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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003994 ID=TCONS_00003994|Name=TCONS_00003994|organism=Clytia hemisphaerica|type=transcript|length=1819bp
GTAAATGCAAGCGTAATACATACTACtgaataaaaaaatcacttcCGTTT
AACTTGTATGATAACTGATGATGCGTAAGCCAAAAAGCTTTTCACAGTAt
ctcaattttcaaaacttaataatGACGACAACTCACTCAAAATTTTTTGG
AAGGACTAAAAAATAAGTAATTTCTCAGAGTATTGTACACctaataaata
aaattaaattaaaataataCTGTAATGTCTAATAAAGTGGCTTGGGTTAA
AAACTGTTTGGGTGAATGCGTGATTGAGTGAAAATTGGAAGAATGAAAGA
ATTGTAAGCTATCTGTTTTACCTAATTTCGATTCATCAAAAAATCATTAT
ATCAAATGCCAAATAAATCTTCATTTCCAATCTGTAGGCAAGGCccgaaa
taacgatttcaagtcCGATCAgagttgctttagcttgaagattatgattt
ttgggtcgaaTAAGaagctacatgtttttttttataagcaagtgtatgcc
ccttggtcaggctcaaGTATGCTTAAGtgttcaaagcatccaggcataat
ttatgcttattatatgcttaagaatcatgcgtatgattcaccccgagcca
agtttttaatgaaatttcaaaaattttgtaaaaattcttCCAATCTGAGC
CttaatatgcttataagtgttatgcttataaaaaaaaacatgtatttggG
TCGGTCAATGTCCGATGTCTGACCGTTATTTCCAGCCCTAGTAGGTGAAG
AGAATTCTTTCTAGAAAAATCTGGCATTTTCTTAAGATGAATATATGAAT
TGacatttaatttttataaaactatttttaaaaattaagttttgaaaaaa
aatactaaaatatctTAGTAAAAAACAGGCAAGAGAATAAGAGGAAATTA
TTCTCTTCAAGGGTTACTTTGATTCAAAACAACATTATATCCCCTGAACA
AAAATCAAGGGGCAGTTAAACGCTGACCATTACAGCTTCTATCAAGAGAC
AACAGAAAGGGGCCAGCAGTTTGGATCCATTGTTCTGGTGTTCTAGACAT
GCTTGCATCTTCACTGAAAATACCTTCAAGCATCTCTGTATTGATCATTC
CAGGGTTTAATGGTGCACAAGCTAGTGGAGAGGGTAAATCTTTAGCTAAG
GCTAGTGATAGTCCCTCAATTGCCCATTTAGAGCAACAGTAAGGTGCCAT
TCCAGCTGCTGTGCTACGACCCCATCCTGAACTGAGGTTAATAATGACAC
CTTTATTTGCTTCCAGCATATGAGGTAGCACCGAATGGATAACATAATTA
ATCCCTTTGATGTTTATATCAATTAGTTTGTCAAAATCTTCAACGCTTAT
TTCCCATAATGGACCAGGTTTGCCTGATATAGCAGCATTATTGATTACTA
AATCCAAGGAACCTGCCTTCTCAATAACAACCTTTATCCAGTCTTGGACG
CCTTTAGCTGATGATGTATCAACAGATTGGAAATTAGATTTGCTAGCCCA
TTCAGATTCATTCAATTTACGAATCGCATCAACATTTCTTCCACACCCAT
ATACCGAGTGTCCATTTTTGGCAAACCAGCTAGTCATTGCCAATCCAATT
CCTTTGGTTACACCAGTTAtgagaatgtttttcttttgctcATGTGCCAT
GGTTTGAGGTAATGAAACAATCTTATAATTATTCTAATAAACTGCaaaat
aacaagtgatacttttatggacctacctggttatttaacacatatatttc
tatgtgagcgtgaccattaaacaatcattcagaacacaagtGACAATCTA
ttgttgtttgtttcttata Run BLAST on NCBI protein sequence of TCONS_00003994-protein >TCONS_00003994-protein ID=TCONS_00003994-protein|Name=TCONS_00003994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MAHEQKKNILITGVTKGIGLAMTSWFAKNGHSVYGCGRNVDAIRKLNESE
WASKSNFQSVDTSSAKGVQDWIKVVIEKAGSLDLVINNAAISGKPGPLWE
ISVEDFDKLIDINIKGINYVIHSVLPHMLEANKGVIINLSSGWGRSTAAG
MAPYCCSKWAIEGLSLALAKDLPSPLACAPLNPGMINTEMLEGIFSEDAS
MSRTPEQWIQTAGPFLLSLDRSCNGQRLTAP Run BLAST on NCBI transcript from alignment at sc0000038:476916..478734 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003994 ID=TCONS_00003994|Name=TCONS_00003994|organism=Clytia hemisphaerica|type=transcript|length=1819bp|location=Sequence derived from alignment at sc0000038:476916..478734 (Clytia hemisphaerica)
tataagaaacaaacaacaaTAGATTGTCacttgtgttctgaatgattgtt
taatggtcacgctcacatagaaatatatgtgttaaataaccaggtaggtc
cataaaagtatcacttgttattttGCAGTTTATTAGAATAATTATAAGAT
TGTTTCATTACCTCAAACCATGGCACATgagcaaaagaaaaacattctca
TAACTGGTGTAACCAAAGGAATTGGATTGGCAATGACTAGCTGGTTTGCC
AAAAATGGACACTCGGTATATGGGTGTGGAAGAAATGTTGATGCGATTCG
