TCONS_00003904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003904
Unique NameTCONS_00003904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003904 ID=TCONS_00003904|Name=TCONS_00003904|organism=Clytia hemisphaerica|type=transcript|length=3314bp
tacggcaatgaattttgaatagGTCTGTACAGACTAATTGATCAGAAAAC
TAGACCCTTCTTCATgataatatttatattttttctagAATGATAAAAAG
TAATGAGAAAGTAAAGTGAAAAATGGACCCGTTGCAGAAGTTGTTGAACA
ATAACAAACCAAATTCATGGTATACTTGCAAGACACCTCTTATGAAGGAT
GTACCGATCAAACTCGATGTGGAGGACCGCAAAAATCTGATgtcattgaa
aatgaaagcatgTAAAATAGAACAGAAAATCGAAGAAAGACGAAAGAGGA
AGAGAGAAGAGATGATGCAAGCTTGTCTATTTGTTCAACAGAAGATTCAG
AGCCGACcaaaaaagaaccaacaaagtTTATCATCAGCTTCGTCCAACAC
AGTCACTCCAGAAAACACTCCCCATCCCCAAGAAAGGGCTACCCAGCTTC
AAGGAAATGCTTCTTACCACCAAGAAAGGGCTACCAACAATCAAGTAAAC
ACTCCCCACCTTCAAGATAACATTTCCCGCCATTACCAAGAGCCTGtaga
acaaaacaaaacaccAGAATTGCATCCAAGCATCTCTGAAAACAATATTG
TCCAACAAATGGATGAGCTGATGGACCTCAAAGATGAACAAGACGAACTT
GAATCGTGGTACGAAATCGAGAAAATCAAATTAGCTGCAAAATACGATCA
AATGAGACTTGAAAACATACGTAGACAGAAATCCATCATAGAGAATAGTC
ATGATATGCTTGTAATGAGTGTAGAGAAAAATACACCTTTGAAGAGTTTT
CAAAACCAAAGTCATCAACAACTCGACTCTCCTGTGTTATTCCAAGATTC
AGAATCAAGCAGATATCATAGTGGAAGTATTACTCGTTCTTCACCTAACA
CCTCTGATTCGTCCCTACCCAAATCTTATAGTAGTAATCACTCACAGTCT
GAGCAACAACAGAAAGTACATTTTACAATTACAAGCGAAAGTGATGAAAA
TCCTGTCATCACAAAAAGTCATTCACCATCCGAATGTATCAAAGGTATTG
AAAGTGCACAAAACCAATATCCACCCCAATATGATATTCAAGACTCTTTG
ACCCACTCTCAACAATCACCTAACCAACAAAATTCAGAACCAGAAATGAT
TTACCAAGATCCACCAAGTAATGTGCTTCAGAATGGTCCAAGTCCTACCA
GTGCAACCAATAGTTATTTTTCATCTCAAAATAATGCTTTGCAAAATCAA
AGTCTCACCGATAATATGAATAATAGAAACGCAAACAGCTCTCCTAACAG
CAATGCTTCACAGAATCACCAAGAACAATCTAAACCAAATTCTGAGTTGA
ACAacccagaaaaattttcaagagaTTCTATCGCAAACATGGTTAGTTTT
GGAAGCGAACTCTTACTCAGACATTATCAATCAGTTGATGCCAAACTGCG
AAGAAAAAGTAGAGCCACGAAATTCTTTACAACACCCGAATCTAATAAGA
AGAAACAAGCTACAAAATTAATAACATATTCAACAGATTTATCGCCGTAC
CCAACAACAAACATTGAAGGTGATTTCAATACTCCAGGTAATGTTTTCAC
CAGCCAACTAACCACTCCTTGTACTGAGCAAAGAGAATTTCAACAGCCAA
CAGAATCAACCAGGAAACTGATAAACAATAACCAAGAAAACACACCATAT
CCAGGATACGTCAACAAATTCACTGAAGATTTGTCACCAGCTGTTCAATC
