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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003996 ID=TCONS_00003996|Name=TCONS_00003996|organism=Clytia hemisphaerica|type=transcript|length=1382bp
ACGACGCCACGCACTGGGTGCAATCAGAATGCATCTAGGACAAGAGTGGG
ATTCAACGGGAGAGAAGACTCATGACGCAAGGACTGACTCTGTTGACCAA
GAATCACGGGAAGAGATGTACGAGAATATCCAATATCGAATCCAAATCGC
CAAGCAAAGTATCAGCGAGTTGTCTAATGGCCAAAGACAATACGCCAATA
CCTTGAAGGATATCACCCGAACATTGGAACAGAAGATTGAACAAGGTCAC
GGACAACCAGAAGAGCCAGGAACACCTTCGATCCCATCGATTGAATCCCT
ACAACACAAAGGATCACAACAAGAAGAAGCCCTATCCAAAGAAGTCAACA
GGATCCTTCAAGAACTAAAGAACTTACAAGAAGAAGTGCAATTTGATAGC
ACACCCCCGTCCCTAAAATTGAGAGACGAGCTTGAAGAAGCTTTCGAATC
TCTTAAGAAGTCCCACCAAATCTTAGAACGATTCGTTGAAAAAACCAAca
aaaaccatgaaaatctCCTAGAAAGATTACGACTGGAAACAAATGACCCA
GTCAATCGTGGAGAACCCTTCTCGTCCAAAACCCCATTCCCTATTGACAT
TTCTACCCCTGCTATTCGCGGGCTTAGAAGTGACAGTCAAAAACCCAACC
CTAATAACACAATGAAAATTGTGAAAGAGTCGAATCCAATGTCAGACACA
GTTTTACTTACCTCCCTACTTGCCAATAGAGTGGACATTGCTTCCCTCCC
AAAATTTGGTGCCCAATCAGATGAAGACATAGTTGAGTTTTTGACCAAAC
TTGATTTGTCATTGTCATTTTACCAATTAAACGATCAGCAGAAAGCAAGA
GTAATACCTCTATTATTAAAGAATAGAGCGTACACGTTCTTTTTGACCCT
AACTAATAACTCGAAAGAAGACTATAAGAAGTTATCTGATTGTCTTCGAA
AAGAATTTGACGCTCCAGGATTGAAATATCGGAAACGCCAAGAGCTACAC
GGCATTCAACAAAAAGGCGAAAGCATtacaaaatacttagaaaaaGTGGA
AAAGCTCTCACATAATCTGGAAGTGGCGGACCAAACCAAACTAGATATTA
TGATTGCTGGCTTAGACTTACCCTATAGGAATTATATACAGATGAAACAA
CCCAAGTCCTACAGCGATGCAACCCATGCCCTTTTGTTAAAGGAATCAAT
TAGTCCCCCAAGGGATGACGCAGCCACCATGCAGAGCATCCTCGCCGCTG
TGGAAGCCATGGGGCccaaaaatgatgaaaacaaaATTAGGAAGCCACTC
ACCTGCTTTCGCTGCGGGAAGCCAGGTCATATAGCCAGAGTCTGTTATTC
AAAACAGCAAAGGCAACCTCGCCAGTCATATN Run BLAST on NCBI protein sequence of TCONS_00003996-protein >TCONS_00003996-protein ID=TCONS_00003996-protein|Name=TCONS_00003996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
RRHALGAIRMHLGQEWDSTGEKTHDARTDSVDQESREEMYENIQYRIQIA
KQSISELSNGQRQYANTLKDITRTLEQKIEQGHGQPEEPGTPSIPSIESL
QHKGSQQEEALSKEVNRILQELKNLQEEVQFDSTPPSLKLRDELEEAFES
LKKSHQILERFVEKTNKNHENLLERLRLETNDPVNRGEPFSSKTPFPIDI
STPAIRGLRSDSQKPNPNNTMKIVKESNPMSDTVLLTSLLANRVDIASLP
KFGAQSDEDIVEFLTKLDLSLSFYQLNDQQKARVIPLLLKNRAYTFFLTL
