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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003956 ID=TCONS_00003956|Name=TCONS_00003956|organism=Clytia hemisphaerica|type=transcript|length=1308bp agatttttcaagaatttgccacatattttgtcactgattgtagtgtctag aatagaaaaaaacatttataaaacattattttttcagattaagactaaag taataattctaatCAAAAAGATGTTTACGAAATTGACAatcttgttttct ttgatggtgGTTGGCTGCCTGTGCCAAGAAAACACCACCGTATCCTTGAA CGCCACAACTGCAGCGCCCGCCCCGGTTACCACCACCACTACAACGACCA CCCTCGCACCGCCATCCGCCAATGAAACACAAAACGCAACAACagcacca ccaccaccaccaaaaACAGAAATACCCACCACTACAACGACCACGACAAC CACACAACTACCTGTtacaacaactacaacaacgaccactgaGATGCCAA CAACAACTACATCCTCTACTAAAGCTACAAAGAAACTAGCATGTGAAAGT GAGAGATGTCCACCGTACTCGTTATGCGAGAACACAGTCTGTTTAATGAA ATGTCCAAACATTACAAAGCCTTTCAACGCGTCTGAGCAAGTTTGTGGTG ATAATGGTGAAACCTATGATAGTTTTGATGCATTGAAAACAAACTCTTGT ACGATGAAGCAAATGATCACTAAAAAACATGATGGCGCTTGTGAAGACGA TAAAGAAGAAGAAGGTGGATCGCAATATATTGTGATCGTGGTCGTATTGG TGCTTGTCCTTATCATTATCATCGGGATCGCTGGTTACTGGATTTACAGC AAACGAAGAACAAATtccaaagatttgaaaaatggtgATAAATCTGGTGA TAACCTTCTGTAGAAATGTCTCATTCAACTAGAACCAACGTATATTCTCC AAACATTACACAAGAGTTTAAAACATTATAAAGACAAAGTGTGATGAAAT TAAAAGTGCCGATGGAACGCGTTGTTGTGGTTGGAAAAGCCCCTTGCATT GGTTAAGTCAAAGATAACGTGGATTAGCGACTATGCCAAAAATGTTTGAT ACTCGTTGCGTTATTGTTTGGTGGAAATGGATAGATAGGAGAAATTGATC TTATATTGAAATAACTTGGATCAAATATATGGTTGAATACTTCCGTCCGG TGAGAAAAATATTAACATTTTGAGATTGGTTTCaccaaattattttcttt agaaTGTACAATTATGATTCTGTTTCAAAAGCATACGGCAATTGACAGTT ATGGCaattttctttacaaaaaggtcttaaaatattgattttgtttgatt ttttgttgCAAGCAAGTCTTCTACCCGAAATTTTTCCGGCGAGAAGAAAA TACAAAGC Run BLAST on NCBI protein sequence of TCONS_00003956-protein >TCONS_00003956-protein ID=TCONS_00003956-protein|Name=TCONS_00003956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
RFFKNLPHILSLIVVSRIEKNIYKTLFFQIKTKVIILIKKMFTKLTILFS LMVVGCLCQENTTVSLNATTAAPAPVTTTTTTTTLAPPSANETQNATTAP PPPPKTEIPTTTTTTTTTQLPVTTTTTTTTEMPTTTTSSTKATKKLACES ERCPPYSLCENTVCLMKCPNITKPFNASEQVCGDNGETYDSFDALKTNSC TMKQMITKKHDGACEDDKEEEGGSQYIVIVVVLVLVLIIIIGIAGYWIYS KRRTNSKDLKNGDKSGDNLL Run BLAST on NCBI transcript from alignment at sc0000038:710260..714208- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003956 ID=TCONS_00003956|Name=TCONS_00003956|organism=Clytia hemisphaerica|type=transcript|length=3949bp|location=Sequence derived from alignment at sc0000038:710260..714208- (Clytia hemisphaerica) AGATTTTTCAAGAATTTGCCACATATTTTGTCACTGATTGTAGTGTCTAG