ACCGTGTGTTGTCAACCAGAACCATATTGATACTCCTTTCCCGAAACCAC
AGAACCAACACCCTTACACTACAATAGATCAACGCCAATTCCAACAAAGA
AACCATAACCTTTCCCATAACTCCAATCAAAACGCTGGTATACCTTTATC
GAAATCGACTCTCCACATCCCATCCAAGTTAACCAATAAATCCATATCTA
CCCCAGCTCTGAATCAAGATTCTCCACGTGTTACCAACAAAACAATTATG
ACAGTTTCCACTCCGAACATACACGACAGTCAAGACTCAATAGAGAAAAC
ATCGACGCCGCATGAGGCTCAGCGATTCAGCAGCCCTAGACAAAATTTCC
ATCATCTTTCATTAATTTATGGGGATGAAATTCCAAGAATGGATATCTGT
AATGAGGACCAAAATCGGTCTTTCCACCAACAAAGATGTTCGCCACTGTT
CGCTTTATACAAAGGTTTCATGGTACGTCGCTTGTTGAAAACAAGAAAAG
TCAATGAAATCATCAAGACAATTAAGGATACACGTTCATTTTTGAGTGAC
ATCGATAAAGAAAATCGTGGTAAATTCAATTTAGCCGATCGACAGCTTCG
TACTCGACTGCTTGACGAGGTTTCAACTAAACAAGGGAAGCTGAATGACA
TTCTCACAATGTCACCCTCTGATCAATGGACCATTATCAAAAAGGATCGA
AAACAAAAGCAAGATAAGATTCAACAACCTCGAAATTCACGACCTTCTAT
GATGGTTGACAAAAGACCAAAGACAGCTCCAGCAACCAAGAAATTATCTG
CAGCCTCTCTCAAAACTATGAAAAGACGTCAAGAGAATTTACACAATATC
AACAACAACAGACCAAAGACAGCACCACCACCAAAAACGCCTGTTAAACA
AGGAGTCAGCAAGAAGACCGCATCTCAAAGACCAAAATCTACTGGACGAG
GTGCATTGAAACCGATCCAGAGTCCACATTCTCCGACCATGAAAAAACGA
TAATTAATTTTGGAGCATGCGTAATTTAAAGTTATTATTATGTTTTACTG
TTATagtattctttttgttttttttcttttgtgggGGAATTCATCTCTTC
TGTCAGTCCATCTATTATTTTGAATCCCAAATActttatctttagttttt
ccTCTCTTCCAATTCTCTTCTTCGAATtgtttatcggcattgggccgata
agctccagaccccctccccccttcctcttatcggccaaaatttttgaaac
caacttttacatcttcgaaaacacaatttttttccagCCATCGCGTTGAT
CTCGCTTTCCACCCGTCTTCGTTGAGTTTTTGACTATTTGCACCAGcatt
gagtttgttcatacccgcattgatattgttaatcaaaacgaaAATTAAAA
AGACGCGATGAAGTCGCAACATTTCGAAGGAAATGGCAGCAcgctggcca
atgaaaaaagagtttttttattaaagctaattcaaaactgtacttttaaa
gttgCGAATTTGTGCGCgaaggtgaaagcaagtgaaattgtatgctttca
gtggagtttgtgga
Run BLAST on NCBI

transcript from alignment at sc0000038:521825..534642+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003904 ID=TCONS_00003904|Name=TCONS_00003904|organism=Clytia hemisphaerica|type=transcript|length=12818bp|location=Sequence derived from alignment at sc0000038:521825..534642+ (Clytia hemisphaerica)
tacggcaatgaattttgaatagGTCTGTACAGACTAATTGATCAGAAAAC
TAGACCCTTCTTCATgataatatttatattttttctagAATGATAAAAAG
TAATGAGAAAGTAAAGTGAAAAATGGACCCGTTGCAGAAGTTGTTGAACA