TAAATTGAATGAATCTGAATGGGCTAGCAAATCTAATTTCCAATCTGTTG
ATACATCATCAGCTAAAGGCGTCCAAGACTGGATAAAGGTTGTTATTGAG
AAGGCAGGTTCCTTGGATTTAGTAATCAATAATGCTGCTATATCAGGCAA
ACCTGGTCCATTATGGGAAATAAGCGTTGAAGATTTTGACAAACTAATTG
ATATAAACATCAAAGGGATTAATTATGTTATCCATTCGGTGCTACCTCAT
ATGCTGGAAGCAAATAAAGGTGTCATTATTAACCTCAGTTCAGGATGGGG
TCGTAGCACAGCAGCTGGAATGGCACCTTACTGTTGCTCTAAATGGGCAA
TTGAGGGACTATCACTAGCCTTAGCTAAAGATTTACCCTCTCCACTAGCT
TGTGCACCATTAAACCCTGGAATGATCAATACAGAGATGCTTGAAGGTAT
TTTCAGTGAAGATGCAAGCATGTCTAGAACACCAGAACAATGGATCCAAA
CTGCTGGCCCCTTTCTGTTGTCTCTTGATAGAAGCTGTAATGGTCAGCGT
TTAACTGCCCCTTGATTTTTGTTCAGGGGATATAATGTTGTTTTGAATCA
AAGTAACCCTTGAAGAGAATAATTTCCTCTTATTCTCTTGCCTGTTTTTT
ACTAagatattttagtattttttttcaaaacttaatttttaaaaatagtt
ttataaaaattaaatgtCAATTCATATATTCATCTTAAGAAAATGCCAGA
TTTTTCTAGAAAGAATTCTCTTCACCTACTAGGGCTGGAAATAACGGTCA
GACATCGGACATTGACCGACccaaatacatgtttttttttataagcataa
cacttataagcatattaaGGCTCAGATTGGaagaatttttacaaaatttt
tgaaatttcattaaaaacttggctcggggtgaatcatacgcatgattctt
aagcatataataagcataaattatgcctggatgctttgaacaCTTAAGCA
TACttgagcctgaccaaggggcatacacttgcttataaaaaaaaacatgt
agcttCTTAttcgacccaaaaatcataatcttcaagctaaagcaactcTG
ATCGgacttgaaatcgttatttcggGCCTTGCCTACAGATTGGAAATGAA
GATTTATTTGGCATTTGATATAATGATTTTTTGATGAATCGAAATTAGGT
AAAACAGATAGCTTACAATTCTTTCATTCTTCCAATTTTCACTCAATCAC
GCATTCACCCAAACAGTTTTTAACCCAAGCCACTTTATTAGACATTACAG
tattattttaatttaattttatttattagGTGTACAATACTCTGAGAAAT
TACTTATTTTTTAGTCCTTCCAAAAAATTTTGAGTGAGTTGTCGTCatta
ttaagttttgaaaattgagaTACTGTGAAAAGCTTTTTGGCTTACGCATC
ATCAGTTATCATACAAGTTAAACGgaagtgatttttttattcaGTAGTAT
GTATTACGCTTGCATTTAC Coding sequence (CDS) from alignment at sc0000038:476916..478734 >TCONS_00003994 ID=TCONS_00003994|Name=TCONS_00003994|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000038:476916..478734 (Clytia hemisphaerica)
ATGGCACATgagcaaaagaaaaacattctcaTAACTGGTGTAACCAAAGG
AATTGGATTGGCAATGACTAGCTGGTTTGCCAAAAATGGACACTCGGTAT
ATGGGTGTGGAAGAAATGTTGATGCGATTCGTAAATTGAATGAATCTGAA
TGGGCTAGCAAATCTAATTTCCAATCTGTTGATACATCATCAGCTAAAGG
CGTCCAAGACTGGATAAAGGTTGTTATTGAGAAGGCAGGTTCCTTGGATT
TAGTAATCAATAATGCTGCTATATCAGGCAAACCTGGTCCATTATGGGAA
ATAAGCGTTGAAGATTTTGACAAACTAATTGATATAAACATCAAAGGGAT
TAATTATGTTATCCATTCGGTGCTACCTCATATGCTGGAAGCAAATAAAG
GTGTCATTATTAACCTCAGTTCAGGATGGGGTCGTAGCACAGCAGCTGGA
ATGGCACCTTACTGTTGCTCTAAATGGGCAATTGAGGGACTATCACTAGC
CTTAGCTAAAGATTTACCCTCTCCACTAGCTTGTGCACCATTAAACCCTG
GAATGATCAATACAGAGATGCTTGAAGGTATTTTCAGTGAAGATGCAAGC
ATGTCTAGAACACCAGAACAATGGATCCAAACTGCTGGCCCCTTTCTGTT
GTCTCTTGATAGAAGCTGTAATGGTCAGCGTTTAACTGCCCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003994-exon-sc0000038-1491911889:476916..478734 | TCONS_00003994-exon-sc0000038-1491911889:476916..478734 | Clytia hemisphaerica | exon |
| TCONS_00003994-exon-sc0000038-1510915933:476916..478734 | TCONS_00003994-exon-sc0000038-1510915933:476916..478734 | Clytia hemisphaerica | exon |
| TCONS_00003994-exon-sc0000038-1575043694:476916..478734 | TCONS_00003994-exon-sc0000038-1575043694:476916..478734 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:476916..478734 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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