AATAGAAAAAAACATTTATAAAACATTATTTTTTCAGATTAAGACTAAAG
TAATAATTCTAATCAAAAAGATGTTTACGAAATTGACAATCTTGTTTTCT
TTGATGGTGGTTGGCTGCCTGTGCCAAGAAAACACCACCGGTAAGTGGTT
TAGTCCTTTTTCTAATTGTCTTTACATTCTTGTTCAGAGTCCCATTGGTT
TATGGGAAAAGAATTCTACCCTGCTGTTGATTTTTCGAGGTGTCGAACGT
TCTGGACATTCTATTCGAACTGCCTGAAGATTGTCACCCAAGTGGCATGA
AACTGCCAGTAACAGATTAGAAAAAAGATCTTTTTTTCCTTACTTACTAT
TCTAACTTACTGTAAACCTCTGTGGCATCCCCCTCATAAAAGATGTTAAG
TCACATTCATGAATGTCGTTTTTTAACTTGTAAAGATACTTACTCTTTTG
GAATCCACTTTTTGGAACAAAAATCATAATCCACTTGGCTTCTAAATCAG
TGGAATCAGTCGATGGGGAGGGGTTTGTAATGCAGAACGTAGTATGCAGA
GTCTTTTTAACTCTCACCTCTATAACTCGAATGTCTTGAGCTCGAACAAG
TTCCATGGTTCCTTCAATTAACAATGCCTTTTAAAACCTTAATCCATGAC
TCGAATTTTCCTTAACTCCAACAAATTTGTATTCCCGGTGCACGCTCGTG
TTATGGAGATGCCATTGTAATTGTTTCGGTATAAATTAATTTTGAATCCC
CCCTCACCTCCCTACTATGCTTAAAATCAAAAGTATTCTCTATTTCATTA
ATTTCCAGTATCCTTGAACGCCACAACTGCAGCGCCCGCCCCGGTTACCA
CCACCACTACAACGACCACCCTCGCACCGCCATCCGCCAATGAAACACAA
AACGCAACAACAGCACCACCACCACCACCAAAAACAGAAATACCCACCAC
TACAACGACCACGACAACCACACAACTACCTGTTACAACAACTACAACAA
CGACCACTGAGATGCCAACAACAACTACATCCTCTACTAAAGGTATGTTT
ATATTGTCTTTAAGGGAAATTATTTTGGGGAGTAACGAGAAAAATCAGAG
TTTCTAACTGTTAAACATAAAAATGTTGAATTATTTTAGAAATTGTAAAA
GAAATAGAATTTCTGTGACTTCTTACTTCAAAATTAGTTCCCTTTAAGGT
ATTCAAGTAAACGCTTTCAAGGGTTTGTTGTGGTTGAAAATAAGTTTAGC
ATTTTAGAATTTGGAGCCTTTTGTTATCCTTTTTGTTGATAAATTTCCCG
CCATCTCCAAAATTATTGGACAGTCTGTCAATGATCTTCATTTAAAGGCC
ATTTCACAGTCGAAATGAATCATGAGTAATCAGGACTGGTTGCGCTCTAG
TAACGAATTCCTGTTGGCTAAACGCAAAAATCTTCTAAAATTTTCAAAAC
TTTGGATCAATAGTAAGTCGTCATTAGTGCGCAGTGGTCCTGATTACCCA
TCAAGCTTTGCGACTATGAAATGGCCTATTCTTACCCTTACAATTCTCTT
TTTCGTACAGCTACAAAGAAACTAGCATGTGAAAGTGAGAGATGTCCACC
GTACTCGTTATGCGAGAACACAGTCTGTTTAATGAAATGTCCAAACATTA
CAAAGCCTTTCAACGCGTCTGAGCAAGTTTGTNGTAAGCCGTCATTAGTG
CGCAGTGGTCCTGATTACCCATCAAGCTTTGCGACTATGAAATGGCCTAT
TCTTACCCTTACAATTCTCTTTTTCGTACAGCTACAAAGAAACTAGCATG
TGAAAGTGAGAGATGTCCACCGTACTCGTTATGCGAGAACACAGTCTGTT
TAATGAAATGTCCAAACATTACAAAGCCTTTCAACGCGTCTGAGCAAGTT
TGTGGTGATAATGGTGAAACCTATGATAGTTTTGATGCATTGAAAACAAA