ATAACAAACCAAATTCATGGTATACTTGCAAGACACCTCTTATGAAGGAT
GTACCGGTATGTATtatcaacttcagttgagctaaaACTGTAACTGTGTG
TGTGTAGTCCCTTGACAGCCTGGAGACCTACAAAATGGTTCGCCTTAAAA
TATagtttgccttaaaaaatgagttgccttaaaaaatggttCGCCTTAAG
AAATGGTTCGCCTTGAAAAATAGTTTGCCTTAAAAAACGGTTCACCTTAA
AAATGGGTTGCCTTTTAAGGAATGGTTGCCTTATTAAAGAATGGTTGAAT
TAAATACACCCCTTTTTAACTCATCCATGATTGTTCtagtttaaaatttt
gattttttgagattGGGGATGAGTTTTTCACTTCTTCTACAATCGGGCTT
TGTGTTTTTTTGTgggttgattttcaaatttcttattacTACTTCAGATC
AAACTCGATGTGGAGGACCGCAAAAATCTGATgtcattgaaaatgaaagc
atgTAAAATAGAACAGAAAATCGAAGAAAGACGAAAGAGGAAGAGAGAAG
AGATGATGCAAGCTTGTCTATTTGTTCAACAGAAGATTCAGGTTATTCGA
GTTAAATTTGACCATTCGTTTAATGACCCAGGTTGTAGAACAATTTGCCT
AactcatcaaaatattttgagcccTATTGGGccattcttggacttttgga
ctcagagttaaaactctacccttccaacctagaatttagagcgcttccaa
atcgtttgtggttgtaagattttgtgggaatttcccttttttctcaaata
ttatgactttgatttgaTTGTACCACATACTAGTATTGCTAATTAGGCAA
ATTCCTGGAAGACAGAAAATATTTCAccactgcaaaaaaaatatttgttg
tttTCACACTTATTTTGCTTTCAGAGCCGACTTAAGGTTGATTTCAATGC
TTCTTTCAGAGCCGACcaaaaaagaaccaacaaagtTTATCATCAGCTTC
GTCCAACACAGTCACTCCAGAAAACACTCCCCATCCCCAAGAAAGGGCTA
CCCAGCTTCAAGGAAATGCTTCTTACCACCAAGAAAGGGCTACCAACAAT
CAAGTAAACACTCCCCACCTTCAAGATAACATTTCCCGCCATTACCAAGA
GCCTGtagaacaaaacaaaacaccAGAATTGCATCCAAGCATCTCTGAAA
ACAATATTGTCCAACAAATGGATGAGCTGATGGACCTCAAAGATGAACAA
GACGAACTTGAATCGTGGTACGAAATCGAGAAAATCAAATTAGCTGCAAA
ATACGATCAAATGAGACTTGAAAACATACGTAGACAGAAATCCATCATAG
AGAATAGTCATGATATGCTTGTAATGAGTGTAGAGAAAAATACACCTTTG
AAGAGTTTTCAAAACCAAAGTCATCAACAACTCGACTCTCCTGTGTTATT
CCAAGATTCAGAATCAAGCAGATATCATAGTGGAAGTATTACTCGTTCTT
CACCTAACACCTCTGATTCGTCCCTACCCAAATCTTATAGTAGTAATCAC
TCACAGTCTGAGCAACAACAGAAAGTACATTTTACAATTACAAGCGAAAG
TGATGAAAATCCTGTCATCACAAAAAGTCATTCACCATCCGAATGTATCA
AAGGTATTGAAAGTGCACAAAACCAATATCCACCCCAATATGATATTCAA
GACTCTTTGACCCACTCTCAACAATCACCTAACCAACAAAATTCAGAACC
AGAAATGATTTACCAAGATCCACCAAGTAATGTGCTTCAGAATGGTCCAA
GTCCTACCAGTGCAACCAATAGTTATTTTTCATCTCAAAATAATGCTTTG
CAAAATCAAAGTCTCACCGATAATATGAATAATAGAAACGCAAACAGCTC
TCCTAACAGCAATGCTTCACAGAATCACCAAGAACAATCTAAACCAAATT
CTGAGTTGAACAacccagaaaaattttcaagagaTTCTATCGCAAACATG
