TCONS_00003940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003940
Unique NameTCONS_00003940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003940 ID=TCONS_00003940|Name=TCONS_00003940|organism=Clytia hemisphaerica|type=transcript|length=1116bp
TGTCAACTATGTCAGCAATAAACAACGAAGAGATTACAAGTATAAGGTTT
CTATaagTTTAATTGATACAAGATGGGTGATACACTACCATTGCATCAAA
CACTTTCcattttatcattgtttttactTGTGACGTCACTAAGCATTAGT
TCGTACACTCAAAcgcaatctgattggatgaaaacaAAGTTGATCCTCAA
GACTAAACCCTTTGGTGAATTCATTACACGGAAGTATTTCCCTAAAACAG
AAGAGGATGATTTGATACCAgatttcgaaaacaaaacccaaGAAGATAAA
GACTCGCAATGTGATTTCTTAGAAAACTTTAGAGAAACGTTACTAAAATA
CGACaatgggaaaatgaaaatcgaTGTTAATATTGGACTCAAAGATATGT
GTATGTTTATAATGTTCACTGGTTTTAAGACTTACAGTGAAATTCTACCA
CAATTTTATTCGTgtaaaaaattcgaatttttgaacAGTGTTGAAGAAGA
AACAGCTAATAAAGTTTGGGATGAGGATAGCTGGTCAAGGAAAATGTTTG
ACTCGACAATTGATGTGATCGATGAAGTCAGTGATCTAACAGTTGCTGGT
ATTTCGTTCACCATTGTTGCTGTTCTTACCGCGTTCTTCAAGACACCTCT
CATTCGAAACTTCCTTAAAAATCGAAACATATTTCAAGCGATGTGTGCTT
TCTGTACTTTTGGAGCATCTGTGGCGTATACATGGGCGATCGTCTTGTTT
CTCCATCAATTCGATCCAGCAGATATTTTAACCAAAGCACGAACAAGAGC
CATTGACAAAAAGAATGAAGCATCCGATTTTTGGAAGACATCGCGCGTCA
AGCAAAATAatggaaaaagtttttatttgttGGTTGGTGCAGATGCCATT
TTGGTTTTAGTTTTAATTATGAGTGTAGTAGAATACTTGAGTAGTCGCGT
GGTGAGAAGAGTTCCTGAGGAAGATATGCAAATGTCGAGAGAAAAACTTA
TGGCTTTTGATCATGGTAGTGATGATTCCATATTGTCTTGAATCAAAATG
CAATTCATCTTTTCGATCGTAGCCGCTAACTGCTGCATGGGCATTTTtct
gtccgttttaccaccc
Run BLAST on NCBI

protein sequence of TCONS_00003940-protein

>TCONS_00003940-protein ID=TCONS_00003940-protein|Name=TCONS_00003940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MGDTLPLHQTLSILSLFLLVTSLSISSYTQTQSDWMKTKLILKTKPFGEF
ITRKYFPKTEEDDLIPDFENKTQEDKDSQCDFLENFRETLLKYDNGKMKI
DVNIGLKDMCMFIMFTGFKTYSEILPQFYSCKKFEFLNSVEEETANKVWD
EDSWSRKMFDSTIDVIDEVSDLTVAGISFTIVAVLTAFFKTPLIRNFLKN
RNIFQAMCAFCTFGASVAYTWAIVLFLHQFDPADILTKARTRAIDKKNEA
SDFWKTSRVKQNNGKSFYLLVGADAILVLVLIMSVVEYLSSRVVRRVPEE
DMQMSREKLMAFDHGSDDSILS
Run BLAST on NCBI

transcript from alignment at sc0000038:120021..129479-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003940 ID=TCONS_00003940|Name=TCONS_00003940|organism=Clytia hemisphaerica|type=transcript|length=9459bp|location=Sequence derived from alignment at sc0000038:120021..129479- (Clytia hemisphaerica)
TGTCAACTATGTCAGCAATAAACAACGAAGAGATTACAAGTATAAGGTTT
CTATGTAGGTAGCTTTTTTATTTGCTTTGCATGAAAGTTATCTTTCCAAA
