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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003914 ID=TCONS_00003914|Name=TCONS_00003914|organism=Clytia hemisphaerica|type=transcript|length=4218bpRun BLAST on NCBI transcript from alignment at sc0000038:600692..624238+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003914 ID=TCONS_00003914|Name=TCONS_00003914|organism=Clytia hemisphaerica|type=transcript|length=23547bp|location=Sequence derived from alignment at sc0000038:600692..624238+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003914 vs. Swiss-Prot (Human)
Match: CHAD (Chondroadherin OS=Homo sapiens GN=CHAD PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 2.310e-18 Identity = 77/315 (24.44%), Postives = 136/315 (43.17%), Query Frame = 2
Query: 440 CVPGCRCSNWDLNTLKCTSEVGLTEFPLDLDPTIQFLRFPGNKIEELPSNLSSIVPDLQKLDLSSNKMKSLPDKTFAGLKKLNMLSLADNELTELGQNIFEGNENTGKLLILLYGNRISKIHPTAFNGLQADLTLRLQQNLLKELHKDTFAGIRNVHHINLGDNVLERIDPGLFRDQHHLFLLDLDGNKLTDLHIDTFKYTESLETLNLEGNLLATIPDDLFRN-------------------------NIALKEINLRDNKFTELPINLHLPEKVETISFSGNPLLCDCPLKKLYQNADYVSKYKDLDDAICAN 1309
C C C + DL + C +VGL + P + + L N L +N +P+L L L +++ + F GLK+L L L+ N++ L F+ + T + L N+++++ + L L+L N ++EL F G +++ + L +N L + PG D +L +D N+L+ +E L L N L +IPD+ F++ LK ++L +N+ +LP N + +ET++ + NP C C L+ L + ++ DA CA+
Sbjct: 23 CPQNCHCHS-DLQHVIC-DKVGLQKIP-KVSEKTKLLNLQRNNFPVLAANSFRAMPNLVSLHLQHCQIREVAAGAFRGLKQLIYLYLSHNDIRVLRAGAFD--DLTELTYLYLDHNKVTELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENALSSLQPGALDDVENLAKFHVDRNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDGAFLGVTTLKHVHLENNRLNQLPSNFPF-DSLETLALTNNPWKCTCQLRGLRR---WLEAKASRPDATCAS 328 The following BLAST results are available for this feature:
BLAST of TCONS_00003914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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