GTTAGTTTTGGAAGCGAACTCTTACTCAGACATTATCAATCAGTTGATGC
CAAACTGCGAAGAAAAAGTAGAGCCACGAAATTCTTTACAACACCCGAAT
CTAATAAGAAGAAACAAGCTACAAAATTAATAACATATTCAACAGATTTA
TCGCCGTACCCAACAACAAACATTGAAGGTGATTTCAATACTCCAGGTAA
TGTTTTCACCAGCCAACTAACCACTCCTTGTACTGAGCAAAGAGAATTTC
AACAGCCAACAGAATCAACCAGGAAACTGATAAACAATAACCAAGAAAAC
ACACCATATCCAGGATACGTCAACAAATTCACTGAAGATTTGTCACCAGC
TGTTCAATCACCGTGTGTTGTCAACCAGAACCATATTGATACTCCTTTCC
CGAAACCACAGAACCAACACCCTTACACTACAATAGATCAACGCCAATTC
CAACAAAGAAACCATAACCTTTCCCATAACTCCAATCAAAACGCTGGTAT
ACCTTTATCGAAATCGACTCTCCACATCCCATCCAAGTTAACCAATAAAT
CCATATCTACCCCAGCTCTGAATCAAGATTCTCCACGTGTTACCAACAAA
ACAATTATGACAGTTTCCACTCCGAACATACACGACAGTCAAGACTCAAT
AGAGAAAACATCGACGCCGCATGAGGCTCAGCGATTCAGCAGCCCTAGAC
AAAATTTCCATCATCTTTCATTAATTTATGGGGATGAAATTCCAAGAATG
GATATCTGTAATGAGGTATAATCAAACTTTTCCTAAAACCTTAACTTTCG
CCAATGCGATCTTCAAAAAAACTCGGATAAGTTCTCTAAGCTGTATTGAT
CCCTTCTACTCAATCTATcgcttccataatggtggaaattacgtaacttg
aCGAAACCTAACAACCCTGAATTAACATTTAGCTGAAAATTAGACATTAT
TTTAACTGTACAGATATCTCAAAACCTTTTGTTTTCAGCAGGACCAAAAT
CGGTCTTTCCACCAACAAAGATGTTCGCCACTGTTCGCTTTATACAAAGG
TTTCATGGTACGTCGCTTGTTGAAAACAAGAAAAGTCAATGAAATCATCA
AGACAATTAAGGTAAGAATTAGCCATTGGGTTTGAAGCCCGAAGGGCTGG
AGTAGAACCTCTAACCTTtcgcaggcaagaaaaagtgaagccacttattt
cccatccagaacacatgtagaacgcgccgcaatcatgacgacgaatTGTA
TCTAGTGGCTCCTTCGTTTTTgaagactacattttttgaaatctagcgat
aactttcaatccggcgtttgtgtaaaaaccaagCACGGGCGTTccggatg
ggaaataagtggcttcatttcccatcctggagtctcgagtctagcgcTTA
GGGCTTGGAAATCAATGGAATTAGCAATGTTTTTGGCCCCTTACTTTGTT
TTTACCAGGCACAGTTTGGAGGTTCGCCCGGGCTCGCCTTTTTGTTATTG
AAATATTGCTATTACTACAAGGCGTGTTTTAACGGCCATACAGCGtttta
ttgacattttagaaGGGATGTTGCATTCCCGGGCTTTTGTTTCGGTCCCC
TGTTAGGTAAGATTGGTCTTTGAGTATCTTTGGTGCAAGattttggattt
gtttagacAACACTTTTACAACGATATGTCCATGACATAATCTTTAGTAC
ATTAATACCCGGAATGGCCGGGGGTACTGCGGCATGATATCGACCCTggt
tttcgcgaaaatttgtctTACTACCACCACTCTCTTTTTAATATAATACC
TGGTANATGATATTCAAGACTCTTTGACCCACTCTCAACAATCACCTAAC
CAACAAAATTCAGAACCAGAAATGATTTACCAAGATCCACCAAGTAATGT
GCTTCAGAATGGTCAAAGTCCTACCAGTGCAACCAATAGTTATTTTTCAT
CTCAAAATAATGCTTTGCAAAATCAAAGTCTCACCGATAATATAAATAAT