GTACAACATTATTGTATTGATATTGTATAAAAACAAAAATTATATAAGAA
CATAAGGCTTCGATGACCAAAATGTTAAGAACAAATTAAGCCTTTGCGGG
TAGGTAAAAATGATCGAAAAATGTTGAAATTAAGAACATGTTAAGAACTT
TTTTTGCCTAAAAACCCAAAAAAATTAAGAACATCCGAAAGCTTCAATAA
TTTTGGATATTCTTATAAAAAACGTGTAAAGAGGTTTTATAGTTTTTAAT
TGCTTTATAGTAACATGACCATGAGGTATAAGTTTTAACAGACATGTTGA
ATAATCTTTATACTCATAGCAAACGAATATCATTGAAGCTATTGAAGGGA
TCGCAATCTATATCAATTTTCGAAAGTAAAGTTACCTTATGAGCTTTTTA
GTAAAGGTTTGCTTGGCAATGATGGGAATCAAGCTTAATAGACGTTTTTT
ATAAGAACAAACTATATAAGAAGAAATAAGGCTTCAATGGCCAAAATGTT
AAAAACAAGTTAATAACATTTTTAGGCTTCGCGGACTCGAAAACAGCCAA
CTTCTTGGCTGGAGAAATGCATGCAAATAGGGGAAAATAAGAACCTAAGA
ACATGGTAAAAACATTTATAGGCTTAAAGCTCAAAAAGTTAAGAACATCC
AAAGGCTTCCAAATTTGTTTTCTTGTAGAGAAAGATAAGGCAAGCTTTGT
CAAAAGATTTATATTTAATCTTATAAAGATTTATGTTTAATCGGGGGAAC
TACCTTTTTTATGGGGTACTATTTCATAAGATACAAGGAGAGACAATTAT
CTGTTTGTGTTATATGTATTCATGTATAGACAGATAAAGTCGCAGTTAGA
GATTAGATATGTATGGTTAAGTTGTTCATTGGGATCAGTGAAATGGTTCC
TTGAAAATTTGACAGACGTTGAAAATTAGGATATAAGTGTCTGAAAGTTT
TCCTTTGCATGATATGTGTATGACTTTTAGTAGAATGATCTTTTTACATT
ATATTGATCATTGACATTTAGGAACACGGTGTTGAAGTGAATTTTCATTT
ATTTCTACACCTCTGTCTCATTTGCATCATGCATCAAGAGTTTTGTCTGA
TGATGAAATCCCTGTGTGAGATCCAATGGGCTTTTCCAATTAAGTCCGTT
ACAGGGGGTGGACGACGGCGGAATTCCGAGGCAAATTTTTTTTTTTGAAA
TTCCTGGATTTCCGAGTGCTTTTTTTATCTGAAAATTCCTGTCATCCACC
CCCTATATCAAATTTTTTCTGGAAGAGCTCAATGAAAAAGTCAGCAGTCA
AGTTAAATTGGATTAGGGATATATCATATTTCTAGTACAGTATATACTTA
ATATGATTTATAAAACAGGGGTGATAAAAAATGTCATCGATCCATGTAGA
TGAAATGACATCTAAAAAAATATGACGGTATGGCGTTATGGCGGTATTAG
GCTTCTGCTCATCCTCTAGCGAAAAAAGTTTCTTATAGAGGCTGCTTAAT
ACTCGGTAAATCTTCTTTCCAACAAAATGCCGCTTCTCGCCGAATTTCGG
CGAGAGGGCTATTTTTGCTGGCGAGTGCTTATGATGATTAATTTGCAAAG
GTACTCTACCTGCTACGAAGTAGCATATCGTTTGCTGTTCAAATTCAAGA
TGGCCGTCGAAGCGGGAAGTGGTTTTCGTCAATCTCGAGTACTTGTTTTT
GATTTGGGGTAGTTTGTTTAAGGCGAAAGAAGTTTTGTTAATACAATTAC
AAGTTTTAGAGTGTATAATATGTGTACCAAGAAAAGAATTACCGTCTAGA
ACATTTGTTATCAAGCTTATAATGTGGAATTTTGATTTGTTTTGATGGAC
ATTTTGTTCGTTTTGAACGAATGTAGAAAAGATACAGTAACAGGTCTTGA
CAGGTATGTGGTTATTTTAGAAGCTTATGATAGGGGAAAGATTGTTGTTG
TAAGTGTCCAATAGTAATATCATTTTATGGCTTTATCTCTTTCCAGAGCC
TTCTTCCTTTTTACTTTGTGTCTACTTAAAGTTGTTTGAAAAAGTGCAGC
AGCTTATTCTGTTATTCTTTGTTTTGTTAAACTTTGACAGGGACGGGAAG
AATGTTGGAATCAGTTTTATTGATGAAACCCAATATGTCTCATTTAAGTA
ACCTGAAGAGGGTTCTACTCTAGAAACAAATAGTTATAGTGAAATTTTAT
TTCAAAGTTTTTGAGAAATTCATATTCGTTGACTCAAAGCTCTAATATCA
AAACATTCGAAAATAAAAAAACATTCGAAAATAGAAAAAAATCATTCGAA