TNNSKEDYKKLSDCLRKEFDAPGLKYRKRQELHGIQQKGESITKYLEKVE
KLSHNLEVADQTKLDIMIAGLDLPYRNYIQMKQPKSYSDATHALLLKESI
SPPRDDAATMQSILAAVEAMGPKNDENKIRKPLTCFRCGKPGHIARVCYS
KQQRQPRQSY Run BLAST on NCBI transcript from alignment at sc0000038:516662..518043 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003996 ID=TCONS_00003996|Name=TCONS_00003996|organism=Clytia hemisphaerica|type=transcript|length=1382bp|location=Sequence derived from alignment at sc0000038:516662..518043 (Clytia hemisphaerica)
NATATGACTGGCGAGGTTGCCTTTGCTGTTTTGAATAACAGACTCTGGCT
ATATGACCTGGCTTCCCGCAGCGAAAGCAGGTGAGTGGCTTCCTAATttt
gttttcatcatttttggGCCCCATGGCTTCCACAGCGGCGAGGATGCTCT
GCATGGTGGCTGCGTCATCCCTTGGGGGACTAATTGATTCCTTTAACAAA
AGGGCATGGGTTGCATCGCTGTAGGACTTGGGTTGTTTCATCTGTATATA
ATTCCTATAGGGTAAGTCTAAGCCAGCAATCATAATATCTAGTTTGGTTT
GGTCCGCCACTTCCAGATTATGTGAGAGCTTTTCCACtttttctaagtat
tttgtaATGCTTTCGCCTTTTTGTTGAATGCCGTGTAGCTCTTGGCGTTT
CCGATATTTCAATCCTGGAGCGTCAAATTCTTTTCGAAGACAATCAGATA
ACTTCTTATAGTCTTCTTTCGAGTTATTAGTTAGGGTCAAAAAGAACGTG
TACGCTCTATTCTTTAATAATAGAGGTATTACTCTTGCTTTCTGCTGATC
GTTTAATTGGTAAAATGACAATGACAAATCAAGTTTGGTCAAAAACTCAA
CTATGTCTTCATCTGATTGGGCACCAAATTTTGGGAGGGAAGCAATGTCC
ACTCTATTGGCAAGTAGGGAGGTAAGTAAAACTGTGTCTGACATTGGATT
CGACTCTTTCACAATTTTCATTGTGTTATTAGGGTTGGGTTTTTGACTGT
CACTTCTAAGCCCGCGAATAGCAGGGGTAGAAATGTCAATAGGGAATGGG
GTTTTGGACGAGAAGGGTTCTCCACGATTGACTGGGTCATTTGTTTCCAG
TCGTAATCTTTCTAGGagattttcatggtttttgTTGGTTTTTTCAACGA
ATCGTTCTAAGATTTGGTGGGACTTCTTAAGAGATTCGAAAGCTTCTTCA
AGCTCGTCTCTCAATTTTAGGGACGGGGGTGTGCTATCAAATTGCACTTC
TTCTTGTAAGTTCTTTAGTTCTTGAAGGATCCTGTTGACTTCTTTGGATA
GGGCTTCTTCTTGTTGTGATCCTTTGTGTTGTAGGGATTCAATCGATGGG
ATCGAAGGTGTTCCTGGCTCTTCTGGTTGTCCGTGACCTTGTTCAATCTT
CTGTTCCAATGTTCGGGTGATATCCTTCAAGGTATTGGCGTATTGTCTTT
GGCCATTAGACAACTCGCTGATACTTTGCTTGGCGATTTGGATTCGATAT
TGGATATTCTCGTACATCTCTTCCCGTGATTCTTGGTCAACAGAGTCAGT
CCTTGCGTCATGAGTCTTCTCTCCCGTTGAATCCCACTCTTGTCCTAGAT
GCATTCTGATTGCACCCAGTGCGTGGCGTCGT Coding sequence (CDS) from alignment at sc0000038:516662..518043 >TCONS_00003996 ID=TCONS_00003996|Name=TCONS_00003996|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at sc0000038:516662..518043 (Clytia hemisphaerica)
