TCONS_00003954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003954
Unique NameTCONS_00003954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003954 ID=TCONS_00003954|Name=TCONS_00003954|organism=Clytia hemisphaerica|type=transcript|length=769bp
gtAAACAATAAATACAATATACATACTATTTATTAACTAGAAATTAGAAT
AACAATTCTCATCACGATGAATGAGCAAAGatattttttgaATCCTGAAT
CAGTTAGCAAACATTTATTCTGTTCAATTTGTCAAGATGTCTACAATGAA
CCACAAAGAGCGCCATGTGGGCATAGCTTTTGCAAAGAGTGCATTTTTCG
ATGGTTGAGTCAGAGCAAGACATGCCCAGAAGATAGGAGAACGGTCACAA
AGAAAGATTTGCATTACGATTTTATCTTGGCGAACATTATAGGGGACCAA
ATGGTTGCTTGTCCTTTCCGATCAAGAGGCTGCGTACATGTCGGAAAGCT
TGAATTACTGGCAACTCATCGAAAGAATTGTACATTCAATCCGATTAATC
TACCGGACTTCATGAAAGAAGATGCGAAAAATTCCACTGTCAATTCAGCT
GGTATGTacacattttattttatacAAACTGGGAAtgacttttgttgttt
tttgttttttatcacAACTTTTTTTCACAGCTTTGGTGATATTTTCTACT
TTATTGTCATTCGGGCTTGAAGGTCGCCGGGTTATTTAAAAGCGGTACTA
CCTACTGCTTTCTTCACAAGGATTCAATTCAACTTCTAAGATTACATAAT
CTCTCAACAAAAAATCCCTTTCAATTTTAACGCTCGTATCAATAGGTAAT
TGCTTCTTCTTAGCCTCTTCCGTCCAATTAAGGAGACAAATGTTTTTCAA
ACCACTTGGTATCCATAAA
Run BLAST on NCBI

transcript from alignment at sc0000038:686441..693497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003954 ID=TCONS_00003954|Name=TCONS_00003954|organism=Clytia hemisphaerica|type=transcript|length=7057bp|location=Sequence derived from alignment at sc0000038:686441..693497- (Clytia hemisphaerica)
GTAAACAATAAATACAATATACATACTATTTATTAACTAGAAATTAGAAT
AACAATTCTCATCACGATGAATGAGCAAAGGTAAAGTCCTCCTGGTATTG
GGCTCTTCCAGAAAAAAATTGAATTTAGGGGGTGGAGGAGGATATGATTA
TGACATTTTTTTGGAAATTAACTACCCAGACATTGTGACTTTTGACCCCC
CAGACAGCATGTCTAACCCCTCGGACAAGCATTAGTTGACCCCATGGACA
GTCAAAATTACTCTCAAACAGAGCAAAACTAAAAAAGGAAGTTTAACCCC
GGACAAGGCAAGTTTTGTAGATTTTTACTACCCCTACTAAATCCTACACC
CTCATATATACAGACATTTTCTGGAGGAGCCCATTATTTGAATTTTTCTT
TCTATAGAACAAAATTAGAATCCTCTAAATCAGAACAGACAATTCTTTTT
ACACTTTGACTTTTTAAGGATGGTTATATAAATAGGGATAGAGGGTAATG
ATTATTTCGAACATTTAGCATTTACAGAAAGAAATGACTACTAGGCAATA
ATGTATTCAGATTTTCCGTGTTTTTCAGCCAGAAACAGCTATTTTGTCCA
GTTTTTGCGCTTTTTGAAGCTCAATATCTCGAGTTAGGTACTGAAATCAC
CTATACTTGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGTTTTCTCGAGCTAAAATTTTCATTAATTTTTAAC
CATATGATTTTTGCCTGAGACCGTCATATTTGTCCGAAAATCACACCAAA
GTGTCCGAAAAAAAATTGGAAACATAGTAATTTCGATTCCCCTACCCCTT
AGCTGTGCTTCTAACAAAACAGTCGAGCGATTTTACAAAATGCCCTCTAC
TATACCATCGAAAATGAAATATTTGATAAATGTTTTTAATTGAATGATCC
TGTATATTTTTTCAGATATTTTTTGAATCCTGAATCAGTTAGCAAACATT
TATTCTGTTCAATTTGTCAAGATGTCTACAATGAACCACAAAGAGCGCCA
TGTGGGCATAGCTTTTGCAAAGAGGTATGATAAATCTGATTGATGTTGGG