AATAAAAGAAACATTCAAAAAGGCGTGCCTGTGGCAAAATGGAATCCGTC
TGACACTGGAATGTCTTCACTTTGATTTCTTTTGTTTATCTTTTAACTCG
CATTCGAGTTCCAATAAAACTTAATAACTCGCCAAATAGCACGAGTCGGC
CACCATNATTCGAAAAGGCGTGCCTGTGGCAAAATGGAATCCGTCTGACA
CTGGAATGTCTTCACTTTGATTTCTTTTGTTTATCTTTTAACTCGCATTC
GAGTTCCAATAAAACTTAGCAACTCGCCAAATAGCACGAGTCGGCCACCA
TAAGAGCCACCGTAGCGGGAAACCAATCCATACACTATTAAGCAGACCTA
TAGGAAGTATAGGTCTGCGAATCAGACTATGGCGGTATACGGAGAAAAAA
TCGAAGAGTTTCGACTGGCAAAAAAGGCAAAAAAGCTGTTTGAGAATTTT
CTTCGGCTTTTGGCGTATTTCTTAGATTTGTCTTAGACTATAGCATAGTC
TAGGAAGATTGTTTCAAGTTTAATATTTTTGGTTTGAATGAGTACTTTGA
ACCTTTGATAGTCCTTGAAACAGTGTGTTTATGTTTTGTTGAATGCTAAG
AGGTTTTGTGTAATTTTGGTATCAGAATATAGATTTAATAATTTAATAGG
TTTCAATTTCATTTCACCCCCTTCTCAAAGACCGGTAGGATTCTTTCAGT
CAGTGGGGATAAAAATAACGGACTGAAACAAGATTGATATTGGGATTTCA
GTTGGGAAGTCAGAAAAATTCAGTGGGGATAGGAAAAATAGCATAATATT
TAGCAGTGATGATTTTTTAATTTGATTAGTTTCAGTTGGGACAAAAGTTT
GAGGATTAATTCCCACCGGGGACGATATTTTCGCTAGTTTTTCCAGTGGG
ATTGGGTCCCAGCCTGCTCCATTTGAGGTGTTGTTTTGTTTGAAGTTGTA
TGTAGTCTCTTGACCTTTGTGCTTATCTTATTATTTTTTGCAAATGCGGA
GAGGCTGGATAGACCTTTTCATAAATTACGTCACGAACTTTACTTCCCTC
GTATTCAAACAATTTCCTTGGTGATTATGTTCCTTGAAACATTAAATGAT
TTTTTATGAATAAGAAGTAGCCTTAATAAAATCTGCTGGGAGTTAATCAC
CATAGCAATAATTTCAAAACGAGGCAAGTGATGTTCGTAAGATCAGGACA
ATCTAGTATAGAACAGTAAGTTTCGTACGTTTAAGTTGATAGTCCTGATT
TTTTACAGCATTATTTTTTGGGTGAACATTAGAATTTTTTTTGGTTCAGA
TAATATTGACCTGGGACAGTTTTTCGTCAGAGACGAATTTGGTTATTTTC
GCTCGACATTCTACATACTTTCTAGTATATACTATATACTAGTTTCAAGC
CCGAAGGGCTAGAGGCGAAACTTTAACCCTTCTCAGGCAAGAGAAATTGA
AGCTACTTATTTCCCACCCAAAACGTGCATAGAACGCGCTGTAATCATGA
CTACGGATTGTATCTAGCGGTTCTTTTGTTTTGGAGGACTACATTCTTCG
AAATCTAGCGTTAGATTTTAGTTTCAATCCGGTGTTTGTGTAAAAACTAC
GCGCAGGCGTTCTAGATGGGAAATAAGTGGTTTCATTTCCCATCCAGGAG
TCTCGCCTCTAGCCCTTCGGGCTTGAAACTCAATGCTTTTGAGTCCTTGC
AAAAAAAGCTTTTTAGTCATAAATATCATCTTCCCAGAATAAATCGAGAA
TTGCATATTGTTGTTGTTATTTTGATGACGTTAATTGGCATATAAACATC
TTTTGATTACTTGATGACGAACTCATGATGAAATGGGATTCTGAGAAAAT
GCAATCACATCAGTATTAATCTGTAGTGGCAAAAATGGATCGTTTTCGCA
GGCCGTACATAAAATCAATTTGCTATGAATATTTACTAGCCATAACTTTC
ATTAAAGTGTCACCGCCGCAAAACGAACACATAGAGTTGAATTTGCTTTC
AAAAGGAATGTATGATTTTTGACTTCTCATCTGATCTGAGACAAAATTCA
GTCTTCAAATGCTAACAAATGTGTCAAGGAAGTGATTTACGGTTATACTT
TCAAAAGTAAAGCCCATTTTATTTTGGCGTGTATTTAGAGTGATATCCGT
GCATTGCCTTACACGCTTTTTTATAAGAACAATTTTATAAAAATACAATG
CTGAAATCTGGCCAATACCTAAGAACAATTTAAGAACAGTCTTACTGAGA
AGTACAGATTGGATTAGATACAAGAACATTTAAGTCTGAAAAACTCATAA
