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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003966 ID=TCONS_00003966|Name=TCONS_00003966|organism=Clytia hemisphaerica|type=transcript|length=1173bp aaaaaaatgagaaacatttTCAAGCCACAGAAAGTAGCTGGCAAGGAAGA AACTAAATCTGACTTTTACAAAAGATGTTCACACACATACACATCAAAAT ATCCTTTCCTGACAAAGGTTCAAATCAAAGCTAAGGTCAATATTGCCTGG AAAAAGCTacagaagaaaagaaaatctttagaAGAGATAGACGTTGGGAA GAATGATAATTTGGATGTTTCCTCAGAATCCAGCGCTTCACAATGTagTA GAGATGCTGTTGTACCATCTCCTGAAATTCTAAACGATGAAGATTTGGAC AAATTGGAATGTAGTTCGAATTCCACTTCAGTGAAAGAAGTTATGGATAT TCCGGACACTCCAGAAAGTGGACTTTCCCCTAGCGGTAAAGAGAACATTT CTCCGGTCATTCTTGAAGGCGGAAAAATCCAAGACGTTGTGGATTCTTGT ACTACCGAAGATGTTGTTTCGGAAGACATTGAAATGATTGAAATAAGTAA TCCTTTAACTAAAGCTCCTCACcaaaattttatgaaagaaatTGAGCTCA TTGAAAACGCTGAAAGTGATATCGGAGACGATATTGAATTCAAGGTGACG TGTAAAACACAGACCGAACAGCAATCTAAATCGCTTAATGAGGATAAAAA GTCTGTAGAATGTTCTCAACACGAGGATTCTGGATTGGGTGAAAAGCATA TAGATTCAAAACTTGATGATTGTCTGGATGTTGAAAATAGAATCGACCTA GAAGAGAGTTCGTCAAAGAACGTTTCAGCCTTGGTCGAAAGTGACAGAGA ATCTAACATTGTTGATTTGGGGGAAGATGAAAAATCTCTTCACAATATAC AGTGTAGTACTGATAACAATTTTAAGTTGGATTTAAGAACAGTTGAAAAA CAAAACGATATTGAGGTTACTGAGATCCTTGACAGTCCACCTGAAAACCA AAAAGTTgataatgatgatgattttgCGAATGAAGAGCTATCTGGTAATA AGCCTGGTCAAGTAACACACAAGAATAGTGAAAATACTCAAGAGAGCGTG CATTTAAACAACGAAAAGAATGACGAAGAATTTACACTTAAAAACAACGA GTCTTGTGTGGGAACTGGATTAAACAACggaaaaagtgaagaaatttcag ATGCAAGTGACGTAAAACAGCTC Run BLAST on NCBI protein sequence of TCONS_00003966-protein >TCONS_00003966-protein ID=TCONS_00003966-protein|Name=TCONS_00003966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
KKMRNIFKPQKVAGKEETKSDFYKRCSHTYTSKYPFLTKVQIKAKVNIAW KKLQKKRKSLEEIDVGKNDNLDVSSESSASQCSRDAVVPSPEILNDEDLD KLECSSNSTSVKEVMDIPDTPESGLSPSGKENISPVILEGGKIQDVVDSC TTEDVVSEDIEMIEISNPLTKAPHQNFMKEIELIENAESDIGDDIEFKVT CKTQTEQQSKSLNEDKKSVECSQHEDSGLGEKHIDSKLDDCLDVENRIDL EESSSKNVSALVESDRESNIVDLGEDEKSLHNIQCSTDNNFKLDLRTVEK QNDIEVTEILDSPPENQKVDNDDDFANEELSGNKPGQVTHKNSENTQESV HLNNEKNDEEFTLKNNESCVGTGLNNGKSEEISDASDVKQL Run BLAST on NCBI transcript from alignment at sc0000038:858905..863226- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003966 ID=TCONS_00003966|Name=TCONS_00003966|organism=Clytia hemisphaerica|type=transcript|length=4322bp|location=Sequence derived from alignment at sc0000038:858905..863226- (Clytia hemisphaerica) AAAAAAATGAGAAACATTTTCAAGCCACAGAAAGTAGCTGGCAAGGAAGA
AACTAAATCTGACTTTTACAAAAGATGTTCACACACATACACATCAAAAT
