TCONS_00003913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003913
Unique NameTCONS_00003913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003913 ID=TCONS_00003913|Name=TCONS_00003913|organism=Clytia hemisphaerica|type=transcript|length=801bp
TGGAAAGATATTTTGAAGAAgcaatgattttcttttcaaggACGGACGTG
GTTATAAGTGTTTTCACCACGTTGATTGTGTCATTTCTGACGTTGCGTTA
CTTGTCCAGTAAAGAGGGGATCGAAATCCAAGAACTGGAATATAAAATAC
GAGTAAGAAANGCGTTACTTGTCCAGTAAAGAGGGGATCGAAATCCAAGA
ACTAGAATATAAAATACGAGTAAGAAAGgATGGTGAaactgaagaaaatg
aagataaagACCAAGAAAATAAAGAGAAAGAGGAAGGCTTAGGGGATAAT
GATGACGATATAGAGGAGATCAAAAGAAATTCGGATTGTGAAGAagataa
agaagaagaagacgTGGAAGAATTGAAAAGACGCGTCAAATTGTTGGATT
CTGATGACGTCGAAATGATCAAAAAAGGTGCTCACCTCGACACGAAAGAC
CCGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTCCATGAGCTACAA
AGGAAAACAACTCGATGATACTGAAAAAGAACGAGAAGAAGAAGTAAGAC
AACGTCAACTGGCGCAAATCTTTTCACTGATGAACCAACAAAAGGAGAAG
TTTGGAGAGACCAGCATTGATGACCTCAAACAACAGATGAATATGTATCA
ATAATGGATAGTGGTGCAAGATATTTATTTGACTCGTTTAGTCGTAGTTG
TAGACTATTTTCACGGTCAAAACTAATGacgggtaatcaggaccactact
ctcgggtacctaatagccggggggtttggaataagcgcgggggggggggg
g
Run BLAST on NCBI

transcript from alignment at sc0000038:594384..598975+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003913 ID=TCONS_00003913|Name=TCONS_00003913|organism=Clytia hemisphaerica|type=transcript|length=4592bp|location=Sequence derived from alignment at sc0000038:594384..598975+ (Clytia hemisphaerica)
TGGAAAGATATTTTGAAGAAgcaatgattttcttttcaaggACGGACGTG
GTTATAAGTGTTTTCACCACGTTGATTGTGTCATTTCTGACGTTGCGTTA
CTTGTCCAGTAAAGAGGGGATCGAAATCCAAGAACTGGAATATAAAATAC
GAGTAAGAAANGCGTTACTTGTCCAGTAAAGAGGGGATCGAAATCCAAGA
ACTAGAATATAAAATACGAGTAAGAAAGGTAAGTGCAGTATCGCTATTCC
TTTAAATGATCATTGCACTGAGATGCATACAGTCATGTAAAGGTCACACC
CAGCCGGTGGCGTACCCAGATCCACATGTACAGTAAACGcacgcttattc
gaacttctactatttgaatctttctagaattcgaactaattctcagtaCT
CATCGAGGAAAAACCCTCTTAAACACTTTCTATAGTTCGAATATCTCtgt
gatttgaaaaaataaggCTCTCGAGtttgaattagcgagagttaacCGTA
AAAAGATTGCACTGAAATGCATACAATCAGGAGAACGTCACACCCGGCCG
ATGGCGGAGCCAGAACCACACATATAAATTTTTCAACGGGTGCCAACAGC
GGCTTCACCCGTTTGCAGATTAGCTGCTCAGAATCAAAGATTCtttattt
gctaattttacTGGAACTTTGAGGTTGGATGAATGAATGcagtttttatt
aaaatttcgatgagattgacaatttattttttgaatgaaCATTAATCAGC
AGTAACCCAGGATTGatttattatatattattgAGAATCCGTTGACCCAA
TTGTATACAAAACCAGCAATCATTTGGTACTATTTTTGCTATAGGTTCAC
CAGTTAACTCCTATCTCGTCATATGTGGAAGAAGTTCATTTGACTgattt
aaagaaagaaaattcgtGCTGAGGATAAGTTTAAATAAGGCTCCCTTAAA
AtaccttttttccaattttcaggATGGTGAaactgaagaaaatgaagata
aagACCAAGAAAATAAAGAGAAAGAGGAAGGTAAAACGAACCCCTGTCTC
GTATAATATGAACTCTGTTTCAAACACCCATGACTGTACTAAACGAACCC
CGTTGGAAAACCTCTGTTTCACCATTATTGAAAATTAACACCCATCATTA
TACTAACAAACAATGCCTGTCTCAACCACCCCTGTCTTCAAAGAACCCTG
TTTCCAATAACCCTGTCTCCAATAACCCTGTCTCAAATGAGTCCTTCTCA
AGCAAACCCTGTTCTAGATACCCTTAAAACGGCCCTTTCTCAAACGGTTT
GGATAGAAATGATGAAATTCAGACGATACCTAAAAAAAGATATGAACAAA
GTGTTATCCTTACCAATAAAGTATAAGCCCGaggggctagaatcgaatct
ccttggtaagatttgaagccaacaaatcctaccaaagttgcgcggcctag