AATTCAGAGCAGCCCAGCCAGAGCCATAACTTATTGGTTTTCTATAAAAA
CCGTGTATTTAAAGACCCTGTGCTGTACGTACACGTTTGTTTAAGCTACA
CGGAGCGCTTAATAACTACTTGAGGTATAAAAAAGGGAATTTCCCAAAAT
AGGGAATTTTCTAGATTCATTAATTCTCTAGGGATAAGAAAAAGACAAAT
TTAATACCGGGCTATAACCGGTTAAGCATTTAATCGGTTAACCATTTAAC
CGGTTTAAGACGAGTGACAAACAATTTCGAAAAATTGTGAGCTATTTGTC
CAACTATCCTTAGGCGTGAAGCTATGAATGTCATCCTCGGTCGTTTTAGG
CTCCCTGCGGTGGCAATGATTGAGTTTTCCATGGATGTCCCCTCTTCACC
TTAAACTATTTTATTTTCTTACTAGCCTATCAAAGCTGTAAATTATATTA
TTATTTTGATTTTTCTGCTATTTACAGTTTGGCCTGCCTAAATGCTTGTA
AACAAATGGGTCGGCATAATAATGAATGTTACAGTGATTCCAATAACGTG
GAAAGTCTTTTAGAAGAGTTTGCGCGTTAGAATAACAAGAGTCTATCAAA
TTTCTTTAGACGTCTACTTGATACACTGATTTAGCAAATTCAAGGAAATT
ATTGTCAAATAATTAGCATAATCATAAGAGATTCAATTTTTCAAACCATA
AAAGGAAACCCATAGAGAAAGAAGCAGACATTTGCAACTTTCATAAAAAC
AAATACTACATAAGCCCATAAAGGCAAGACGATTTTTCATGCAAAACGAA
TTTCATTTTTTTAGAAGTTTAATTGATACAAGATGGGTGATACACTACCA
TTGCATCAAACACTTTCCATTTTATCATTGTTTTTACTTGTGACGTCACT
AAGCATTAGTTCGTACACTCAAACGCAATCTGATTGGATGAAAACAAAGT
TGATCCTCAAGACTAAACCCTTTGGTAAGTTTGCTTTTTCTGAGTTTTTG
CCGTGCCAAGGTTATAGCACTCTGTACCAGAATGTGTCTCACGTTTATCG
CTTCATAGTACACTCTATGCGCATTGTCTGTTTGATAAAAAAATTCCCGT
ACGGAGACCTCTGTGATGAAGTATGATTTATAAATAGCAACACAACTCTT
ATCGTCTCTCCTCTCTCTTCCACACTCCATCTCAGCGATCGGTTTGAAAA
ATCTCAGATGAGAAAAGACAATGACAACAGACCCTCTAAGGTAATGAATT
TTGAAATTAGCCGTAGAAACTGGGTATGTGTGCAGACAAAGGTTATAGCA
AAAGTAAGTAAGTTTACAATCGTAGTCGAGGGCGACTCGAAGGCTCCTTT
TTCTCTAACTGTCTATCCGAAGGTAGGGAAGTGTACCGTCATGCTACGAT
CGCTATAGCAAAAAGCAAAAGAGGAGTCTCCGTAGCTCGAACACATACGC
GGATGCCCGGTGTTACATTGAGTGGTCTAGGAGTCTTCTCGTTAGAACCG
TCTTAAGTTGTAGTTTATACTACCTGCCAACTTGCAAGACACTTACAAAC
ATTTTCTCGGATCAAGTGCGTTAGCCCAGCGTTAACCACTAGTGAGTAAG
GCTAGCGCACTCATGATGTTTTTGGAATTGATACCTAGGACAGTCACTGA
CAGGCTTCTTACGAATCTCGACAGTCAAGATTGATATCCACTAAAATTGA
CACATACGCGATAGAATTTCTATTATTGGTCTTCAGAGGTTGATATGTTC
TTTGAAAACTCAACCTCTGATATTCAAGGTAATGTATCTTTAGAAATTAT
TTCAATGGGGGCAAAGAATTAGGTTATTCGGGGGGATATTACTCTTTGGG
ACTTAGGGACATGCCATTGAGGCTCAAAAATTTGCCCCACTTCCTCGTTT
GACGTATTTCGAAAACTTTCGCTGTTTCTTTTCAAAACAAAGGACCTGAA
TAGGTTAAACATTGCCTTAAAAGTTATTACCAAAGCTTAACCCTTTGTGC
GCACCGTTTTTTTGAAAACATTGAAATTTTTCTAAATTCTTTTCTTGAAA
CTCAAAACTTTAAAGTGCCATAAAAGCTTGTAGCTATTGATTTAGAAGAT
GGTTTTGGTAGCATTGGAAAGCTATTTTTATATACTCTTTTTAAAAGCAT
TTGGTTTACAACTTTCAATAGAAGTGGTCAGGAGCTATGGCCTCAAGTCT
GAGACTCTGTATTTTGGCTTATTTTGGACGCATATACGCGTCCCTCGTGG
TCTAAGGGTTAAGACGAATACTCGTGTAATAATTTCAAGATTTCTTATTT