ATCCTTTCCTGACAAAGGTTCAAATCAAAGCTAAGGTCAATATTGCCTGG
AAAAAGCTACAGAAGAAAAGAAAATCTTTAGAAGGTAAAAAAATACTGTT
TATACTTTTTGTTATGGAATGTTGGNGTAGCTGGCAAGGAAGAAACTAAA
TCTGACTTTTACAAAAGATGTTCACACACATACACATCAAAATATCCTTT
CCTGACAAAGGTTCAAATTAAAGCTAAGGTCAATATTGCCTGGAAAAAGC
TACAGAAGAAAAGAAAATCTTTAGAAGGTAAAAAGTACTGTTTATATTTT
TTGTTTTGGAATGTTTGAGTGTAAGAGTAGAGTGGTAAGAATATAACGCT
TAAAAATCTTTACATTTGGCAGTGTGTGTTCATCTAATATTTGTACAATT
TAACAAAAGTTTTCTTATTTTGCATCTGAAAATAATGTCCAATATTAAAT
TGTGCAAATTTTTGTTCTCTATGTATTATTATTTCATCAGAAAATATATC
TTACCGTCAACTGCTCTAACTTGGGACGATTGGTCGAAACATGGGACTGC
TGACAATCTGGCCTGTATTTTCACTTACTGCTAAATCTCTTTGACAATAA
ATTTGTTTTGATAACTCCACCAAGTTTATCAATCATACTTCTTCGTTCCT
CTTAGAGTACACAGACACTCGCGTGTGTTCCACTACGGATTTTTTTCATA
TTTTGATTTAAAAGCCTACTCGATGCGAAAGAGAAATCGTGTATTTTTTA
ATACGCTGTTCATTAACTCAAATCAAATGACTTTGGAGGTTCGGTGAAAT
GGTGGCCCATGTTAGATCAGTTGACAGACCTTCAATCCAAAAATCAACTG
GAAATTAGCATTTTACAAGAGCAAATTCTTAGAATGTGACTTTGCGGAGC
TGTATCTGTCTTTTTCATTGTACTACAAGTCTTTTTGCACACTTGTTTTA
ACATCTTTGAAGACCATTATGGCATCATTAGAATTAAATGAAATTGGCTA
GAAGGTCCCTTTTTGAGCCTTTTTTTTGGACCTACCACGGAGGTCCTCTA
AATTAAATGATGTTCGTTCGTTCGTCATTTTTAGGGAATTATGAGCATTT
CTCGCGATTGGTTTGGTACTTTTTTCTAATTCTTCACTTTGTTTTTCTTA
CCATTATTGCCATTTTCTCATTGCATTAGTCGTCAGGTAGGTCCATTTAG
CATGTAGCTTGTTAGTCCTAATTTTACAGATTTTCAAAAATGCTAAAAAT
TGCTCATAAGAGGGCCCTGTCACAGCTACAGTTTCAGGGAAAAGTTCTTT
TGAGATCTTATCAGTACTGTAAAAGTTTGGGACCATGAAACACATGCATT
CAGATTTTAGCTTTTTTGAAAATGTCAAAAACGAAACAATCATAAAACAT
TGTCCTTTTAGAGAATGGTTGGGAAAGTGCTAGGGACATAATAAATAGAA
AGAAATATTTAACTTTGAAGAAAAAGCTTTTAAATTTTTTTAAAAAATAG
GTAAGAATAAGATAGGTGGAAGTAAATTAGTCTAAAACATCTAGCTCCTT
GAACATGTAGAAAAATGTCATTGATAAATTTAAAAAACCCTGTTTTTATA
TCTTCAGAGATAGACGTTGGGAAGAATGATAATTTGGATGTTTCCTCAGA
ATCCAGCGCTTCACAATGTGTAAGTTATTAAATACCTTAAAGGAAGAAAT
TTCGGCGGATTTGGCGGATTTGGCCAGAATCCGCCAAATTAAACTCCCGC
CAAATTAAACTTTTTGAAAATATGGTTTCTTTCAAGGTGTTTTTGCATTT
TTTTTTGCTGTTTTTACGCCATTTTAAGGATAGTTTTTTCAGCAAACTCC
AAATTGAATTCCCGCCAAATTAAGTTTTTTCGTCCATCCGCCAAATTAAA
TTCCCTCTAAAAAAACTTTTTCGGCCAACCGCCAAATTAAATTCCCGCCA
AAATTTCTTCCTTTAAGGTATAATGCGTCTGGAAAAATTGACTATCGAAT
CATTTAGCTTCTCCATGGATAGTAACAGGGCGGAGTTTTAAGGTTCATCT
GAAACGCTATGACAGCTACTTTGTTAGTAGTTCAAAGGTTTTTGTTTCAC
ATTTCCCGTTTCATGTCAGACACGTATGTTTTATATCAGGTCTGCCTATT
GTTATATTATGTGCGATTTTGTACTGGATAAACAAAAAAATTCCCCTATT
TATGATCAATCTTTCTCCACATCCGTGTCGATTCGATGTGAAAAAAGCTT
GTAAATTACCTTAAGGGAAATTATTTTGGCAGGAACTAATTTTGGCGGAT
TTAAAATTCGCCAAAATTAGTTCCCGCCAAAATTAAATATTTTGCTCCCT