CTCTTGTACGATGAAGCAAATGATCACTAAAAAACATGATGGCGCTTGTG
AAGGTTTGTTCGCTTTTGTTTGTTATTTGTGTTTTTAAAGTCAGGTCTCT
CTCCCATACATTTATAACAACCTTTTTCAATAAAGACTGAGCAACGTAAT
TCATTTATTCTAGTCCAGAGAAAACTTTCTAATTTTCCCATGTACCTTCT
GACATGACATCATTAGACCCAGTAGCTGATTAGTTGTGAGTGACGTAATT
TGCGGGTACCAAAAAGTGACACAAAATCACTTGGTGACGAAATCTTTTAC
CCACGAATTTTTTATAGCTGACAAATTTTCCGACCGGCGATTTTTCTACC
GATAAAATTTAATATTATTTTCCCGACTCTTTTTTGTGTAGACGATAAAG
AAGAAGAAGGTGGATCGCAATATATTGTGATCGTGGTCGTATTGGTGCTT
GTCCTTATCATTATCATCGGGATCGCTGGTTACTGGATTTACAGCAAACG
AAGAACAAATGTAAGTTTTTCTTTCTGGTGAATGGATCCAGGGTTGTACT
CTGAGGTGTAACATTGCTGGGACTCAAAAAGTTTTGAAGTTTTCACAAGG
TCTTATTTGATTTGATTGGTCGTTAGCCTATAATAAAACAATTCTGTTAG
TTGTTCTCAAAAACGCTTTATCTCTATTACTTCAACACTGACCAATTAGT
GAAGTAACTTTTAAAAACTCTAGCTCATCTCAAAAGTTAAAGCGGTTTGT
TATTCTGGTAAACGGAGGGAGGGTTTTATTCTCACATTGCTTTTTAACCC
CAAAAACTCAAGCAGCTGGTGGAACCTGGTTAGAAGTCTGAGACCAGAAG
GAAGCAAGTGGCATAAGGGTCACCTAATTCTTTTAACTGTATTCGGGTAT
AGTATTAGGTTTTTTGAGCTACCTAAAACAACAGTTGTATGTTTTTTCTA
AGCGTTTCTAGTATGCAAGTCTTGTTCTAAACACCTGAAGCTGAAATATT
TTTGAACTAGGGGATACCTTATTACACGAATATTACTAGGCAAGTATTGA
ACGGCCTTGAAATTAACACGCAAAAAATTAACACGAATTTTATTTGTTTT
TTCAAGGAAACCACGGCTGGTTTTAATTAAGGGGATTTTTATCAACACGA
AATTTTTCAATTTGTGTTAATAAAATGACTAGTAATATTTGTGTAATAAA
GTATATATTCCTGGTGGTCACTTAAAACCTGTACTACGTCAAATTTTTTA
TATTTGCAAAATTTCACTCTTCCTTGTTGGATCAAATTTTTAACACAAAT
TGATTTGCGTATAGATAGGAGCCCTAACTGGTCACATAAACGGTGGATTT
TCTTTTCTACGTTGACTTTGCCTGCAGTAACGTCATGTTTTCTTTCTTTT
TCGCAGTCCAAAGATTTGAAAAATGGTGATAAATCTGGTGATAACCTTCT
GTAGAAATGTCTCATTCAACTAGAACCAACGTATATTCTCCAAACATTAC
ACAAGAGTTTAAAACATTATAAAGACAAAGTGTGATGAAATTAAAAGTGC
CGATGGAACGCGTTGTTGTGGTTGGAAAAGCCCCTTGCATTGGTTAAGTC
AAAGATAACGTGGATTAGCGACTATGCCAAAAATGTTTGATACTCGTTGC
GTTATTGTTTGGTGGAAATGGATAGATAGGAGAAATTGATCTTATATTGA
AATAACTTGGATCAAATATATGGTTGAATACTTCCGTCCGGTGAGAAAAA
TATTAACATTTTGAGATTGGTTTCACCAAATTATTTTCTTTAGAATGTAC
AATTATGATTCTGTTTCAAAAGCATACGGCAATTGACAGTTATGGCAATT
TTCTTTACAAAAAGGTCTTAAAATATTGATTTTGTTTGATTTTTTGTTGC
