TCONS_00003983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003983
Unique NameTCONS_00003983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003983 ID=TCONS_00003983|Name=TCONS_00003983|organism=Clytia hemisphaerica|type=transcript|length=613bp
gCCATTGTTACACTGGGCAAATGATTCattcaaagaaatttgtttatttt
tttcagattgatCTAAATTTCTTTGAATCTTCCAATCAACTCTTCGTGCC
TTTCTCTCTTTAGTTGCTCGATTGTTCTTTGCATATGCGGCCGATTCAGT
TACAGCTCCCATGATAAGCGTTGAAGATAGATTCTCGTCTTTATTTCCAA
TGGTGGATATCCCAGCCTTTGTCACTCCTGATACTGCACCAGCAGCCACC
CTGGAGACTACTTTTCCTGTTCCACGGTTGAGATTGAGATTTGTAGCCAC
ACTAGCAGCTTTGTCGTCAAGATTTCTAGATGTTGATGATATAGCACTTC
CTGCAGCTCCTGACAAGGCACCTTTCCATAATGCACTTCCATCAAATTTT
TCTCCTGCGGCTACTCTTGCTCCTTGCCGAATAGCGCTATCTCCGACCCC
GACAATAGTCTCTGTAGATGCACGAGTAACAGCTTTGGCAACACCCCTTG
AAGCAACCTGACCAAACTTATCTGCAGCTTTATTTGCCACGGCACCGCTA
ATTCCCGCTGCGGCTCCACCAAGTGCGCCTGTGGCTGCCCCTGCCCAGAG
TGCATGACCGTTA
Run BLAST on NCBI

protein sequence of TCONS_00003983-protein

>TCONS_00003983-protein ID=TCONS_00003983-protein|Name=TCONS_00003983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
NGHALWAGAATGALGGAAAGISGAVANKAADKFGQVASRGVAKAVTRAST
ETIVGVGDSAIRQGARVAAGEKFDGSALWKGALSGAAGSAISSTSRNLDD
KAASVATNLNLNRGTGKVVSRVAAGAVSGVTKAGISTIGNKDENLSSTLI
MGAVTESAAYAKNNRATKERKARRVDWKIQRNLDQSEKNKQISLNESFAQ
CNNG
Run BLAST on NCBI

transcript from alignment at sc0000038:255052..255664

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003983 ID=TCONS_00003983|Name=TCONS_00003983|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0000038:255052..255664 (Clytia hemisphaerica)
TAACGGTCATGCACTCTGGGCAGGGGCAGCCACAGGCGCACTTGGTGGAG
CCGCAGCGGGAATTAGCGGTGCCGTGGCAAATAAAGCTGCAGATAAGTTT
GGTCAGGTTGCTTCAAGGGGTGTTGCCAAAGCTGTTACTCGTGCATCTAC
AGAGACTATTGTCGGGGTCGGAGATAGCGCTATTCGGCAAGGAGCAAGAG
TAGCCGCAGGAGAAAAATTTGATGGAAGTGCATTATGGAAAGGTGCCTTG
TCAGGAGCTGCAGGAAGTGCTATATCATCAACATCTAGAAATCTTGACGA
CAAAGCTGCTAGTGTGGCTACAAATCTCAATCTCAACCGTGGAACAGGAA
AAGTAGTCTCCAGGGTGGCTGCTGGTGCAGTATCAGGAGTGACAAAGGCT
GGGATATCCACCATTGGAAATAAAGACGAGAATCTATCTTCAACGCTTAT
CATGGGAGCTGTAACTGAATCGGCCGCATATGCAAAGAACAATCGAGCAA
CTAAAGAGAGAAAGGCACGAAGAGTTGATTGGAAGATTCAAAGAAATTTA
GatcaatctgaaaaaaataaacaaatttctttgaatGAATCATTTGCCCA
GTGTAACAATGGc

Coding sequence (CDS) from alignment at sc0000038:255052..255664

>TCONS_00003983 ID=TCONS_00003983|Name=TCONS_00003983|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000038:255052..255664 (Clytia hemisphaerica)
AACGGTCATGCACTCTGGGCAGGGGCAGCCACAGGCGCACTTGGTGGAGC
CGCAGCGGGAATTAGCGGTGCCGTGGCAAATAAAGCTGCAGATAAGTTTG
GTCAGGTTGCTTCAAGGGGTGTTGCCAAAGCTGTTACTCGTGCATCTACA
GAGACTATTGTCGGGGTCGGAGATAGCGCTATTCGGCAAGGAGCAAGAGT
AGCCGCAGGAGAAAAATTTGATGGAAGTGCATTATGGAAAGGTGCCTTGT
CAGGAGCTGCAGGAAGTGCTATATCATCAACATCTAGAAATCTTGACGAC
AAAGCTGCTAGTGTGGCTACAAATCTCAATCTCAACCGTGGAACAGGAAA
AGTAGTCTCCAGGGTGGCTGCTGGTGCAGTATCAGGAGTGACAAAGGCTG
GGATATCCACCATTGGAAATAAAGACGAGAATCTATCTTCAACGCTTATC
ATGGGAGCTGTAACTGAATCGGCCGCATATGCAAAGAACAATCGAGCAAC
TAAAGAGAGAAAGGCACGAAGAGTTGATTGGAAGATTCAAAGAAATTTAG
atcaatctgaaaaaaataaacaaatttctttgaatGAATCATTTGCCCAG
TGTAACAATGGc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002232XLOC_002232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003983-exon-sc0000038-1491911889:255052..255664TCONS_00003983-exon-sc0000038-1491911889:255052..255664Clytia hemisphaericaexon
TCONS_00003983-exon-sc0000038-1510915933:255052..255664TCONS_00003983-exon-sc0000038-1510915933:255052..255664Clytia hemisphaericaexon
TCONS_00003983-exon-sc0000038-1575043694:255052..255664TCONS_00003983-exon-sc0000038-1575043694:255052..255664Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003983-proteinTCONS_00003983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:255052..255664 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.09943	0	0	0	0.225803	0.634183	3.03404	4.76643	4.89333	1.81304	3.91305	5.51942	22.8381	12.2009	6.65825	4.72985	30.2456	9.76846	2.03774	1.36666	2.31583	3.20391	8.01417	9.42441	0.120413	1.41359	2.33926	1.29097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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