TCONS_00003995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003995
Unique NameTCONS_00003995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003995 ID=TCONS_00003995|Name=TCONS_00003995|organism=Clytia hemisphaerica|type=transcript|length=377bp
AATTTACATTAATGCATTTTCACCAATTGCAGCAAAaccaaaaaagccaa
aatagTATGTAGTATGACTGAATCAAATacgtccgaaggcttcaaaaatt
ttggatattcttatccTGAAATAAGTAGCATGGGATCGTTTGAAATTCAT
ACGTCTACTCCAGTCCTATATCCCAATCTACCGGAGCATGTCCCTACAAG
ACCCCACGGGGACACCTGGCCTGGCGGAAAAGTCACTGAGTTTCGTATTA
ATCACTCATTGCTTCCAGCCCAAAATAAACCGTTATTTTCTCTACAAAAA
ATAAGAAGCCAGTAAATGGGCACAAAATCAAATTCCTTCCATAAATATCA
TAAACTTGAACCATAGGAGAGAAAATC
Run BLAST on NCBI

transcript from alignment at sc0000038:490119..490495

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003995 ID=TCONS_00003995|Name=TCONS_00003995|organism=Clytia hemisphaerica|type=transcript|length=377bp|location=Sequence derived from alignment at sc0000038:490119..490495 (Clytia hemisphaerica)
GATTTTCTCTCCTATGGTTCAAGTTTATGATATTTATGGAAGGAATTTGA
TTTTGTGCCCATTTACTGGCTTCTTATTTTTTGTAGAGAAAATAACGGTT
TATTTTGGGCTGGAAGCAATGAGTGATTAATACGAAACTCAGTGACTTTT
CCGCCAGGCCAGGTGTCCCCGTGGGGTCTTGTAGGGACATGCTCCGGTAG
ATTGGGATATAGGACTGGAGTAGACGTATGAATTTCAAACGATCCCATGC
TACTTATTTCAggataagaatatccaaaatttttgaagccttcggacgtA
TTTGATTCAGTCATACTACATActattttggcttttttggtTTTGCTGCA
ATTGGTGAAAATGCATTAATGTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002244XLOC_002244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003995-exon-sc0000038-1491911889:490119..490495TCONS_00003995-exon-sc0000038-1491911889:490119..490495Clytia hemisphaericaexon
TCONS_00003995-exon-sc0000038-1510915933:490119..490495TCONS_00003995-exon-sc0000038-1510915933:490119..490495Clytia hemisphaericaexon
TCONS_00003995-exon-sc0000038-1575043694:490119..490495TCONS_00003995-exon-sc0000038-1575043694:490119..490495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:490119..490495 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633531	0	0.478211	0.233927	6.26525	2.47544	0.271501	1.52506	0.889774	1.98383	0	1.40643	0.280894	0	0.71948	0.514741	0.31706	0	0.224486	0.469817	0.204178	0.298773	0	0.660398	0	0.607057	0.868697	0.309032	0.23439	0.716419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top