TCONS_00004000-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004000-protein
Unique NameTCONS_00004000-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length145

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004000-protein ID=TCONS_00004000-protein|Name=TCONS_00004000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
YNQAIKIHEETLSKRITVLGVHHIKTLASMNNLANAYQEKGDYNQAIKLH
EETLSKRKTVLGVDHIDTLASMNNLANTYQEKGDYNQAIKMHEETLSKRK
TVLGVHHIKTLASMNNLANAYTENGDYNQAIKMYEETLSKRKTVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002249XLOC_002249Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004000TCONS_00004000Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002151Kinesin_light
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005871kinesin complex
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005871 kinesin complex
molecular_function GO:0003777 microtubule motor activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002151Kinesin light chainPRINTSPR00381KINESINLIGHTcoord: 102..123
score: 30.45
coord: 23..40
score: 38.89
coord: 67..87
score: 35.71
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 27..60
e-value: 0.18
score: 20.9
coord: 69..102
e-value: 0.41
score: 19.7
coord: 111..144
e-value: 0.02
score: 24.1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 27..60
score: 7.405
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 69..102
score: 7.287
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 111..144
score: 8.762
NoneNo IPR availableGENE3D1.20.5.1140coord: 48..70
e-value: 1.9E-5
score: 24.1
NoneNo IPR availableGENE3D3.30.70.100coord: 71..99
e-value: 3.3E-8
score: 33.3
NoneNo IPR availablePFAMPF13374TPR_10coord: 26..67
e-value: 1.2E-13
score: 50.3
NoneNo IPR availablePFAMPF13424TPR_12coord: 68..139
e-value: 4.0E-18
score: 65.4
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 1..47
e-value: 6.2E-14
score: 51.6
coord: 100..145
e-value: 3.5E-15
score: 55.6
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 27..144
score: 15.694
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 24..139

Blast
[Close]
BLAST of TCONS_00004000-protein vs. Swiss-Prot (Human)
Match: KLC3 (Kinesin light chain 3 OS=Homo sapiens GN=KLC3 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.725e-18
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 0 
Query:    1 YNQAIKIHEETLSKRITVLGVHHIKTLASMNNLANAYQEKGDYNQAIKLHEETLSKRKTVLGVDHIDTLASMNNLANTYQEKGDYNQAIKMHEETLSKRKTVLGVHHIKTLASMNNLANAYTENGDYNQAIKMYEETLSK 140
            Y +A  +  + L  R   LG  H    A++NNLA  Y ++G Y +A  L +  L  R+ VLG DH D    +NNLA   Q +G +    + +   LS  + + G H      + NNLA+AY +   Y QA ++Y+E L K
Sbjct:  265 YKEATDLLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHK 404
The following BLAST results are available for this feature:
BLAST of TCONS_00004000-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC31.725e-1834.29Kinesin light chain 3 OS=Homo sapiens GN=KLC3 PE=1... [more]
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