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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00003996-protein ID=TCONS_00003996-protein|Name=TCONS_00003996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
RRHALGAIRMHLGQEWDSTGEKTHDARTDSVDQESREEMYENIQYRIQIA
KQSISELSNGQRQYANTLKDITRTLEQKIEQGHGQPEEPGTPSIPSIESL
QHKGSQQEEALSKEVNRILQELKNLQEEVQFDSTPPSLKLRDELEEAFES
LKKSHQILERFVEKTNKNHENLLERLRLETNDPVNRGEPFSSKTPFPIDI
STPAIRGLRSDSQKPNPNNTMKIVKESNPMSDTVLLTSLLANRVDIASLP
KFGAQSDEDIVEFLTKLDLSLSFYQLNDQQKARVIPLLLKNRAYTFFLTL
TNNSKEDYKKLSDCLRKEFDAPGLKYRKRQELHGIQQKGESITKYLEKVE
KLSHNLEVADQTKLDIMIAGLDLPYRNYIQMKQPKSYSDATHALLLKESI
SPPRDDAATMQSILAAVEAMGPKNDENKIRKPLTCFRCGKPGHIARVCYS
KQQRQPRQSY Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 342..362 |
| None | No IPR available | COILS | Coil | Coil | coord: 159..182 |
| None | No IPR available | COILS | Coil | Coil | coord: 108..128 |
| None | No IPR available | GENE3D | 1.20.1480.30 | | coord: 39..175
e-value: 0.0015
score: 18.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..37 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 80..111 |
| IPR001878 | Zinc finger, CCHC-type | SMART | SM00343 | c2hcfinal6 | coord: 434..450
e-value: 8.4E-5
score: 31.9 |
| IPR001878 | Zinc finger, CCHC-type | PFAM | PF00098 | zf-CCHC | coord: 434..448
e-value: 1.0E-4
score: 22.1 |
| IPR001878 | Zinc finger, CCHC-type | GENE3D | 4.10.60.10 | | coord: 336..460
e-value: 5.1E-9
score: 35.8 |
| IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 435..448
score: 10.23 |
| IPR001878 | Zinc finger, CCHC-type | SUPERFAMILY | 57756 | Retrovirus zinc finger-like domains | coord: 423..455 |
| IPR005162 | Retrotransposon gag domain | PFAM | PF03732 | Retrotrans_gag | coord: 284..372
e-value: 7.3E-10
score: 38.9 |
Blast
The following BLAST results are available for this feature:
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