AGAAACGCAAACAGCTCTCCTAACAGCAATGCTTCACAGAATCACCAAGA
ACAATCTAAACCAAATTCTGAGTTGAACAacccagaaaaattttcaagag
aTTCTATCGCAAACATGGTTAGTTTTGGAAGCGAACTCTTACTCAGACAT
TATCAATCAGTTGATGCCAAACTGCGAAGAAAAAGTAGAGCCACGAAATT
CTTTACAACACCCGAATCTAATAAGAAGAAACAAGCTACAAAATTAATAA
CATATTCAACAGATTTATCGCCGTACCCAACAACAAACATTGAAGGTGAT
TTCAATACTCCAGGTAATGTTTTCACCAGCCAACTAACCACTCCTTGTAC
TGAGCAAAGAGAATTTCAACAGCCAACAGAATCAACCAGGAAACTGATAA
ACAATAACCAAGAAAACACACCATATCCAGGATACGTCAACAAATTCACT
GAAGATTTGTCACCAGCTGTTCAATCACCGTGTGTTGTCAACCAGAACCA
TATTGATACTCCTTTCCCGAAACCACAGAACCAACACCCTTACACTACAA
TAGATCAACGCCAATTCCAACAAAGAAACCATAACCTTTCCCATAACTCC
AATCAAAACGCTGGTATACCTTTATCGAAATCGACTCTCCACATCCCATC
CAAGTTAACCAATAAATCCATATCTACCCCAGCTCTGAATCAAGATTCTC
CACGTGTTACCAACAAAACAATTATGACAGTTTCCACTCCGAACATACAC
GACAGTCAAGACTCAATAGAGAAAACATCGACGCCGCATGAGGCTCAGCG
ATTCAGCAGCCCTAGACAAAATTTCCATCATCTTTCATTAATTTATGGGG
ATGAAATTCCAAGAATGGATATCTGTAATGAGGTATAATCAAACTTTTCC
TAAAACCTTAACTTTCGCCAATGCGATCTTCAAAAAAACTCGGATAAGTT
CTCTAAGCTGTATTGATCCCTTCTACTCAATCTATcgcttccataatggt
ggaaattacgtaacttgaCGAAACCTAACAACCCTGAATTAACATTTAGC
TGAAAATTAGACATTATTTTAACTGTACAGATATCTCAAAACCTTTTGTT
TTCAGCAGGACCAAAATCGGTCTTTCCACCAACAAAGATGTTCGCCACTG
TTCGCTTTATACAAAGGTTTCATGGTACGTCGCTTGTTGAAAACAAGAAA
AGTCAATGAAATCATCAAGACAATTAAGGTAAGAATTAGCCATTGGGTTT
GAAGCCCGAAGGGCTGGAGTAGAACCTCTAACCTTtcgcaggcaagaaaa
agtgaagccacttatttcccatccagaacacatgtagaacgcgccgcaat
catgacgacgaatTGTATCTAGTGGCTCCTTCGTTTTTgaagactacatt
ttttgaaatctagcgataactttcaatccggcgtttgtgtaaaaaccaag
CACGGGCGTTccggatgggaaataagtggcttcatttcccatcctggagt
ctcgagtctagcgcttaggcttggaagtcaatggaaTTAGCAATGTTTTT
GGCCCTTACTTTGTTTTTACCAGGCACAGTTTGGAGGTTCGCCCGGGCTT
ACCTTTTTGTTATTGAAATATTGCTATTACTACAAGACGTGTTTTAACGG
CCATACAGCATTTTATTGACATTTTGGAAGGGCTGTTGCATTCCCGGGCT
TTTGTTTCGGTCCCCTGTTAGGTAAGATTGGTCTTTGAGTATCTTTGGTG
CAAGattttggatttgtttagacACCACTTTTACAACGATATGTCCATGA
CATAATCTTTAGTACATTAATACCCGGAATGGCCGGGGGTACTGCGGCAT
GATATCGACCCTGGTTTTGGCGAAAATTTGTCTTACTACCACCACTCTCT
TTTTAATATAATACCTGGTACTAACGTTTTTGAGGAAAAAGGGGACGTCC
AACCAATAGCGTTGTGGCAGGGGACCGGGTGACACGCCCCCCCacccccc
agcggagcttttttgaaggagTGCCGAAGAGCAAGGtgcgccaaaagaga