ATATGACTGGCGAGGTTGCCTTTGCTGTTTTGAATAACAGACTCTGGCTA
TATGACCTGGCTTCCCGCAGCGAAAGCAGGTGAGTGGCTTCCTAATtttg
ttttcatcatttttggGCCCCATGGCTTCCACAGCGGCGAGGATGCTCTG
CATGGTGGCTGCGTCATCCCTTGGGGGACTAATTGATTCCTTTAACAAAA
GGGCATGGGTTGCATCGCTGTAGGACTTGGGTTGTTTCATCTGTATATAA
TTCCTATAGGGTAAGTCTAAGCCAGCAATCATAATATCTAGTTTGGTTTG
GTCCGCCACTTCCAGATTATGTGAGAGCTTTTCCACtttttctaagtatt
ttgtaATGCTTTCGCCTTTTTGTTGAATGCCGTGTAGCTCTTGGCGTTTC
CGATATTTCAATCCTGGAGCGTCAAATTCTTTTCGAAGACAATCAGATAA
CTTCTTATAGTCTTCTTTCGAGTTATTAGTTAGGGTCAAAAAGAACGTGT
ACGCTCTATTCTTTAATAATAGAGGTATTACTCTTGCTTTCTGCTGATCG
TTTAATTGGTAAAATGACAATGACAAATCAAGTTTGGTCAAAAACTCAAC
TATGTCTTCATCTGATTGGGCACCAAATTTTGGGAGGGAAGCAATGTCCA
CTCTATTGGCAAGTAGGGAGGTAAGTAAAACTGTGTCTGACATTGGATTC
GACTCTTTCACAATTTTCATTGTGTTATTAGGGTTGGGTTTTTGACTGTC
ACTTCTAAGCCCGCGAATAGCAGGGGTAGAAATGTCAATAGGGAATGGGG
TTTTGGACGAGAAGGGTTCTCCACGATTGACTGGGTCATTTGTTTCCAGT
CGTAATCTTTCTAGGagattttcatggtttttgTTGGTTTTTTCAACGAA
TCGTTCTAAGATTTGGTGGGACTTCTTAAGAGATTCGAAAGCTTCTTCAA
GCTCGTCTCTCAATTTTAGGGACGGGGGTGTGCTATCAAATTGCACTTCT
TCTTGTAAGTTCTTTAGTTCTTGAAGGATCCTGTTGACTTCTTTGGATAG
GGCTTCTTCTTGTTGTGATCCTTTGTGTTGTAGGGATTCAATCGATGGGA
TCGAAGGTGTTCCTGGCTCTTCTGGTTGTCCGTGACCTTGTTCAATCTTC
TGTTCCAATGTTCGGGTGATATCCTTCAAGGTATTGGCGTATTGTCTTTG
GCCATTAGACAACTCGCTGATACTTTGCTTGGCGATTTGGATTCGATATT
GGATATTCTCGTACATCTCTTCCCGTGATTCTTGGTCAACAGAGTCAGTC
CTTGCGTCATGAGTCTTCTCTCCCGTTGAATCCCACTCTTGTCCTAGATG
CATTCTGATTGCACCCAGTGCGTGGCGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003996-exon-sc0000038-1491911889:516662..518043 | TCONS_00003996-exon-sc0000038-1491911889:516662..518043 | Clytia hemisphaerica | exon |
| TCONS_00003996-exon-sc0000038-1510915933:516662..518043 | TCONS_00003996-exon-sc0000038-1510915933:516662..518043 | Clytia hemisphaerica | exon |
| TCONS_00003996-exon-sc0000038-1575043694:516662..518043 | TCONS_00003996-exon-sc0000038-1575043694:516662..518043 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:516662..518043 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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