AAGCAAGTCTTCTACCCGAAATTTTTCCGGCGAGAAGAAAATACAAAGC Coding sequence (CDS) from alignment at sc0000038:710260..714208- >TCONS_00003956 ID=TCONS_00003956|Name=TCONS_00003956|organism=Clytia hemisphaerica|type=CDS|length=4065bp|location=Sequence derived from alignment at sc0000038:710260..714208- (Clytia hemisphaerica) TCCAAAGATTTGAAAAATGGTGATAAATCTGGTGATAACCTTCTGTAGAC GATAAAGAAGAAGAAGGTGGATCGCAATATATTGTGATCGTGGTCGTATT GGTGCTTGTCCTTATCATTATCATCGGGATCGCTGGTTACTGGATTTACA GCAAACGAAGAACAAATCTACAAAGAAACTAGCATGTGAAAGTGAGAGAT GTCCACCGTACTCGTTATGCGAGAACACAGTCTGTTTAATGAAATGTCCA AACATTACAAAGCCTTTCAACGCGTCTGAGCAAGTTTGTGGTGATAATGG TGAAACCTATGATAGTTTTGATGCATTGAAAACAAACTCTTGTACGATGA AGCAAATGATCACTAAAAAACATGATGGCGCTTGTGAAGTATCCTTGAAC GCCACAACTGCAGCGCCCGCCCCGGTTACCACCACCACTACAACGACCAC CCTCGCACCGCCATCCGCCAATGAAACACAAAACGCAACAACAGCACCAC CACCACCACCAAAAACAGAAATACCCACCACTACAACGACCACGACAACC ACACAACTACCTGTTACAACAACTACAACAACGACCACTGAGATGCCAAC AACAACTACATCCTCTACTAAAGAGATTTTTCAAGAATTTGCCACATATT TTGTCACTGATTGTAGTGTCTAGAATAGAAAAAAACATTTATAAAACATT ATTTTTTCAGATTAAGACTAAAGTAATAATTCTAATCAAAAAGATGTTTA CGAAATTGACAATCTTGTTTTCTTTGATGGTGGTTGGCTGCCTGTGCCAA GAAAACACCACCGTCCAAAGATTTGAAAAATGGTGATAAATCTGGTGATA ACCTTCTGTAGACGATAAAGAAGAAGAAGGTGGATCGCAATATATTGTGA TCGTGGTCGTATTGGTGCTTGTCCTTATCATTATCATCGGGATCGCTGGT TACTGGATTTACAGCAAACGAAGAACAAATCTACAAAGAAACTAGCATGT GAAAGTGAGAGATGTCCACCGTACTCGTTATGCGAGAACACAGTCTGTTT AATGAAATGTCCAAACATTACAAAGCCTTTCAACGCGTCTGAGCAAGTTT GTGGTGATAATGGTGAAACCTATGATAGTTTTGATGCATTGAAAACAAAC TCTTGTACGATGAAGCAAATGATCACTAAAAAACATGATGGCGCTTGTGA AGTATCCTTGAACGCCACAACTGCAGCGCCCGCCCCGGTTACCACCACCA CTACAACGACCACCCTCGCACCGCCATCCGCCAATGAAACACAAAACGCA ACAACAGCACCACCACCACCACCAAAAACAGAAATACCCACCACTACAAC GACCACGACAACCACACAACTACCTGTTACAACAACTACAACAACGACCA CTGAGATGCCAACAACAACTACATCCTCTACTAAAGAGATTTTTCAAGAA TTTGCCACATATTTTGTCACTGATTGTAGTGTCTAGAATAGAAAAAAACA TTTATAAAACATTATTTTTTCAGATTAAGACTAAAGTAATAATTCTAATC AAAAAGATGTTTACGAAATTGACAATCTTGTTTTCTTTGATGGTGGTTGG CTGCCTGTGCCAAGAAAACACCACCGTCCAAAGATTTGAAAAATGGTGAT AAATCTGGTGATAACCTTCTGTAGACGATAAAGAAGAAGAAGGTGGATCG CAATATATTGTGATCGTGGTCGTATTGGTGCTTGTCCTTATCATTATCAT CGGGATCGCTGGTTACTGGATTTACAGCAAACGAAGAACAAATCTACAAA GAAACTAGCATGTGAAAGTGAGAGATGTCCACCGTACTCGTTATGCGAGA ACACAGTCTGTTTAATGAAATGTCCAAACATTACAAAGCCTTTCAACGCG TCTGAGCAAGTTTGTGGTGATAATGGTGAAACCTATGATAGTTTTGATGC ATTGAAAACAAACTCTTGTACGATGAAGCAAATGATCACTAAAAAACATG ATGGCGCTTGTGAAGTATCCTTGAACGCCACAACTGCAGCGCCCGCCCCG