ttttttaaacgccccaatcttaaaaatcatattttatgcgccttaaattg
tGCCCCAGGAccataattttaaaatacttgcaatttttttcgctcgcaat
aaacttctttgcaatctagctaatttacaagtttgtgtacaatatagcat
cattaaatgaaaatttaactttctttttcagcattttgagcctcaaattg
ttatTCTGTTCTTAATTGTAGTGTGAAATTAAGGTATTTCAAgcttttta
cccaatttttactactatgaacgccactttggaaaatttgggggggcgcc
atttaaaaaaaattgactttggctcCTCCAggaaaattttcccacaacgc
cactgcgtCCAACCCTATTTAGAAACCggttataaaaaaaaatcggtTCA
CCACCTTAGACACAACAGCCATGAATTGCCTGGCATTTTCGGGTGTTATT
TAATAGAATAGTTCATATCTTAAATTTCACCTACATCCCTTTTTAATCGG
TTTACTTCACCTTGCTTAATACTTTAATTAATAGCACtaattttcttttg
taaaaacaattttataataacNCTACTTTAAATAATAGCACTAATtttct
tttgtaagaacaattttataatagcattgaggctcaaaatcgccaaaaaa
taagagcaattttaagaacaatgctgaccCTGGAATTACTAAATTCCAAG
CAATTTAGGgttcaaagtagtaaaaatttggtaaaaagcCTTAATTTCAC
CCTATAATTAAGAACAGGATAACAATTTGAGTCTCAAAATgctgaaaaag
aaagaacaactgAACTTAATCAAAAATCTActtgtttcttataaataata
GAATGTACTCTTGATATTTCTTTGTGTAGGATACACGTTCATTTTTGAGT
GACATCGATAAAGAAAATCGTGGTAAATTCAATTTAGCCGATCGACAGCT
TCGTACTCGACTGCTTGACGAGGTTTGTTACTCTtataattcaattttct
ttgttatgatataaaaaagaggcgcgcctctatgctgacaaagcagagta
aacaaaagaatttctctaAATGTGAGATCGCGCAGCGTCGAAGGTGGAGA
AAATTGCTCTTTCTTTTGTTAGAAAAATGCTGTTCAAGCGTATGGTCGGA
GATGATGTTAAATGATGTCTTCTAATCCAACATTATTTTGATTTGCTATA
ATTTTATCTCGGATGTTTTATTGTCCAGTTTAGTTCATCATACCATAAAA
AGATGGAAGAGATAACAACTTCTTCAAATCGACGTTTTCTGAGAAATTAG
TAAAACAGAttgataatttcaaactttaatttttctattcttCCTCCAAT
TATTGCCCTTgatgttggaaaaaaatgtttattttactCAAAACCTTTTA
GCCCTGTTAGACTGTTAGCCCTAGCCTAGTTAAAACTAAGCCCAATTCAC
AAGGCTAGAACACACGGCTAGAACACACGGCTAATACCAATATAGCGTTT
TCAGTGCTTTAAAGATTtcttatatttacggattttaactTTGtcccatc
agatttatcctagtgactgaatcaacCTAGCTTAGATATTAACCATGCGT
ACGTTCTCAAACATAAAACCATCCAAACTCCTAACTTCCTAAACTGATGG
TTGCATCAAATACACGTAACCAGTGCTGTTGGTCAAGAAAAAGTGTACGG
TTTCTagtaaataaacaaacttcttctattgtttaagtgacgttttgggt
ggaaaatttcaaaagttctcagactctccagtggtgcatatcatgaatat
tgtaGTTGAACACCATTTAAAGACTAAAGACTCTCGTATATAATTTTAGG
TTTCAACTAAACAAGGGAAGCTGAATGACATTCTCACAATGTCACCCTCT
GATCAATGGACCATTATCAAAAAGGATCGAAAACAAAAGCAAGATAAGAT
TCAACAACCTCGAAATTCACGACCTTCTATGATGGTATGTTTGTCTTTGT