CGTCAAAATAAGTTCCCGTCAAAATTTAAGTTTTTGTTTAAATAGCCCCT
GAAATTCATCGAAATTGCTCAAAATAAGACAAAATAGAACAGATTTACGC
CGTCATTCGCCAAAATTAGTTCCCACCAAAATTAAAAAATTTCATCATTC
GCCAAAATAAGTTCCCGCCAAAATAAGTGCCCTTAAGGTAAAATTGACGA
TATCAAACTTATTTAAAAATAAAACCTTTGGATTTGGGTTTTTGGAGGAT
ATTATAAAGGGTTTTCATAATAATCTGATTTTTTTCACAAATTTATTTTG
GAATCTTCTTCACATTTCCTTAAGGGAACTTATTTTGGCGAATGATGAAA
TTTTTTAATTTTGGTGGGTACTAATTTTGGCGAATTTAAAATTCGCCAAA
ATTAGTACCCACCAAAATTAAAAAATTTCATCATTCGCCAAAATAAGTTC
CCGCCAAAATTAAAAGTCTTTAAGATTTTTGCTGAACGCCAAAATTAGTT
CCCGCCAAAATAAGTTCCCTTAAGGTAAAATTGACGATATCAAACTTATT
TAAAAATAAAACCTTTGAATTTGGGTTTTTGGAGGATATTATAAAGGGTT
TTCATAATAATCTGATTTTTTTTACAAATTTATTTTGGAATCTTCTTCAC
ATTTCCTTAGGTAAATCAATGTCGTAAGAGTGCTCGTGCTCGATGAGTTA
AAAAAAAAGTTCTATTTTCTACAAAGTTTAAGAAAAAAGACTAGCAAAAT
ATTTTCAAGAAACGAACTAAAAAACTTATTTTTTGATACATTTTTTATGA
AAGTAACAGAAAATTACTACAAATTTGAATTGATTTTAGAGAAAAAAGGC
CCTTGTCAAGGATAAGTGGTATATGTTTGCAAAATAGTTCCTATTTAAGA
TAAAAAAAATCTTAACGACAATTTTAAATATTTTTCTATTTTCAGAGTAG
AGATGCTGTTGTACCATCTCCTGAAATTCTAAACGATGAAGATTTGGACA
AATTGGAATGTAGTTCGAATTCCACTTCAGTGAAAGAAGTTATGGATATT
CCGGACACTCCAGAAAGTGGACTTTCCCCTAGCGGTAAAGAGAACATTTC
TCCGGTCATTCTTGAAGGCGGAAAAATCCAAGACGTTGTGGATTCTTGTA
CTACCGAAGATGTTGTTTCGGAAGACATTGAAATGATTGAAATAAGTAAT
CCTTTAACTAAAGCTCCTCACCAAAATTTTATGAAAGAAATTGAGCTCAT
TGAAAACGCTGAAAGTGATATCGGAGACGATATTGAATTCAAGGTGACGT
GTAAAACACAGACCGAACAGCAATCTAAATCGCTTAATGAGGATAAAAAG
TCTGTAGAATGTTCTCAACACGAGGATTCTGGATTGGGTGAAAAGCATAT
AGATTCAAAACTTGATGATTGTCTGGATGTTGAAAATAGAATCGACCTAG
AAGAGAGTTCGTCAAAGAACGTTTCAGCCTTGGTCGAAAGTGACAGAGAA
TCTAACATTGTTGATTTGGGGGAAGATGAAAAATCTCTTCACAATATACA
GTGTAGTACTGATAACAATTTTAAGTTGGATTTAAGAACAGTTGAAAAAC
AAAACGATATTGAGGTTACTGAGATCCTTGACAGTCCACCTGAAAACCAA
AAAGTTGATAATGATGATGATTTTGCGAATGAAGAGCTATCTGGTAATAA
GCCTGGTCAAGTAACACACAAGAATAGTGAAAATACTCAAGAGAGCGTGC
ATTTAAACAACGAAAAGAATGACGAAGAATTTACACTTAAAAACAACGAG
TCTTGTGTGGGAACTGGATTAAACAACGGAAAAAGTGAAGAAATTTCAGA
TGCAAGTGACGTAAAACAGCTC Coding sequence (CDS) from alignment at sc0000038:858905..863226- >TCONS_00003966 ID=TCONS_00003966|Name=TCONS_00003966|organism=Clytia hemisphaerica|type=CDS|length=3519bp|location=Sequence derived from alignment at sc0000038:858905..863226- (Clytia hemisphaerica) AGTAGAGATGCTGTTGTACCATCTCCTGAAATTCTAAACGATGAAGATTT GGACAAATTGGAATGTAGTTCGAATTCCACTTCAGTGAAAGAAGTTATGG ATATTCCGGACACTCCAGAAAGTGGACTTTCCCCTAGCGGTAAAGAGAAC ATTTCTCCGGTCATTCTTGAAGGCGGAAAAATCCAAGACGTTGTGGATTC