TCCATTAATTTTAGGGAGTGGTCAGAAAGTATCTACTAGGGTGGGTTTGC
AGGGGGGGGTCAAGATCCAGATACCAAACCCAGGGCCGGGGGGTGGTGTC
AATTTTTTTTTTCAAATTTCAAAAAGTCAAGTTGGTATTGATACCAAAAT
GAGGGGGTGGGGTCCCCTTTTTTTGAAAATTAGGGAATCTTTAAGTTGGT
ATCGATACCAAAATGAGAGGTTGGGTCCCCCTTTTTTTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTACATAATATAAGTGATTGA
TAAGAGGAATGTTCTTTGAATAAAAACATCCACAGATTTTGTTTAGCATC
CCTTGTATGCAGTATCCTATGCATATAACTCCTTGCATTTTTACTGATTG
CCAATTTAGGGGGGGGGTCCCCCTTTTTCAGAAAAATCGGGATTTTCAAG
TTTGTATCGATACCAATTTAGGGGGGTGGGTCCCCCCTTTTTCAGAAAAT
TGGAGTTTTCGAGTTGGTATTGATACCAATTTAGGGGGTGGTGGTGTCTA
CTACTTTCAAATCTCGAAAAGTCAGGTTTTTGGGCCCTGGGTTGGTATCC
TGGACCCTGACCCCCCCCCTGGGGTTTGAGGACATTTTCAAAAATACCAA
AAAAATTCACACCCTTCCCTTGATATACTCAAAACAATTTCAAGCCCCTA
CTAATATAGGCCACCTCTCAAAACGTATGATTTGAGGTTACAATAATAGC
AGCTGCTAGAGGCGTTCTGGCATCCTGGAATCCTCCACCCCCTCCCTAGT
AGATACTTTTTAACCACTCCCTTACCATCATCAAAGGGAGACTCAAATAT
CGATCTGTTTCGATTTTCAATATTTACTACTTTCTGTAAAAAAGTGGACC
CAAATAAAACAGTGGTACGATTAAGGAAGTTAATCGATTAATTTGATTTG
CATGGATCTCCATGTTTAAAAAAAGAGACAGTGAAGGCCAAATGCTTAAA
TTCTCTTCTTTGAAATTCTATGAAATGCAAAAAGGTAAAAAGGTGGCCCA
CATCAAGCATAGTTAGTTAGCTCTTATTTGCAAAACTTTCTTATGGCTAT
GGTTCATGGAAAGAATACATGTGAACGATACGAGTTTATACTAATAATGA
AAAAGTAAATCGTGTAATTGAATCGTGTATGAAAAAAAACTAAAAACTTT
TTATTTTGCCACTGTTGTTGATGTTCGATCTGTTATCTCGATTTTTCTTG
TTTCTTTGTTTTAGTGCATTTTTCGATGGTTGAGTCAGAGCAAGACATGC
CCAGAAGATAGGTATTTACTATTTTCTCCTGGTTCAGAGAAATCTTAGGA
AGAGCCTGGAAGAGCGTGAAAATAAAATGTTTCTTGGTTAGATACAGGAA
CCGTGAGCGTAAGGTTGAAATCTTTAAAAAAATTTAATCAACTCTTTTTT
TTATAAGCGTACGGGAAAATCGGGTCGATGCTCAATATGCTTGGGAAAAT
CTCATTTTCAGCCTTAATTTATGCTTTAAACACATGGATAATCATCAGTG
GTTTGGCTCAGTCAGATAGATAACTTTTCACTCAACTGCAACAGCAATTA
TTTATATACTTTTCAGCAAGAGCAGGCAACAGGGACTTTTCCAGAAATGA
TCTCGTGTTATTATGGTTTTTAATAAAATACTTTGTATGTGAGAAAACAA
AGACAGTAAAAACCGCTTTTTAATATTTCTATTATAGGAGAACGGTCACA
AAGAAAGATTTGCATTACGATTTTATCTTGGCGAACATTATAGGGGACCA
AATGGTTAGCCATTTTTAGGTTGCTTTTCCGAAAGACACTCTTTTTTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAACTAGAGTTGAACAAACTGAATCAAGTCTTAGCAGATC
TTAGATCTTTTTTAGTCGTGATAAAATTTTTCTGTACATAACGTTCATCA
TACAGGCTATGTAACAAAGACTTAAGGCGTGCCTAATACAATGAGTTTTT
TTATCTAGTCTAGTTTATCAACTAGCCCGGGGGGGGGCAGTGGGTTTCCC
AACTGACGGTATGTGCGTCGAAAAAATGGCTTTTAGAATCGCACCCTTAC
AGTGCAGAAAAAAATCGGTGAAATTCATACCCTTTTCAAATTTTAGACTC
TTTTAGAGCAAAAAAATCTAGATTTTCGAGCCAAAATTTGCAATTTTTCC
TAGATTTGCTGAAATTTCCACCCACCCAGTGCATTTATCAAAAGTCCACC
TTTACAGTGCATTTCTGATATTTTGAAAAACATACCCTTAACCGCCGCAC
ATACCGGTCGGTCAATTTGCCTGACTGTCCTCCCCCCGGGTCAACTAGTT
