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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003916 ID=TCONS_00003916|Name=TCONS_00003916|organism=Clytia hemisphaerica|type=transcript|length=2168bpRun BLAST on NCBI protein sequence of TCONS_00003916-protein >TCONS_00003916-protein ID=TCONS_00003916-protein|Name=TCONS_00003916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp MAQLWLHFYEFMFLFCLCFHGLFLLANGACVPGCRCSNWDLNTLKCTSEVRun BLAST on NCBI transcript from alignment at sc0000038:600692..626850+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003916 ID=TCONS_00003916|Name=TCONS_00003916|organism=Clytia hemisphaerica|type=transcript|length=26159bp|location=Sequence derived from alignment at sc0000038:600692..626850+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000038:600692..626850+ >TCONS_00003916 ID=TCONS_00003916|Name=TCONS_00003916|organism=Clytia hemisphaerica|type=CDS|length=22005bp|location=Sequence derived from alignment at sc0000038:600692..626850+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003916 vs. Swiss-Prot (Human)
Match: IGS10 (Immunoglobulin superfamily member 10 OS=Homo sapiens GN=IGSF10 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 9.254e-19 Identity = 68/239 (28.45%), Postives = 116/239 (48.54%), Query Frame = 2
Query: 578 LPSNLSSIVPDLQKLDLSSNKMKSLPDKTFAGLKKLNMLSLADNELTELGQNIFEGNENTGKLLILLYGNRISKIHPTAFNGLQADLTLRLQQNLLKELHKDTFAGIRNVHHINLGDNVLERIDPGLFRDQHHLFLLDLDGNKLTDLHIDTFKYTESLETLNLEGNLLATIPDDLFRNNIALKEINLRDNKFTELPINL--HLPEKVETISFSGNPLLCDCPLKKLYQNADYVSKYKDL 1288
L S SI P++++++L N + L + F+GL KL +L +L+ N I I F+ LQA L++ N +++L KDTF G+R++ +++ N +E I+P +F + L L+ L+GN+LT LH DTF L+ + +K + L DN T LP + ++P+ ++++ GNP CDC LK L +D++ + D+
Sbjct: 48 LTSIPDSIPPNVERINLGYNSLVRLMETDFSGLTKLELL--------------------------MLHSNGIHTIPDKTFSDLQALQVLKMSYNKVRKLQKDTFYGLRSLTRLHMDHNNIEFINPEVFYGLNFLRLVHLEGNQLTKLHPDTFVSLSYLQIFKIS----------------FIKFLYLSDNFLTSLPQEMVSYMPD-LDSLYLHGNPWTCDCHLKWL---SDWIQEKPDV 240 The following BLAST results are available for this feature:
BLAST of TCONS_00003916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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