TCGAATGTTCATATCTTTCATCTCTTTGTGTACACTTGTCTGTGTATTGC
tgtattgaataacaaattttgAGGGAGCGACGGTCGAGTGATCGATGACA
GCGCCTGAAACCAGTGGTTCCCGACTTGATCACAAACTGCTTCCAACTCA
CAAGGCTCGAgataacgatttcaagtgggtctGACAACATTTTTCGATct
ggttgctttagcttgagaATTATGATTTTTCGGTCGACAATGAGCAATTG
TTTTAAGACCTGTGATAAGTTTTGCACTTATCATCCTTCCCATCTTATCA
TTCGCGTCCTAAAACTTCAATCATCTTATTTTCAGGTTGACAAAAGACCA
AAGACAGCTCCAGCAACCAAGAAATTATCTGCAGCCTCTCTCAAAACTAT
GAAAAGACGTCAAGAGAATTTGTATCTTTTTCTATAAGCTAATCCTTTAA
GTGTCAATGTCGggtgggctatataggaggacGAAGCCCTTCAGTAATGC
CCTGTTTGAGtaagaaatcgtcatttttggtctaactcgtaggaattgga
ttgagcttcatggtcaagcaaaaacaaaaattaaaagtgaGTTTTTTCCA
GCGatattttaagccaaaaagtaaaaaaatgcaaaaatgtgacaaaaatc
cacttttttgagattttgaccgtttttcgACCATCATTCTTGATCAatga
gtgatccaagaacctccaaatttcgCCCTGCATTACTCGATTCTGTCTTC
CAGTGAAGTAGTTtaaagttttaccactgggcgcCTTTCCGTCATTCAGG
CAGGtgcccaaaagaaagaggaaaCTCTAAGCTATCCAGCGAGCTatgaa
cgagcttctaactccttctagaacCAGAGATATCGCagcttttaaagttt
gaactagtgattttctttaaaaacttagaaaaaaagggCCGTGAAACTTA
CAGGGTCAAGCAAAGTATTCTACTATTTTTTTCAGGGTCATTAACCATAT
TTTTCTTGGCGAGGGGCTTTTAAATAGGGGTTTCCTCGAAAAAAGTTAGT
TCTTGCTACTAAAAAGGGAGTGAGGGCACCTAAGacaaattttcctaaaa
aacagTACTCCCTTTCCACCtgtaattgaaatgaatttccaAAGGCATTC
CAAAAGTTATCATAATCTGTCATTTATATAGGGCGTTCACACTCAAAAGA
TGCAACGGTCCAGAATGTGACGGAACGCGACGTAGCAtacttagaccatg
ttcacactaTACTCGATAGCTTTTCGAAAAGATTCGATAGCCCATCCGAT
ATAATGTGAACACTTCGGCATGAAACGCTACAAAGAACTCTCTTTGTTTA
CTGTGTTCGTTCACATTTGATGTAACGATAAAAAAGAGTAGTATTAATAT
CTCAAAAAATTATTATCGTCTCGAAAATAATATCGGATAGGGTCACTCAA
AAGATGCACCGGTCCAGAATGCGACGGAACGCAACGTAGCACACTTAGGA
CATCGTATCGTCTCAACACCTATCCGCTAGAAAAATCGGTTCGATAGATT
TTCTATCGTGTCGAAAATCATATTAGATAGGGTGTCCACGAACCAGTTAG
TGGATTTCAGCAGCCTACTCTCGAATACCTATTAGCCGGGGTATTGGAAT
Aagcggtgggggggggggggggaaaatctcaaaacttaataagtggggca
gggggtggaataaaaatgtcctgggtggaaaactttaaggaggctaatac
agcagaattaggacaaaagagggaactttcaaaaacattttcccaaaaat
taataagcggggggaaggttggaataagaatgtcctgggtggaaaatttt
cgaaaaattaattaccgGGGGACGgatattaggtacccgagagtaggttg
TATAAAGATGTTCAGAAAATGTAATGAAAGGGAGGGTTGAGAATTTTTGT
TCTTCACACCTTACTTATCTGGTAAAACATATTTTGTTAAAGGGTGATGA
