TCONS_00003980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003980
Unique NameTCONS_00003980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003980 ID=TCONS_00003980|Name=TCONS_00003980|organism=Clytia hemisphaerica|type=transcript|length=816bp
AGAGTGTTTaaaaagagttcttataaaaataggaATTAccgcgggagagt
ggtttgAAAAGTGAACATAGCGAGTCCATTGCAAGCGTAAGCTGCAGCAA
AATACAACgccgtggtttactagtctaaatGATGTATTGTtgaccctctc
taattcgatcttcaagaaacataaaattatcaaaacacattttttaccca
caaataaaacttttttataactTTGTCTACTACACTTTATGGTTAGCAAA
ACCAGGCGCCTGACCTTGAACATAGCATCCAAACAAGgtccatctaacgt
tcataaaattcttataataaCACGGTAGACCAACGTCGCTATGTGAAATG
GCTGCACTCCATGCTAGGCTAAACCAGGAATCCAAAGAAATTCTATGTGA
GACAGACTTTCCCCTGCACATCTATGTGGGAAGGGGCCAACAACATACCA
ATCGAAACTGAAAAAATTGTGAATTCGTAGACAATCAAGAGAGACTTTTC
CTTATACATCTATGTGGGAAGGGGAAACGATGTCTGTGCTCATGTGAAGC
TCATATGAGAGAATTCAAAGATATCACAATATGAAATACACAGTTTTTTC
TCTAAGAACAAAGTGTATAAGAATATCATCAAGCGCTTCCAAGGCTAAAA
AGTATAATGACATTAAATGTCAAACTGGTCTTTGCGAACATAAAAAATGC
AATTTCTAGGAAAACCATATAATAAGGAAATACTgatcattaaaatattt
ttagaggAACATTTTCTAGGCTTAGGCAGACATAACTCACTAAGGTAAGA
ACATCTGAAGATCTCT
Run BLAST on NCBI

transcript from alignment at sc0000038:184719..185534

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003980 ID=TCONS_00003980|Name=TCONS_00003980|organism=Clytia hemisphaerica|type=transcript|length=816bp|location=Sequence derived from alignment at sc0000038:184719..185534 (Clytia hemisphaerica)
AGAGATCTTCAGATGTTCTTACCTTAGTGAGTTATGTCTGCCTAAGCCTA
GAAAATGTTcctctaaaaatattttaatgatcAGTATTTCCTTATTATAT
GGTTTTCCTAGAAATTGCATTTTTTATGTTCGCAAAGACCAGTTTGACAT
TTAATGTCATTATACTTTTTAGCCTTGGAAGCGCTTGATGATATTCTTAT
ACACTTTGTTCTTAGAGAAAAAACTGTGTATTTCATATTGTGATATCTTT
GAATTCTCTCATATGAGCTTCACATGAGCACAGACATCGTTTCCCCTTCC
CACATAGATGTATAAGGAAAAGTCTCTCTTGATTGTCTACGAATTCACAA
TTTTTTCAGTTTCGATTGGTATGTTGTTGGCCCCTTCCCACATAGATGTG
CAGGGGAAAGTCTGTCTCACATAGAATTTCTTTGGATTCCTGGTTTAGCC
TAGCATGGAGTGCAGCCATTTCACATAGCGACGTTGGTCTACCGTGttat
tataagaattttatgaacgttagatggacCTTGTTTGGATGCTATGTTCA
AGGTCAGGCGCCTGGTTTTGCTAACCATAAAGTGTAGTAGACAAagttat
aaaaaagttttatttgtgggtaaaaaatgtgttttgataattttatgttt
cttgaagatcgaattagagagggtcaACAATACATCatttagactagtaa
accacggcGTTGTATTTTGCTGCAGCTTACGCTTGCAATGGACTCGCTAT
GTTCACTTTTcaaaccactctcccgcggTAATtcctatttttataagaac
tctttttAAACACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002229XLOC_002229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003980-exon-sc0000038-1491911889:184719..185534TCONS_00003980-exon-sc0000038-1491911889:184719..185534Clytia hemisphaericaexon
TCONS_00003980-exon-sc0000038-1510915933:184719..185534TCONS_00003980-exon-sc0000038-1510915933:184719..185534Clytia hemisphaericaexon
TCONS_00003980-exon-sc0000038-1575043694:184719..185534TCONS_00003980-exon-sc0000038-1575043694:184719..185534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:184719..185534 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.292238	0.39897	0	0.129489	0.70938	0.8097	0.300575	0.562789	0.246264	0.122015	0.355292	0.46711	0.194359	0.282581	0.0331885	0.106849	0.394888	0.584635	0.0621312	0.390095	0.339063	0.578841	0.40209	0.304632	0.188258	0.0560053	0.160287	0.513187	0.973086	0.925326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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