TTGTACTACCGAAGATGTTGTTTCGGAAGACATTGAAATGATTGAAATAA GTAATCCTTTAACTAAAGCTCCTCACCAAAATTTTATGAAAGAAATTGAG CTCATTGAAAACGCTGAAAGTGATATCGGAGACGATATTGAATTCAAGGT GACGTGTAAAACACAGACCGAACAGCAATCTAAATCGCTTAATGAGGATA AAAAGTCTGTAGAATGTTCTCAACACGAGGATTCTGGATTGGGTGAAAAG CATATAGATTCAAAACTTGATGATTGTCTGGATGTTGAAAATAGAATCGA CCTAGAAGAGAGTTCGTCAAAGAACGTTTCAGCCTTGGTCGAAAGTGACA GAGAATCTAACATTGTTGATTTGGGGGAAGATGAAAAATCTCTTCACAAT ATACAGTGTAGTACTGATAACAATTTTAAGTTGGATTTAAGAACAGTTGA AAAACAAAACGATATTGAGGTTACTGAGATCCTTGACAGTCCACCTGAAA ACCAAAAAGTTGATAATGATGATGATTTTGCGAATGAAGAGCTATCTGGT AATAAGCCTGGTCAAGTAACACACAAGAATAGTGAAAATACTCAAGAGAG CGTGCATTTAAACAACGAAAAGAATGACGAAGAATTTACACTTAAAAACA ACGAGTCTTGTGTGGGAACTGGATTAAACAACGGAAAAAGTGAAGAAATT TCAGATGCAAGTGACGTAAAACAGCTCAGATAGACGTTGGGAAGAATGAT AATTTGGATGTTTCCTCAGAATCCAGCGCTTCACAATGTAAAAAAATGAG AAACATTTTCAAGCCACAGAAAGTAGCTGGCAAGGAAGAAACTAAATCTG ACTTTTACAAAAGATGTTCACACACATACACATCAAAATATCCTTTCCTG ACAAAGGTTCAAATCAAAGCTAAGGTCAATATTGCCTGGAAAAAGCTACA GAAGAAAAGAAAATCTTTAGAAGAGTAGAGATGCTGTTGTACCATCTCCT GAAATTCTAAACGATGAAGATTTGGACAAATTGGAATGTAGTTCGAATTC CACTTCAGTGAAAGAAGTTATGGATATTCCGGACACTCCAGAAAGTGGAC TTTCCCCTAGCGGTAAAGAGAACATTTCTCCGGTCATTCTTGAAGGCGGA AAAATCCAAGACGTTGTGGATTCTTGTACTACCGAAGATGTTGTTTCGGA AGACATTGAAATGATTGAAATAAGTAATCCTTTAACTAAAGCTCCTCACC AAAATTTTATGAAAGAAATTGAGCTCATTGAAAACGCTGAAAGTGATATC GGAGACGATATTGAATTCAAGGTGACGTGTAAAACACAGACCGAACAGCA ATCTAAATCGCTTAATGAGGATAAAAAGTCTGTAGAATGTTCTCAACACG AGGATTCTGGATTGGGTGAAAAGCATATAGATTCAAAACTTGATGATTGT CTGGATGTTGAAAATAGAATCGACCTAGAAGAGAGTTCGTCAAAGAACGT TTCAGCCTTGGTCGAAAGTGACAGAGAATCTAACATTGTTGATTTGGGGG AAGATGAAAAATCTCTTCACAATATACAGTGTAGTACTGATAACAATTTT AAGTTGGATTTAAGAACAGTTGAAAAACAAAACGATATTGAGGTTACTGA GATCCTTGACAGTCCACCTGAAAACCAAAAAGTTGATAATGATGATGATT TTGCGAATGAAGAGCTATCTGGTAATAAGCCTGGTCAAGTAACACACAAG AATAGTGAAAATACTCAAGAGAGCGTGCATTTAAACAACGAAAAGAATGA CGAAGAATTTACACTTAAAAACAACGAGTCTTGTGTGGGAACTGGATTAA ACAACGGAAAAAGTGAAGAAATTTCAGATGCAAGTGACGTAAAACAGCTC AGATAGACGTTGGGAAGAATGATAATTTGGATGTTTCCTCAGAATCCAGC GCTTCACAATGTAAAAAAATGAGAAACATTTTCAAGCCACAGAAAGTAGC TGGCAAGGAAGAAACTAAATCTGACTTTTACAAAAGATGTTCACACACAT ACACATCAAAATATCCTTTCCTGACAAAGGTTCAAATCAAAGCTAAGGTC AATATTGCCTGGAAAAAGCTACAGAAGAAAAGAAAATCTTTAGAAGAGTA GAGATGCTGTTGTACCATCTCCTGAAATTCTAAACGATGAAGATTTGGAC AAATTGGAATGTAGTTCGAATTCCACTTCAGTGAAAGAAGTTATGGATAT TCCGGACACTCCAGAAAGTGGACTTTCCCCTAGCGGTAAAGAGAACATTT CTCCGGTCATTCTTGAAGGCGGAAAAATCCAAGACGTTGTGGATTCTTGT