TCONS_00004000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004000
Unique NameTCONS_00004000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004000 ID=TCONS_00004000|Name=TCONS_00004000|organism=Clytia hemisphaerica|type=transcript|length=438bp
ctaaaacggttttccttttAGAAAGTGTCTCTTCGTACATTTTGATTGCT
TGATTATAGTCGCCATTCTCCGTGTACGCGTTTGCCAAATTATTCATGGA
CGCTAAAGTTTTGATATGGTGGACTcctaaaacggttttccttttAGAAA
GTGTCTCTTCGTGCATTTTGATTGCTTGATTATAGTCTCCTTTCTCCTGG
TACGTGTTTGCCAAATTATTCATGGACGCTAAAGTATCGATATGATCAAC
TcctaaaacggttttccttttAGAAAGAGTCTCTTCGTGTAATTTGATTG
CTTGATTATAGTCTCCTTTCTCCTGGTACGCGTTTGCCAAATTATTCATG
GACGCTAAAGTTTTGATATGGTGGACTCCTAAAACGGTTATCCTTTTAGA
AAGAGTCTCTTCGTGTATTTTGATTGCTTGATTATAGT
Run BLAST on NCBI

protein sequence of TCONS_00004000-protein

>TCONS_00004000-protein ID=TCONS_00004000-protein|Name=TCONS_00004000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
YNQAIKIHEETLSKRITVLGVHHIKTLASMNNLANAYQEKGDYNQAIKLH
EETLSKRKTVLGVDHIDTLASMNNLANTYQEKGDYNQAIKMHEETLSKRK
TVLGVHHIKTLASMNNLANAYTENGDYNQAIKMYEETLSKRKTVL
Run BLAST on NCBI

transcript from alignment at sc0000038:669945..670382

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004000 ID=TCONS_00004000|Name=TCONS_00004000|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at sc0000038:669945..670382 (Clytia hemisphaerica)
ACTATAATCAAGCAATCAAAATACACGAAGAGACTCTTTCTAAAAGGATA
ACCGTTTTAGGAGTCCACCATATCAAAACTTTAGCGTCCATGAATAATTT
GGCAAACGCGTACCAGGAGAAAGGAGACTATAATCAAGCAATCAAATTAC
ACGAAGAGACTCTTTCTaaaaggaaaaccgttttaggAGTTGATCATATC
GATACTTTAGCGTCCATGAATAATTTGGCAAACACGTACCAGGAGAAAGG
AGACTATAATCAAGCAATCAAAATGCACGAAGAGACACTTTCTaaaagga
aaaccgttttaggAGTCCACCATATCAAAACTTTAGCGTCCATGAATAAT
TTGGCAAACGCGTACACGGAGAATGGCGACTATAATCAAGCAATCAAAAT
GTACGAAGAGACACTTTCTaaaaggaaaaccgttttag

Coding sequence (CDS) from alignment at sc0000038:669945..670382

>TCONS_00004000 ID=TCONS_00004000|Name=TCONS_00004000|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0000038:669945..670382 (Clytia hemisphaerica)
TATAATCAAGCAATCAAAATACACGAAGAGACTCTTTCTAAAAGGATAAC
CGTTTTAGGAGTCCACCATATCAAAACTTTAGCGTCCATGAATAATTTGG
CAAACGCGTACCAGGAGAAAGGAGACTATAATCAAGCAATCAAATTACAC
GAAGAGACTCTTTCTaaaaggaaaaccgttttaggAGTTGATCATATCGA
TACTTTAGCGTCCATGAATAATTTGGCAAACACGTACCAGGAGAAAGGAG
ACTATAATCAAGCAATCAAAATGCACGAAGAGACACTTTCTaaaaggaaa
accgttttaggAGTCCACCATATCAAAACTTTAGCGTCCATGAATAATTT
GGCAAACGCGTACACGGAGAATGGCGACTATAATCAAGCAATCAAAATGT
ACGAAGAGACACTTTCTaaaaggaaaaccgtttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002249XLOC_002249Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004000-proteinTCONS_00004000-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004000-exon-sc0000038-1491911889:669945..670382TCONS_00004000-exon-sc0000038-1491911889:669945..670382Clytia hemisphaericaexon
TCONS_00004000-exon-sc0000038-1510915933:669945..670382TCONS_00004000-exon-sc0000038-1510915933:669945..670382Clytia hemisphaericaexon
TCONS_00004000-exon-sc0000038-1575043694:669945..670382TCONS_00004000-exon-sc0000038-1575043694:669945..670382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:669945..670382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.78864	0.906456	2.28038	0.514845	3.76064	2.80661	3.9836	3.35646	3.13325	3.71932	3.61007	3.71444	10.8187	9.63031	6.15799	9.15745	3.95425	5.48344	18.7745	18.7845	4.19412	3.06862	2.30924	4.68335	5.82175	3.71127	1.91189	1.81371	6.0184	2.80311
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002151Kinesin_light
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005871kinesin complex
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005871 kinesin complex
molecular_function GO:0003777 microtubule motor activity
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00004000 vs. Swiss-Prot (Human)
Match: KLC3 (Kinesin light chain 3 OS=Homo sapiens GN=KLC3 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.811e-18
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = -3 
Query:   17 YNQAIKIHEETLSKRITVLGVHHIKTLASMNNLANAYQEKGDYNQAIKLHEETLSKRKTVLGVDHIDTLASMNNLANTYQEKGDYNQAIKMHEETLSKRKTVLGVHHIKTLASMNNLANAYTENGDYNQAIKMYEETLSK 436
            Y +A  +  + L  R   LG  H    A++NNLA  Y ++G Y +A  L +  L  R+ VLG DH D    +NNLA   Q +G +    + +   LS  + + G H      + NNLA+AY +   Y QA ++Y+E L K
Sbjct:  265 YKEATDLLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHK 404
The following BLAST results are available for this feature:
BLAST of TCONS_00004000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC35.811e-1834.29Kinesin light chain 3 OS=Homo sapiens GN=KLC3 PE=1... [more]
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