GTTACCACCACCACTACAACGACCACCCTCGCACCGCCATCCGCCAATGA AACACAAAACGCAACAACAGCACCACCACCACCACCAAAAACAGAAATAC CCACCACTACAACGACCACGACAACCACACAACTACCTGTTACAACAACT ACAACAACGACCACTGAGATGCCAACAACAACTACATCCTCTACTAAAGA GATTTTTCAAGAATTTGCCACATATTTTGTCACTGATTGTAGTGTCTAGA ATAGAAAAAAACATTTATAAAACATTATTTTTTCAGATTAAGACTAAAGT AATAATTCTAATCAAAAAGATGTTTACGAAATTGACAATCTTGTTTTCTT TGATGGTGGTTGGCTGCCTGTGCCAAGAAAACACCACCGTCCAAAGATTT GAAAAATGGTGATAAATCTGGTGATAACCTTCTGTAGACGATAAAGAAGA AGAAGGTGGATCGCAATATATTGTGATCGTGGTCGTATTGGTGCTTGTCC TTATCATTATCATCGGGATCGCTGGTTACTGGATTTACAGCAAACGAAGA ACAAATCTACAAAGAAACTAGCATGTGAAAGTGAGAGATGTCCACCGTAC TCGTTATGCGAGAACACAGTCTGTTTAATGAAATGTCCAAACATTACAAA GCCTTTCAACGCGTCTGAGCAAGTTTGTGGTGATAATGGTGAAACCTATG ATAGTTTTGATGCATTGAAAACAAACTCTTGTACGATGAAGCAAATGATC ACTAAAAAACATGATGGCGCTTGTGAAGTATCCTTGAACGCCACAACTGC AGCGCCCGCCCCGGTTACCACCACCACTACAACGACCACCCTCGCACCGC CATCCGCCAATGAAACACAAAACGCAACAACAGCACCACCACCACCACCA AAAACAGAAATACCCACCACTACAACGACCACGACAACCACACAACTACC TGTTACAACAACTACAACAACGACCACTGAGATGCCAACAACAACTACAT CCTCTACTAAAGAGATTTTTCAAGAATTTGCCACATATTTTGTCACTGAT TGTAGTGTCTAGAATAGAAAAAAACATTTATAAAACATTATTTTTTCAGA TTAAGACTAAAGTAATAATTCTAATCAAAAAGATGTTTACGAAATTGACA ATCTTGTTTTCTTTGATGGTGGTTGGCTGCCTGTGCCAAGAAAACACCAC CGTCCAAAGATTTGAAAAATGGTGATAAATCTGGTGATAACCTTCTGTAG ACGATAAAGAAGAAGAAGGTGGATCGCAATATATTGTGATCGTGGTCGTA TTGGTGCTTGTCCTTATCATTATCATCGGGATCGCTGGTTACTGGATTTA CAGCAAACGAAGAACAAATCTACAAAGAAACTAGCATGTGAAAGTGAGAG ATGTCCACCGTACTCGTTATGCGAGAACACAGTCTGTTTAATGAAATGTC CAAACATTACAAAGCCTTTCAACGCGTCTGAGCAAGTTTGTGGTGATAAT GGTGAAACCTATGATAGTTTTGATGCATTGAAAACAAACTCTTGTACGAT GAAGCAAATGATCACTAAAAAACATGATGGCGCTTGTGAAGTATCCTTGA ACGCCACAACTGCAGCGCCCGCCCCGGTTACCACCACCACTACAACGACC ACCCTCGCACCGCCATCCGCCAATGAAACACAAAACGCAACAACAGCACC ACCACCACCACCAAAAACAGAAATACCCACCACTACAACGACCACGACAA CCACACAACTACCTGTTACAACAACTACAACAACGACCACTGAGATGCCA ACAACAACTACATCCTCTACTAAAGAGATTTTTCAAGAATTTGCCACATA TTTTGTCACTGATTGTAGTGTCTAGAATAGAAAAAAACATTTATAAAACA TTATTTTTTCAGATTAAGACTAAAGTAATAATTCTAATCAAAAAGATGTT TACGAAATTGACAATCTTGTTTTCTTTGATGGTGGTTGGCTGCCTGTGCC AAGAAAACACCACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003956-exon-sc0000038-1575043694:714019..714208 | TCONS_00003956-exon-sc0000038-1575043694:714019..714208 