAAGAAATATCCACAGTATAAG
AAATTCTCTGAACTTCAAGATGAACAGATTTTAATGGTGGATCCTTTTAA
AGACAAAAATAACCCGTATGCTGACGCTGTGAAAAAGTTTAAATGGGTTT
TAGAATCCATATATCAAGACAATGGAGGTAAACTGGAttctgaaaaatcg
gggaaCAATGACGCCCGATTTCAATTAGATTCTGCAGAGGTTGCAGAATA
TGAGCGTCCAACTGTACCTCCCTTATCAGAAATTCAAACACCAGCAGATG
TTGATGATTCAGATAATTTGTATGATGGAGATAATATACAATTGGATATC
GATGGAGATGATGATGGGGATAATTTAAATGAATTTAAGTAGTGAATGAC
ACACAATTTTGTATATAATTTTTCTAGTTTCTTTAAAAGAAAGCTGTCAC
TAGCTATTGAATTTCCCAAACGTTATTAGTGTGCTCACATTTCGTAGGAG
TGAAGGTATTTAGGACACATTAAAGGTGCGAATCTAAAAAGTAGACGCTA
GCGTTCCAAACCATTTATAAGCAATCTTATAGGCGTTGGTGGTTTAAGCC
CAAACAATTTGCTTCTTGAAACAATTTTAATAAGTTGTAATAAAATGTTA
AATGTTATGATTTGTGAATTGATAATTTTATTAAGTTCGAAGTATTATGG
TGTCatcatttttcttaaaataactcCAAAACCACCAAAATGTATAAACT
TCTGACATTAAAATGAGAAGGAAGTCCCTATTCCTTTGATTCATTTGCAT
TCATTAAGAAAATTTGTGTCGTCATCATGACGTTTCGCGTGTCACAAATT
AACACCTCCCCTTAGCCCTTTGTCGAGAAGCAAACTCACTCCAGGTTCAA
ACttctacattttttataagcaatcagtTGGCTAAGGCTCCAAGACTCAA
ACTTGccaatttatttttcatctcgtaaagtaaaagtttttttgataatC
TAACCATAGCAAGggatagcccttgacccaataacttaaatatataaata
ttgtataatatcaggggtggtcaaagtAAACTTtccagaaaatgagctag
aatacTATGCAACTCCAGGGCTGACCCGAAAATTGcaattgcttataaaa
aaatatgtaccaATGAATGCAATGCAGAATTTTAGGATTTTCAAGAGTTA
ACAATCTTGTACTGTTTCGCCACTTAAAATGAAATGTTCTTGTTGTCTTT
TAGACTTTTCCGTTTATTACTTAGCTCTAGTTCAGACAAATTACTTTCTG
TTCTCTCAATTCCAATTTTCAAAGCAGA Run BLAST on NCBI protein sequence of TCONS_00004026-protein >TCONS_00004026-protein ID=TCONS_00004026-protein|Name=TCONS_00004026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MFLFLLVVNVLQFCGCELLEPKNVKRKVNLKDISKLVPLNFVADTAGIGD
FDPEKNGLLIHEYFDQLYKKYPQYKKFSELQDEQILMVDPFKDKNNPYAD
AVKKFKWVLESIYQDNGGKLDSEKSGNNDARFQLDSAEVAEYERPTVPPL
SEIQTPADVDDSDNLYDGDNIQLDIDGDDDGDNLNEFK Run BLAST on NCBI transcript from alignment at sc0000039:325894..328126+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004026 ID=TCONS_00004026|Name=TCONS_00004026|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at sc0000039:325894..328126+ (Clytia hemisphaerica)
TNGCTGATGTTATTATAacagcaaaatgtttttgttcCTTTTGGTTGTCA
ACGTTTTGCAATTTTGTGGTTGTGAACTTCTGGAACCGAAGAACGTGAAA
CGGAAAGTTAACCTTAAAGGTGAGAGTTTCTTCTTTTACTCaacttttga
aattcttttcgaTATTCGTCTCAGAGAATTTAAATGATATACTTTTGTGG
TTTGTTTTCCTCTTTAACCTCAATCTCATCATAAATCTCATTTTTAATGA