TTATGAACTCGATACATTTTGCCAATTTAGTTCCAGAAACTTTATTTACG
TTGTGTTAGAATGAGAAAAACTTGTTTTCATTTTCAGGAGTCTAAAGTGT
GGTACATAATATAAGTGATTGATAAGAGGAATGTTCTTTGANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAATCTCATTTTC
AGCCTTAATTTATGCTTTAAACACATGGATAATCATCAGTGGTTTGGCTC
AGTCAGATAGATAACTTTTCACTCAACTGCAACAGCAATTATTTATATAC
TTTTCAGCAAGAGCAGGCAACAGGGACTTTTCCAGAAATGATCTCGTGTT
ATTATGGTTTTTAATAAAATACTTTGTATTTGAGAAAACAAAGACAGTAA
AAACCGCTTTTTAATATTTCTATTATAGGAGAACGGTCACAAAGAAAGAT
TTGCATTACGATTTTATCTTGGCGAACATTATAGGGGACCAAATGGTTAG
CCATTTTTAGGTTGCTTTTCCGAAAGACACTCTTTTTTCTTTAAAGCATT
CGGAAAAATCAGATCGAGGCTCAATGTGCTTATTAGGAAAATCTCTTTTT
CAGCCTTAATTTATGTTTATTTACTTACTTAGGCTTTGATTTGTTGATTT
TCTTTGGGTTCATGAAAATTTCGAATTTTTAAGTCAAAACATTGATTCGG
TTCAAAGAATGAAAGTTTTCTTTTTGTGATTTGGCGCTGCAGGTGAAAAT
CTTTGGTCTAAGAAAGCTCAAACAGCTTTAAAAGTAACCTTAAAAAGGTC
AGCGTTTTAGAAAAGCTGCACGATTATTATTTCATTTCAACTTGGAGGTA
TGCTTGGCATTATGCTTATTTTTTACTGAATTTGAGCCTGAGTATGCTTA
TAAACGTTATGCTTATAAAAAAAGAGTATACACTTGCCAACCATGGTTTG
GGTTTATGAAAAAACTACCAAACTCTGGGTTGAAAAAACCATGAGGTTAA
TTGAATTTGATTTGTATTACATAAAAAATTGTATATTGTATTCATTGATG
ATAATTAATAAATCGAGGCTATATACAATGAGCAATGAGCAGTGTTTTAC
AGTACTCGATACATATGGAAGTAAGGAAGAAAAGACACTTTTTTCCGCTA
CTGTTAGTTTCATGCCACTTTGGTGTCGATCTGCCTGGATTCTTCCTTAC
TGCTATTGATAAAAATATACTTTTACATTACTACGATGTAGGTTGCTTGT
CCTTTCCGATCAAGAGGCTGCGTACATGTCGGAAAGCTTGAATTACTGGC
AACTCATCGAAAGAATTGTACATTCAATCCGATTAATCTACCGGACTTCA
TGAAAGAAGATGCGAAAAATTCCACTGTCAATTCAGCTGGTATGTACACA
TTTTATTTTATACAAACTGGGAATGACTTTTGTTGTTTTTTGTTTTTTAT
CACAACTTTTTTTCACAGCTTTGGTGATATTTTCTACTTTATTGTCATTC
GGGCTTGAAGGTCGCCGGGTTATTTAAAAGCGGTACTACCTACTGCTTTC
TTCACAAGGATTCAATTCAACTTCTAAGATTACATAATCTCTCAACAAAA
AATCCCTTTCAATTTTAACGCTCGTATCAATAGGTAATTGCTTCTTCTTA
GCCTCTTCCGTCCAATTAAGGAGACAAATGTTTTTCAAACCACTTGGTAT
CCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002209XLOC_002209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003954-exon-sc0000038-1575043694:693418..693497TCONS_00003954-exon-sc0000038-1575043694:693418..693497Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1575043694:692324..692432TCONS_00003954-exon-sc0000038-1575043694:692324..692432Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1575043694:690587..690633TCONS_00003954-exon-sc0000038-1575043694:690587..690633Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1575043694:687653..687719TCONS_00003954-exon-sc0000038-1575043694:687653..687719Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1575043694:686441..686906TCONS_00003954-exon-sc0000038-1575043694:686441..686906Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1510915933:693418..693497TCONS_00003954-exon-sc0000038-1510915933:693418..693497Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1510915933:692324..692432TCONS_00003954-exon-sc0000038-1510915933:692324..692432Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1510915933:690587..690633TCONS_00003954-exon-sc0000038-1510915933:690587..690633Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1510915933:687653..687719TCONS_00003954-exon-sc0000038-1510915933:687653..687719Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1510915933:686441..686906TCONS_00003954-exon-sc0000038-1510915933:686441..686906Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1491911889:693418..693497TCONS_00003954-exon-sc0000038-1491911889:693418..693497Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1491911889:692324..692432TCONS_00003954-exon-sc0000038-1491911889:692324..692432Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1491911889:690587..690633TCONS_00003954-exon-sc0000038-1491911889:690587..690633Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1491911889:687653..687719TCONS_00003954-exon-sc0000038-1491911889:687653..687719Clytia hemisphaericaexon
TCONS_00003954-exon-sc0000038-1491911889:686441..686906TCONS_00003954-exon-sc0000038-1491911889:686441..686906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:686441..693497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00481282	0.00352599	2.14335	0.507942	0	0	0	0	2.50246e-05	0	0.84459	0.00226614	2.49245	0	0.0317489	3.79653	1.88877	3.56043	4.74645	0	0.0633655	0.918127	3.81095e-05	1.83948	0	0	0.778399	5.29671e-07	2.4857	1.84803
Blast
[Close]
BLAST of TCONS_00003954 vs. Swiss-Prot (Human)
Match: RNF41 (E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 9.158e-16
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  103 VSKHLFCSICQDVYNEPQRAP-CGHSFCKECIFRWLSQSKTCPEDRRTVTKKDLH-YDFILANIIGDQMVACPFRSRGCVHVGKLELLATHRKNCTFNP 393
            V + L C IC  V  EP +AP C H+FC  CI +W SQ +TCP DR  VT   L     I+ N++    +AC     GC  V +L+ L +H  +C  NP
Sbjct:   12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNP 110
The following BLAST results are available for this feature:
BLAST of TCONS_00003954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF419.158e-1640.40E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens ... [more]
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