cgTGGCctgcctggtttttacacaaatcgcagattgaaatgaaaatttac
tgctaaatttcgaaaaaaagtaacactcgaaaacaaaagaattgctagat
tcaaaactgtcgtcaaaaatacggcgcatataaggcttcactttttcttg
cctgagaaaggttagagattcgattctagcccttcgggcttatacttcat
cgATCCTTACCCCACGAAGACATCAAAACAGTATGATTTTGGTTCAACAA
CATTAAAGCTTGTTAACAAGGAGTTAACGTGATAattattctttatttta
ctTGTAAAATTTCGAGCAATAACGATAAACAGAGGAGATcaaacgaaatt
ttgaaaagatgtttgtttattttgttattttgaccctttgagagactatt
tTTCCGATGTTAAACTCAAAACTACCAGATTTTATGACCCTTTGTCGATT
TTTGATACTTcgtaattttgggaccctttcagagactcaTTTACTTtcag
agactttcgagggtttaaaaaagggacccttatatATACCTGGCACCCAT
TTTGCCCAAGTATCCCCCGGAGGAGTTAACGGTTATTCTTTTTTGTTCTC
CTGCAAAGGCTTAGGGGATAATGATGACGATATAGAGGAGATCAAAAGAA
ATTCGGATTGTGAAGAagataaagaagaagaagacgTGGAAGAATTGAAA
AGACGCGTCAAATTGTTGGATTCTGATGACGTCGAAATGATCAAAAAAGG
TACCTTATTATTAACTAATCAAGTATTGCACCCTAGTGCaatggtagagc
atccagcaTAGCCCCCGGGGTAGGGGGCTCACTTTTTTGCCGAAAAAggc
ttttttgaaaactttcagttattttttcatgaattcttttcaaattgaCT
CTAAAAAGGTCCTAAAAAGGTCCTAAAAAAGCGCTTTCCCCTTTCAACcc
actcaaaattcaaaatttacccAACCGGTGGGCAACATCAATTTACTCCA
ATATTTAGCCCCCTCACTTCAGCCCTCAAGCTTGGGGCCCTGGCattcgg
ctacggtgcgcaaggaggtcgtgggttcaatccccagccgggtcataatC
AAAGACTTTGTACTTATTACAAAAATCATACTTGATGCCTCTCAACTTGA
TGCTCAGTAATTAAGAGAAAGATCAAGAGTAACATGGAGAATAAGTGGCG
CCCTCTCCTACCTTCGGGTAAATAGCTATCGAAATAGGAGCCTTCTGGTT
GCCtctgactgcggtcgcagacttacttactaatCAAGTATTTAAACGCG
GGAAAAATGAGTGCTGCAATTCATTGACGCGAAAAACAGAGTTTTCGAGA
ATTGCCttggctaaaattttgttaCGGGAGTGTAACCAATTTGCGTTAAT
AACTTTTGTAGTAAGGTACCAAAGTGTAAAGATCTAGTTACTTCATTTTA
GGCGGAAGGCTTTTTACCTTGTTTTCCCtcaatttttgacgattttAGCC
CTTCCGTTCCCAATCGTTTCATTCACTGATAAATAAACTCGCTAGTCAAG
ACATGCGGTATTCCTGAAATGCTTCTGTCCGCGTTATTGATATCCTTTAT
ATTGAGCGATACTCCTtttgaaaaaggtattttttggTTTTCCTTTGAGA
AGATTCTGTCGTGAAAGAAGTTCTATTGCTGGCAGACTGAGAAGAAGACG
GTTTTTCGATTGCTTTCGATTCTTCTAACCTTGGCAATCTATGTAACACC
AAATCTCAACTCTAACTCATTTGACCAATTTCAGGTGCTCACCTCGACAC
GAAAGACCCGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTCCATGA
GCTACAAAGGAAAACAACTCGATGATACTGAAAAAGAACGAGAAGAAGAG
TAAGTTATTAGCAATGCTGCTTTTTGCCTCGCTGCATAGCAAACTAATCG
ATGGGAGCAGCTATATTCAGTTTGCTAGGTAACAGGTACGACAAAAGTGG
AGGAGGAAAAAAAGGTTCTATTATATTCTATTTCACCCATTGCAACTGAC
ATAATATGATATCGTAGTTTGCACACACCATCTCTGGTATGTTTTGGTAT
AGGGGGTGCGCAACGTGTAGAAAATTTCCGTTCGAGAGTCACACCCATAT
TGTGTTTTTgtcttttagaaactttgatgTAAGTTTTAGAGGTCTTTTAA
TTTCATTAGGTtcgaattaaaaatttgaatggctagagGGTAACACAATC
ATTCAATCGTaacctttttaagaaaattgaaacaggttaccACAGGTtac
tctcggacgggaattgtAAATACACGAttagcatcccctatatcaaaaca
tatcagaggagATGCCTGCAGCCTAAAGAGAGCGCTCAATTTTCCCTTAA
GAGTGCCGCGATCCATACCGCTCTGTTTTTAATTGTATCCCAGCCGAAAA
AAAGTCCAGATTGGTATTAGTTTCAAAATAGTGAGAGCTACAATgttctt
cgtgtgcacagacttGTTAGAAGCAAACTAACTTATTGAAATGTTCAATT
AGGtctataagatcacaaaaacgagtggtaagaacattttttgacaattt
tgatgGTCCCCATgcgacgtcatcacttttgtgAGGCTTGAAAATGAAcg
tgaaaatcaatatttgagaagctataaaggaaaatagctcacaattaaaa
aatcatcgaaatcgaaaaatttttgtttcatttgaaaGAGGAGCGGCTag
ggaacaaaaaatatcaCTACGGAAAACCTTGAATTTCTCCTGGATGTTTT