GAGCTTGATTTAAATCAGTCAAGTCACCAGAAGTCACTATTTTTATAACG
TTCTTTCTTTGACCAGAATTAAGCTACTTAAATTAGACATCTGTTCTGAC
TACTTTTAAAGCCTTCCCCATATTGAATATCCAAAAATCCAGCAATACTG
AAGTGTTTTTACTATGTATCgtgcatacacgctttttttataagaataca
ctttataagaatgtccatgatgaaaatggccaaaaaatgaagaatatgct
cagaatatcaccatcatagaattttgctactcaagctaagaatgccattt
tagaccattttttagtcaattaggatcctaacctaagaatgctgtaagaa
tattctaggatgattttcccaaaaaagttaagaataaccatgatgaaatg
gatttacaccattcttataaaaaaaaagcgtgtagtattGTTGACAAGCC
GATAGTTTCGTAATTTGTTTTATCTTGTCTCACTGCACCGCCCCTTGAAA
GATGAGACGACGTATTTTGTTAAAACGATGATAACGTTAAGTGACACTAT
TTATTGTATTGTTCTCTTTTCCAGATATCTCGAAGCTTGTGCCACTCAAT
TTTGTAGCAGACACAGCTGGTATCGGAGATTTTGACCCTGAGAAAAATGG
ACTTCTTATACACGAAtattttgatcaattatatAAGAAATATCCACAGT
ATAAGAAATTCTCTGAACTTCAAGATGAACAGATTTTAATGGTGGATCCT
TTTAAAGACAAAAATAACCCGTATGCTGACGCTGTGAAAAAGTTTAAATG
GGTTTTAGAATCCATATATCAAGACAATGGAGGTAAACTGGAttctgaaa
aatcggggaaCAATGACGCCCGATTTCAATTAGATTCTGCAGAGGTTGCA
GAATATGAGCGTCCAACTGTACCTCCCTTATCAGAAATTCAAACACCAGC
AGATGTTGATGATTCAGATAATTTGTATGATGGAGATAATATACAATTGG
ATATCGATGGAGATGATGATGGGGATAATTTAAATGAATTTAAGTAGTGA
ATGACACACAATTTTGTATATAATTTTTCTAGTTTCTTTAAAAGAAAGCT
GTCACTAGCTATTGAATTTCCCAAACGTTATTAGTGTGCTCACATTTCGT
AGGAGTGAAGGTATTTAGGACACATTAAAGGTGCGAATCTAAAAAGTAGA
CGCTAGCGTTCCAAACCATTTATAAGCAATCTTATAGGCGTTGGTGGTTT
AAGCCCAAACAATTTGCTTCTTGAAACAATTTTAATAAGTTGTAATAAAA
TGTTAAATGTTATGATTTGTGAATTGATAATTTTATTAAGTTCGAAGTAT
TATGGTGTCatcatttttcttaaaataactcCAAAACCACCAAAATGTAT
AAACTTCTGACATTAAAATGAGAAGGAAGTCCCTATTCCTTTGATTCATT
TGCATTCATTAAGAAAATTTGTGTCGTCATCATGACGTTTCGCGTGTCAC
AAATTAACACCTCCCCTTAGCCCTTTGTCGAGAAGCAAACTCACTCCAGG
TTCAAACttctacattttttataagcaatcagtTGGCTAAGGCTCCAAGA
CTCAAACTTGccaatttatttttcatctcgtaaagtaaaagtttttttga
taatCTAACCATAGCAAGggatagcccttgacccaataacttaaatatat
aaatattgtataatatcaggggtggtcaaagtAAACTTtccagaaaatga
gctagaatacTATGCAACTCCAGGGCTGACCCGAAAATTGcaattgctta
taaaaaaatatgtaccaATGAATGCAATGCAGAATTTTAGGATTTTCAAG
AGTTAACAATCTTGTACTGTTTCGCCACTTAAAATGAAATGTTCTTGTTG
TCTTTTAGACTTTTCCGTTTATTACTTAGCTCTAGTTCAGACAAATTACT
TTCTGTTCTCTCAATTCCAATTTTCAAAGCAGA Coding sequence (CDS) from alignment at sc0000039:325894..328126+ >TCONS_00004026 ID=TCONS_00004026|Name=TCONS_00004026|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000039:325894..328126+ (Clytia hemisphaerica)