TACAGGTGAATTCATTACACGGAAGTATTTCCCTAAAACAGAAGAGGATG
ATTTGATACCAGATTTCGAAAACAAAACCCAAGAAGATAAAGACTCGCAA
TGTGATTTCTTAGAAAACTTTAGAGAAACGTTACTAAAATACGACAATGG
GAAAATGAAAATCGATGTTAATATTGGACTCAAAGATATGTGTATGTTTA
TAATGTTCACTGGTTTTAAGACTTACAGTGAAATTCTACCACAATTTTAT
TCGTGTAAAAAATTCGAATTTTTGAACAGTGTTGAAGAAGAAACAGCTAA
TAAAGTTTGGGATGAGGATAGCTGGTCAAGGAAAATGTTTGACTCGACAA
TTGATGGTAAGTCAACTGACATACAGACACCCCCCGCTCACAGACCCACT
GGGACCCCTTCCCACTGGAAAAANTTGATTCGACAATTGATGGTAAGTCA
ACTGACATACAGACACCCCCCGCTCACAGACTCACTGGGACCCCTTCCCA
CTTGAAAAATTTGGCCAAAATATCGTCCCGGTGGAAAATAATCCTCCAAT
TTTTGTCCCAACTGAAAATAATCAGAAGCATAAGCCATAATCCTCACTGT
AAGATATTATGTTATTTTGTCCATTCTCCACTGAATTTTCTGATTTGAAA
ACAAAAGAATTGAAATCCCCAGTCATTAAAAATAGAAAAATTGAATTTTC
AAAAAACTCGAATGTATAAGGATTATAAGGTTAGTTAGTAAAAATCTTTA
TCTTTATAATTTCCAAAGCCTTGAGTTTATCCACTTAACATTATCTTTGC
AACCATATTAAAGCCCAGCTGGCACACAACGTTGTTTCAACGTTCATCTA
ACGTTATATGGACGTTGTGAACGTTAGATAAACGTTGAAACAACGTTGTG
TGCCAGCTGGGAGGTTTTATATTTTAGCCTCCTAAGATTACATTGGTCTT
CAATTTGTTCTCAGGAGTTATGAAGAATATGAGCTTCTTTGTTCCTCTAA
ACTGTGGTCACGAAACCTATTTCATTCCTAAAAATTATTGGGTTTTCTTT
GTAAATCATTGATTCTGAATGAGGAAAATTGTTAATTTTTAGTGATCGAT
GAAGTCAGTGATCTAACAGTTGCTGGTATTTCGTTCACCATTGTTGCTGT
TCTTACCGCGTTCTTCAAGACACCTCTCATTCGAAACTTCCTTAAAAATC
GAAACATATTTCAAGCGATGTGTGCTTTCTGTACTTTTGGAGCATGTAAG
TATTTGTACATGGGTGGCCCAAAAAAAAACTTTACATGAACTTGATTGTT
TATAAATTGACGTTGCTTTGTGGTGTGTTTGAAACTTTACACAAGAAAAA
AGAATTCTATTTCGTATATCTTGTCAAAATTTTAGGTCAAAATATTTGAT
TAATCTCGTTTTATAAAGGTATACTATATAGGCCATTTATCACAGTTGCA
AAGCGTAATGGGTAATCAGGACCACTGCGCGCTAATGACAACTTACTATT
ATAGTCTATTATTATAAGATTTTTGCGTCTGACCAACGGGAAACTGTTAT
TGGGGCGCAATCAGTCCTGATTACCCATGATCCATTTCGACTGTAACATG
GCCTATATATACAACCCTATCCATTGAGTTTGAAGCTCCAAAGGGGCTAA
AAGGGAATCTTCAACCTATATCAAGCAAGAAAAAGTGAAACCTTAAGATT
TGCCCAGCACTAAGAAATTGTGTGTGAAAACCACTTTGGTCATGTGTCTT
GGATGGGAAATAAGTGGCTTTTTCATGATTCTAATAAGGTTCAAAGGAAA
GGATTGCATCACCTATCAGTAAAATAAAAAAATGCTACTACAAGTTGCCC
TAAGCACGAGAGATTGCCCTAATGTGACAAAGTCATTTTGTATTGTGTTT
TTTACTAGCGACCCGAACCTTACTGAAAACCAGTTGCTTTAGCGAAGTTC
TGCTGAGCTCATGAGTCTTAAACTCGTAACTGGAATCTTTGGTTTGAATC
TTGTCAGCGAATCATCTTTATGTATAGTTTTTGAATTCATTTAATGATAT
TTCTTTTCCAGCTGTGGCGTATACATGGGCGATCGTCTTGTTTCTCCATC
AATTCGATCCAGCAGATATTTTAACCAAAGCACGAACAAGAGCCATTGAC
AAAAAGAATGAAGCATCCGATTTTTGGAAGACATCGCGCGTCAAGCAAAA
TAATGGAAAAAGTTTTTATTTGTTGGTTGGTGCAGATGCCATTTTGGTTT
TAGTTTTAATTATGAGTGTAGTAGAATACTTGAGTAGTCGCGTGGTGAGA