TAGAACATACTGTGGTGTCTCTCACTAAAAGGTTTGTCTATATACTGTag
ttctaaatatttttttccatatTCTAATTCTAGAGTAAGACAACGTCAAC
TGGCGCAAATCTTTTCACTGATGAACCAACAAAAGGAGAAGTTTGGAGAG
ACCAGCATTGATGACCTCAAACAACAGATGAATATGTATCAATAATGGAT
AGTGGTGCAAGATATTTATTTGACTCGTTTAGTCGTAGTTGTAGACTATT
TTCACGGTCAAAACTAATGacgggtaatcaggaccactactctcgggtac
ctaatagccggggggtttggaataagcgcggggggggggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002191XLOC_002191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003913-exon-sc0000038-1491911889:594384..594611TCONS_00003913-exon-sc0000038-1491911889:594384..594611Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1510915933:594384..594611TCONS_00003913-exon-sc0000038-1510915933:594384..594611Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1575043694:594384..594611TCONS_00003913-exon-sc0000038-1575043694:594384..594611Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1491911889:595356..595413TCONS_00003913-exon-sc0000038-1491911889:595356..595413Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1510915933:595356..595413TCONS_00003913-exon-sc0000038-1510915933:595356..595413Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1575043694:595356..595413TCONS_00003913-exon-sc0000038-1575043694:595356..595413Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1491911889:596442..596582TCONS_00003913-exon-sc0000038-1491911889:596442..596582Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1510915933:596442..596582TCONS_00003913-exon-sc0000038-1510915933:596442..596582Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1575043694:596442..596582TCONS_00003913-exon-sc0000038-1575043694:596442..596582Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1491911889:597618..597732TCONS_00003913-exon-sc0000038-1491911889:597618..597732Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1510915933:597618..597732TCONS_00003913-exon-sc0000038-1510915933:597618..597732Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1575043694:597618..597732TCONS_00003913-exon-sc0000038-1575043694:597618..597732Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1491911889:598717..598975TCONS_00003913-exon-sc0000038-1491911889:598717..598975Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1510915933:598717..598975TCONS_00003913-exon-sc0000038-1510915933:598717..598975Clytia hemisphaericaexon
TCONS_00003913-exon-sc0000038-1575043694:598717..598975TCONS_00003913-exon-sc0000038-1575043694:598717..598975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:594384..598975 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.05	55.265	153.67	150.601	7.89368	5.21442	14.1777	13.4314	9.4829	11.6548	9.13624	10.8123	8.55079	8.25341	3.25073	7.12404	3.8006	13.7243	8.22778	8.34349	16.8505	17.036	26.8907	24.3263	85.5396	81.2414	22.2329	24.0396	23.7982	25.3878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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