atgtttttgttcCTTTTGGTTGTCAACGTTTTGCAATTTTGTGGTTGTGA
ACTTCTGGAACCGAAGAACGTGAAACGGAAAGTTAACCTTAAAGATATCT
CGAAGCTTGTGCCACTCAATTTTGTAGCAGACACAGCTGGTATCGGAGAT
TTTGACCCTGAGAAAAATGGACTTCTTATACACGAAtattttgatcaatt
atatAAGAAATATCCACAGTATAAGAAATTCTCTGAACTTCAAGATGAAC
AGATTTTAATGGTGGATCCTTTTAAAGACAAAAATAACCCGTATGCTGAC
GCTGTGAAAAAGTTTAAATGGGTTTTAGAATCCATATATCAAGACAATGG
AGGTAAACTGGAttctgaaaaatcggggaaCAATGACGCCCGATTTCAAT
TAGATTCTGCAGAGGTTGCAGAATATGAGCGTCCAACTGTACCTCCCTTA
TCAGAAATTCAAACACCAGCAGATGTTGATGATTCAGATAATTTGTATGA
TGGAGATAATATACAATTGGATATCGATGGAGATGATGATGGGGATAATT
TAAATGAATTTAAGTAGatgtttttgttcCTTTTGGTTGTCAACGTTTTG
CAATTTTGTGGTTGTGAACTTCTGGAACCGAAGAACGTGAAACGGAAAGT
TAACCTTAAAGATATCTCGAAGCTTGTGCCACTCAATTTTGTAGCAGACA
CAGCTGGTATCGGAGATTTTGACCCTGAGAAAAATGGACTTCTTATACAC
GAAtattttgatcaattatatAAGAAATATCCACAGTATAAGAAATTCTC
TGAACTTCAAGATGAACAGATTTTAATGGTGGATCCTTTTAAAGACAAAA
ATAACCCGTATGCTGACGCTGTGAAAAAGTTTAAATGGGTTTTAGAATCC
ATATATCAAGACAATGGAGGTAAACTGGAttctgaaaaatcggggaaCAA
TGACGCCCGATTTCAATTAGATTCTGCAGAGGTTGCAGAATATGAGCGTC
CAACTGTACCTCCCTTATCAGAAATTCAAACACCAGCAGATGTTGATGAT
TCAGATAATTTGTATGATGGAGATAATATACAATTGGATATCGATGGAGA
TGATGATGGGGATAATTTAAATGAATTTAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004026-exon-sc0000039-1491911889:325894..326012 | TCONS_00004026-exon-sc0000039-1491911889:325894..326012 | Clytia hemisphaerica | exon |
| TCONS_00004026-exon-sc0000039-1510915933:325894..326012 | TCONS_00004026-exon-sc0000039-1510915933:325894..326012 | Clytia hemisphaerica | exon |
| TCONS_00004026-exon-sc0000039-1575043694:325894..326012 | TCONS_00004026-exon-sc0000039-1575043694:325894..326012 | Clytia hemisphaerica | exon |
| TCONS_00004026-exon-sc0000039-1491911889:326718..328126 | TCONS_00004026-exon-sc0000039-1491911889:326718..328126 | Clytia hemisphaerica | exon |
| TCONS_00004026-exon-sc0000039-1510915933:326718..328126 | TCONS_00004026-exon-sc0000039-1510915933:326718..328126 | Clytia hemisphaerica | exon |
| TCONS_00004026-exon-sc0000039-1575043694:326718..328126 | TCONS_00004026-exon-sc0000039-1575043694:326718..328126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:325894..328126 + |
Blast
The following BLAST results are available for this feature:
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