AGAGTTCCTGAGGAAGATATGCAAATGTCGAGAGAAAAACTTATGGCTTT
TGATCATGGTAGTGATGATTCCATATTGTCTTGAATCAAAATGCAATTCA
TCTTTTCGATCGTAGCCGCTAACTGCTGCATGGGCATTTTTCTGTCCGTT
TTACCACCC

Coding sequence (CDS) from alignment at sc0000038:120021..129479-

>TCONS_00003940 ID=TCONS_00003940|Name=TCONS_00003940|organism=Clytia hemisphaerica|type=CDS|length=3876bp|location=Sequence derived from alignment at sc0000038:120021..129479- (Clytia hemisphaerica)
CTGTGGCGTATACATGGGCGATCGTCTTGTTTCTCCATCAATTCGATCCA
GCAGATATTTTAACCAAAGCACGAACAAGAGCCATTGACAAAAAGAATGA
AGCATCCGATTTTTGGAAGACATCGCGCGTCAAGCAAAATAATGGAAAAA
GTTTTTATTTGTTGGTTGGTGCAGATGCCATTTTGGTTTTAGTTTTAATT
ATGAGTGTAGTAGAATACTTGAGTAGTCGCGTGGTGAGAAGAGTTCCTGA
GGAAGATATGCAAATGTCGAGAGAAAAACTTATGGCTTTTGATCATGGTA
GTGATGATTCCATATTGTCTTGATGATCGATGAAGTCAGTGATCTAACAG
TTGCTGGTATTTCGTTCACCATTGTTGCTGTTCTTACCGCGTTCTTCAAG
ACACCTCTCATTCGAAACTTCCTTAAAAATCGAAACATATTTCAAGCGAT
GTGTGCTTTCTGTACTTTTGGAGCATGTGAATTCATTACACGGAAGTATT
TCCCTAAAACAGAAGAGGATGATTTGATACCAGATTTCGAAAACAAAACC
CAAGAAGATAAAGACTCGCAATGTGATTTCTTAGAAAACTTTAGAGAAAC
GTTACTAAAATACGACAATGGGAAAATGAAAATCGATGTTAATATTGGAC
TCAAAGATATGTGTATGTTTATAATGTTCACTGGTTTTAAGACTTACAGT
GAAATTCTACCACAATTTTATTCGTGTAAAAAATTCGAATTTTTGAACAG
TGTTGAAGAAGAAACAGCTAATAAAGTTTGGGATGAGGATAGCTGGTCAA
GGAAAATGTTTGACTCGACAATTGATGATGGGTGATACACTACCATTGCA
TCAAACACTTTCCATTTTATCATTGTTTTTACTTGTGACGTCACTAAGCA
TTAGTTCGTACACTCAAACGCAATCTGATTGGATGAAAACAAAGTTGATC
CTCAAGACTAAACCCTTTGCTGTGGCGTATACATGGGCGATCGTCTTGTT
TCTCCATCAATTCGATCCAGCAGATATTTTAACCAAAGCACGAACAAGAG
CCATTGACAAAAAGAATGAAGCATCCGATTTTTGGAAGACATCGCGCGTC
AAGCAAAATAATGGAAAAAGTTTTTATTTGTTGGTTGGTGCAGATGCCAT
TTTGGTTTTAGTTTTAATTATGAGTGTAGTAGAATACTTGAGTAGTCGCG
TGGTGAGAAGAGTTCCTGAGGAAGATATGCAAATGTCGAGAGAAAAACTT
ATGGCTTTTGATCATGGTAGTGATGATTCCATATTGTCTTGATGATCGAT
GAAGTCAGTGATCTAACAGTTGCTGGTATTTCGTTCACCATTGTTGCTGT
TCTTACCGCGTTCTTCAAGACACCTCTCATTCGAAACTTCCTTAAAAATC
GAAACATATTTCAAGCGATGTGTGCTTTCTGTACTTTTGGAGCATGTGAA
TTCATTACACGGAAGTATTTCCCTAAAACAGAAGAGGATGATTTGATACC
AGATTTCGAAAACAAAACCCAAGAAGATAAAGACTCGCAATGTGATTTCT
TAGAAAACTTTAGAGAAACGTTACTAAAATACGACAATGGGAAAATGAAA
ATCGATGTTAATATTGGACTCAAAGATATGTGTATGTTTATAATGTTCAC
TGGTTTTAAGACTTACAGTGAAATTCTACCACAATTTTATTCGTGTAAAA
AATTCGAATTTTTGAACAGTGTTGAAGAAGAAACAGCTAATAAAGTTTGG
GATGAGGATAGCTGGTCAAGGAAAATGTTTGACTCGACAATTGATGATGG
GTGATACACTACCATTGCATCAAACACTTTCCATTTTATCATTGTTTTTA