ACTACCGAAGATGTTGTTTCGGAAGACATTGAAATGATTGAAATAAGTAA TCCTTTAACTAAAGCTCCTCACCAAAATTTTATGAAAGAAATTGAGCTCA TTGAAAACGCTGAAAGTGATATCGGAGACGATATTGAATTCAAGGTGACG TGTAAAACACAGACCGAACAGCAATCTAAATCGCTTAATGAGGATAAAAA GTCTGTAGAATGTTCTCAACACGAGGATTCTGGATTGGGTGAAAAGCATA TAGATTCAAAACTTGATGATTGTCTGGATGTTGAAAATAGAATCGACCTA GAAGAGAGTTCGTCAAAGAACGTTTCAGCCTTGGTCGAAAGTGACAGAGA ATCTAACATTGTTGATTTGGGGGAAGATGAAAAATCTCTTCACAATATAC AGTGTAGTACTGATAACAATTTTAAGTTGGATTTAAGAACAGTTGAAAAA CAAAACGATATTGAGGTTACTGAGATCCTTGACAGTCCACCTGAAAACCA AAAAGTTGATAATGATGATGATTTTGCGAATGAAGAGCTATCTGGTAATA AGCCTGGTCAAGTAACACACAAGAATAGTGAAAATACTCAAGAGAGCGTG CATTTAAACAACGAAAAGAATGACGAAGAATTTACACTTAAAAACAACGA GTCTTGTGTGGGAACTGGATTAAACAACGGAAAAAGTGAAGAAATTTCAG ATGCAAGTGACGTAAAACAGCTCAGATAGACGTTGGGAAGAATGATAATT TGGATGTTTCCTCAGAATCCAGCGCTTCACAATGTAAAAAAATGAGAAAC ATTTTCAAGCCACAGAAAGTAGCTGGCAAGGAAGAAACTAAATCTGACTT TTACAAAAGATGTTCACACACATACACATCAAAATATCCTTTCCTGACAA AGGTTCAAATCAAAGCTAAGGTCAATATTGCCTGGAAAAAGCTACAGAAG AAAAGAAAATCTTTAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003966-exon-sc0000038-1575043694:863043..863226 | TCONS_00003966-exon-sc0000038-1575043694:863043..863226 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1575043694:861458..861519 | TCONS_00003966-exon-sc0000038-1575043694:861458..861519 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1575043694:858905..859831 | TCONS_00003966-exon-sc0000038-1575043694:858905..859831 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1510915933:863043..863226 | TCONS_00003966-exon-sc0000038-1510915933:863043..863226 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1510915933:861458..861519 | TCONS_00003966-exon-sc0000038-1510915933:861458..861519 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1510915933:858905..859831 | TCONS_00003966-exon-sc0000038-1510915933:858905..859831 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1491911889:863043..863226 | TCONS_00003966-exon-sc0000038-1491911889:863043..863226 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1491911889:861458..861519 | TCONS_00003966-exon-sc0000038-1491911889:861458..861519 | Clytia hemisphaerica | exon |
TCONS_00003966-exon-sc0000038-1491911889:858905..859831 | TCONS_00003966-exon-sc0000038-1491911889:858905..859831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000038 | supercontig | sc0000038:858905..863226 - |
Blast
The following BLAST results are available for this feature:
|