TCONS_00003974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003974
Unique NameTCONS_00003974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003974 ID=TCONS_00003974|Name=TCONS_00003974|organism=Clytia hemisphaerica|type=transcript|length=603bp
ttagcagaaaaagaccaggacttcgggtagttgaaaaatgagcttcagaa
agttaggcagtttcgtgagtaaacacaagattttccataccattagaaac
aaaccctttccaatctcatgccggtTATCCCAGGAAAAATTGCGGAAAGA
AACAGGTTGtccatttcaatttcaatttccatTTAACATCCATTGATCTA
AATGTAACTTCATGATTAAACAATCGTAAAACTATtaaaatcagtttcaa
aatcATTGTTGACAATTTCGCTATTATTTTCATCATCAGGTGTAATCCAG
GCTTTATTAACCGTTGAATAAGCATAAGGCCCGTTTTCTTCTACAGGAGA
TTCGAATGGGTCGTTGTTAACATAAATCTCTTCATCATTTGCATAATTAC
GAGTGTGTAAAggtaaatttaaatttggtcTTATATGTTGATGTGATTGT
ACTGCGATATCAGTTTGGAAGTAAAACGGCTCTAAATCATTTTCCTTCTT
TTCTTGATTTGaagtatttttaaaatcaaaatcgtTTGGATCGTGATAAA
tttcttcagtttcaaaatattcattttctaCTGGTTCTTCGTTTTCCTCA
GAT
Run BLAST on NCBI

protein sequence of TCONS_00003974-protein

>TCONS_00003974-protein ID=TCONS_00003974-protein|Name=TCONS_00003974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
SEENEEPVENEYFETEEIYHDPNDFDFKNTSNQEKKENDLEPFYFQTDIA
VQSHQHIRPNLNLPLHTRNYANDEEIYVNNDPFESPVEENGPYAYSTVNK
AWITPDDENNSEIVNNDFETDFNSFTIV
Run BLAST on NCBI

transcript from alignment at sc0000038:97395..97997

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003974 ID=TCONS_00003974|Name=TCONS_00003974|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000038:97395..97997 (Clytia hemisphaerica)
ATCTGAGGAAAACGAAGAACCAGtagaaaatgaatattttgaaactgaag
aaaTTTATCACGATCCAAacgattttgattttaaaaatacttCAAATCAA
GAAAAGAAGGAAAATGATTTAGAGCCGTTTTACTTCCAAACTGATATCGC
AGTACAATCACATCAACATATAAgaccaaatttaaatttaccTTTACACA
CTCGTAATTATGCAAATGATGAAGAGATTTATGTTAACAACGACCCATTC
GAATCTCCTGTAGAAGAAAACGGGCCTTATGCTTATTCAACGGTTAATAA
AGCCTGGATTACACCTGATGATGAAAATAATAGCGAAATTGTCAACAATg
attttgaaactgattttaATAGTTTTACGATTGTTTAATCATGAAGTTAC
ATTTAGATCAATGGATGTTAAatggaaattgaaattgaaatggaCAACCT
GTTTCTTTCCGCAATTTTTCCTGGGATAaccggcatgagattggaaaggg
tttgtttctaatggtatggaaaatcttgtgtttactcacgaaactgccta
actttctgaagctcatttttcaactacccgaagtcctggtctttttctgc
taa

Coding sequence (CDS) from alignment at sc0000038:97395..97997

>TCONS_00003974 ID=TCONS_00003974|Name=TCONS_00003974|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000038:97395..97997 (Clytia hemisphaerica)
TCTGAGGAAAACGAAGAACCAGtagaaaatgaatattttgaaactgaaga
aaTTTATCACGATCCAAacgattttgattttaaaaatacttCAAATCAAG
AAAAGAAGGAAAATGATTTAGAGCCGTTTTACTTCCAAACTGATATCGCA
GTACAATCACATCAACATATAAgaccaaatttaaatttaccTTTACACAC
TCGTAATTATGCAAATGATGAAGAGATTTATGTTAACAACGACCCATTCG
AATCTCCTGTAGAAGAAAACGGGCCTTATGCTTATTCAACGGTTAATAAA
GCCTGGATTACACCTGATGATGAAAATAATAGCGAAATTGTCAACAATga
ttttgaaactgattttaATAGTTTTACGATTGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002223XLOC_002223Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003974-proteinTCONS_00003974-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003974-exon-sc0000038-1491911889:97395..97997TCONS_00003974-exon-sc0000038-1491911889:97395..97997Clytia hemisphaericaexon
TCONS_00003974-exon-sc0000038-1510915933:97395..97997TCONS_00003974-exon-sc0000038-1510915933:97395..97997Clytia hemisphaericaexon
TCONS_00003974-exon-sc0000038-1575043694:97395..97997TCONS_00003974-exon-sc0000038-1575043694:97395..97997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:97395..97997 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08054	0.790273	0.787404	0.398983	0.364292	0.191912	0.240483	0.867038	0.910551	0.657921	0.364911	0.845637	0.479089	0.373154	2.55653	1.15229	0.878754	0.346421	1.17967	0.600984	0.348243	0.509582	0.421686	0.281591	0.320438	0.172564	0.370409	0.658851	0.299829	0.407304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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