CTTGTGACGTCACTAAGCATTAGTTCGTACACTCAAACGCAATCTGATTG
GATGAAAACAAAGTTGATCCTCAAGACTAAACCCTTTGCTGTGGCGTATA
CATGGGCGATCGTCTTGTTTCTCCATCAATTCGATCCAGCAGATATTTTA
ACCAAAGCACGAACAAGAGCCATTGACAAAAAGAATGAAGCATCCGATTT
TTGGAAGACATCGCGCGTCAAGCAAAATAATGGAAAAAGTTTTTATTTGT
TGGTTGGTGCAGATGCCATTTTGGTTTTAGTTTTAATTATGAGTGTAGTA
GAATACTTGAGTAGTCGCGTGGTGAGAAGAGTTCCTGAGGAAGATATGCA
AATGTCGAGAGAAAAACTTATGGCTTTTGATCATGGTAGTGATGATTCCA
TATTGTCTTGATGATCGATGAAGTCAGTGATCTAACAGTTGCTGGTATTT
CGTTCACCATTGTTGCTGTTCTTACCGCGTTCTTCAAGACACCTCTCATT
CGAAACTTCCTTAAAAATCGAAACATATTTCAAGCGATGTGTGCTTTCTG
TACTTTTGGAGCATGTGAATTCATTACACGGAAGTATTTCCCTAAAACAG
AAGAGGATGATTTGATACCAGATTTCGAAAACAAAACCCAAGAAGATAAA
GACTCGCAATGTGATTTCTTAGAAAACTTTAGAGAAACGTTACTAAAATA
CGACAATGGGAAAATGAAAATCGATGTTAATATTGGACTCAAAGATATGT
GTATGTTTATAATGTTCACTGGTTTTAAGACTTACAGTGAAATTCTACCA
CAATTTTATTCGTGTAAAAAATTCGAATTTTTGAACAGTGTTGAAGAAGA
AACAGCTAATAAAGTTTGGGATGAGGATAGCTGGTCAAGGAAAATGTTTG
ACTCGACAATTGATGATGGGTGATACACTACCATTGCATCAAACACTTTC
CATTTTATCATTGTTTTTACTTGTGACGTCACTAAGCATTAGTTCGTACA
CTCAAACGCAATCTGATTGGATGAAAACAAAGTTGATCCTCAAGACTAAA
CCCTTTGCTGTGGCGTATACATGGGCGATCGTCTTGTTTCTCCATCAATT
CGATCCAGCAGATATTTTAACCAAAGCACGAACAAGAGCCATTGACAAAA
AGAATGAAGCATCCGATTTTTGGAAGACATCGCGCGTCAAGCAAAATAAT
GGAAAAAGTTTTTATTTGTTGGTTGGTGCAGATGCCATTTTGGTTTTAGT
TTTAATTATGAGTGTAGTAGAATACTTGAGTAGTCGCGTGGTGAGAAGAG
TTCCTGAGGAAGATATGCAAATGTCGAGAGAAAAACTTATGGCTTTTGAT
CATGGTAGTGATGATTCCATATTGTCTTGATGATCGATGAAGTCAGTGAT
CTAACAGTTGCTGGTATTTCGTTCACCATTGTTGCTGTTCTTACCGCGTT
CTTCAAGACACCTCTCATTCGAAACTTCCTTAAAAATCGAAACATATTTC
AAGCGATGTGTGCTTTCTGTACTTTTGGAGCATGTGAATTCATTACACGG
AAGTATTTCCCTAAAACAGAAGAGGATGATTTGATACCAGATTTCGAAAA
CAAAACCCAAGAAGATAAAGACTCGCAATGTGATTTCTTAGAAAACTTTA
GAGAAACGTTACTAAAATACGACAATGGGAAAATGAAAATCGATGTTAAT
ATTGGACTCAAAGATATGTGTATGTTTATAATGTTCACTGGTTTTAAGAC
TTACAGTGAAATTCTACCACAATTTTATTCGTGTAAAAAATTCGAATTTT
TGAACAGTGTTGAAGAAGAAACAGCTAATAAAGTTTGGGATGAGGATAGC
TGGTCAAGGAAAATGTTTGACTCGACAATTGATGATGGGTGATACACTAC
CATTGCATCAAACACTTTCCATTTTATCATTGTTTTTACTTGTGACGTCA
CTAAGCATTAGTTCGTACACTCAAACGCAATCTGATTGGATGAAAACAAA
GTTGATCCTCAAGACTAAACCCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002202XLOC_002202Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003940-exon-sc0000038-1575043694:129426..129479TCONS_00003940-exon-sc0000038-1575043694:129426..129479Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1575043694:123806..123965TCONS_00003940-exon-sc0000038-1575043694:123806..123965Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1575043694:122124..122474TCONS_00003940-exon-sc0000038-1575043694:122124..122474Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1575043694:121235..121387TCONS_00003940-exon-sc0000038-1575043694:121235..121387Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1575043694:120021..120418TCONS_00003940-exon-sc0000038-1575043694:120021..120418Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1510915933:129426..129479TCONS_00003940-exon-sc0000038-1510915933:129426..129479Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1510915933:123806..123965TCONS_00003940-exon-sc0000038-1510915933:123806..123965Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1510915933:122124..122474TCONS_00003940-exon-sc0000038-1510915933:122124..122474Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1510915933:121235..121387TCONS_00003940-exon-sc0000038-1510915933:121235..121387Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1510915933:120021..120418TCONS_00003940-exon-sc0000038-1510915933:120021..120418Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1491911889:129426..129479TCONS_00003940-exon-sc0000038-1491911889:129426..129479Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1491911889:123806..123965TCONS_00003940-exon-sc0000038-1491911889:123806..123965Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1491911889:122124..122474TCONS_00003940-exon-sc0000038-1491911889:122124..122474Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1491911889:121235..121387TCONS_00003940-exon-sc0000038-1491911889:121235..121387Clytia hemisphaericaexon
TCONS_00003940-exon-sc0000038-1491911889:120021..120418TCONS_00003940-exon-sc0000038-1491911889:120021..120418Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003940-proteinTCONS_00003940-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:120021..129479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.821425	0.724731	1.10721	1.12657	3.21771	1.66733	3.46995	3.38977	3.82358	12.9018	7.01437	1.51094	23.4651	9.32062	8.79558	15.2311	9.24961	6.44076	27.6927	26.9334	5.18121	5.31268	11.7056	15.1273	20.4523	21.4016	48.057	46.6513	29.392	18.3125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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