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1575043694:713117..713350 | TCONS_00003956-exon-sc0000038-1575043694:713117..713350 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1575043694:712156..712377 | TCONS_00003956-exon-sc0000038-1575043694:712156..712377 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1575043694:711699..711817 | TCONS_00003956-exon-sc0000038-1575043694:711699..711817 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1575043694:710260..710802 | TCONS_00003956-exon-sc0000038-1575043694:710260..710802 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1510915933:714019..714208 | TCONS_00003956-exon-sc0000038-1510915933:714019..714208 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1510915933:713117..713350 | TCONS_00003956-exon-sc0000038-1510915933:713117..713350 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1510915933:712156..712377 | TCONS_00003956-exon-sc0000038-1510915933:712156..712377 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1510915933:711699..711817 | TCONS_00003956-exon-sc0000038-1510915933:711699..711817 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1510915933:710260..710802 | TCONS_00003956-exon-sc0000038-1510915933:710260..710802 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1491911889:714019..714208 | TCONS_00003956-exon-sc0000038-1491911889:714019..714208 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1491911889:713117..713350 | TCONS_00003956-exon-sc0000038-1491911889:713117..713350 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1491911889:712156..712377 | TCONS_00003956-exon-sc0000038-1491911889:712156..712377 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1491911889:711699..711817 | TCONS_00003956-exon-sc0000038-1491911889:711699..711817 | Clytia hemisphaerica | exon |
TCONS_00003956-exon-sc0000038-1491911889:710260..710802 | TCONS_00003956-exon-sc0000038-1491911889:710260..710802 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000038 | supercontig | sc0000038:710260..714208 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR002350 | Kazal_dom |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|