AAAATCGCTAGGCAATACAAATTTTATACTGACATTCTTTTTGAATGGAG
TCTCTTCTGAAGCTATAAATATCAAGAGTAATCGAGTCAAATAAATATCA
AGTAATCGAGTCAAAAATATCACTTAAACCATCGTTTCTTCCTTGACTAC
AACTTTTCTCGTTACTTAAAAGACACAATATCAACAACAACAGACCAAAG
ACAGCACCACCACCAAAAACGCCTGTTAAACAAGGAGTCAGCAAGAAGAC
CGCATCTCAAAGACCAAAATCTACTGGACGGTATGTTTCTAGATAGAGAA
ATTTACAAGGCTGAAAATGCTTGAAGGATGCTTATAATTCGAAGCAAAAT
GTTaggaaaattctgaaaatcagtaaaatctcAACCAAACACGGTATTTC
GGAACCGTTTGGTCTCGAGACGAAGTGAAACCATAACGTCTGAACATAGT
CATAACCTTTGCTATGATCTTCCGCACGATATTCCTCATCATTCCTGATT
ATaactctttttggacctaccccggtggaggtcctataaattaacctttg
tccgttcgtctgttcgttcgttcgttcgtttgttattagctttcctcatg
attggNNcgcataactataaaccctcgaatgtgacggagcccgattttca
aaaaaaaagttttttgggcaaatttgggccaaaaaacggctaaaaaacgg
gttttttggactttgtgaaaaattaggtcattaattttttctgttttttt
gcatgaaagtagggtaccatcgtaggtaaaagatggcttaagcgaatttt
tgcaaaaaaattttgttggctcaaaaaacgcatgtttatctataagaatc
actattcataagcatacatcaatgttcttagtcaaattactcaatttttt
tatgagattttgctcaggagggcttgcttttaaagaatatgtgtttcgac
atgaaattttggttgcttggcgtgtttttataaaataactggccaaattc
gatatttttttacaagcacattatcaattacttaggtattagcttttctc
gagattggctctttcattctttacgatTTTTTGAACAAAGATGCATAACT
ATAAACCCTCGAATGTGACGGAGtccgattttcaaaaaagattttgggca
aatttgggccaaaaaacggctaaaaaatgggttttttggactttgtgaaa
aattggatcattaatttttactgattttttgcaggaaagtaaaggtacta
tcataggtaaaatacggttcaagcagatttttgcaaaaaaattgtagttg
gctcaaaaaacgcatgtttatctataagaatcactattaataagcataca
tcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtattagcttttctcga
gattggctcttttattctttatgattttttgcacaaagatgcatagctat
aaaccctcgaatgtgacggagctcgattcttgggaaaaaaaatttggggc
aaatttcagctaaaaagagatgtttttttgctctcgaagccttgaatatg
aaagaatatttcaagagcatgaaattttggtttctaaacgtgttttttta
taagaaacaaacgactaattttaatagatcgtcactatttgtgttttgat
tgattgtttaatggtcacgcttatgtagatatcaattatatatgtgttaa
atgcataaccaggtaggtccataaaagtatcacttgtttttttcgGTTTT
AGAGGTGCATTGAAACCGATCCAGAGTCCACATTCTCCGACCATGAAAAA
ACGATAATTAATTTTGGAGCATGCGTAATTTAAAGTTATTATTATGTTTT
ACTGTTATagtattctttttgttttttttcttttgtgggGGAATTCATCT
CTTCTGTCAGTCCATCTATTATTTTGAATCCCAAATActttatctttagt
ttttccTCTCTTCCAATTCTCTTCTTCGAATtgtttatcggcattgggcc
gataagctccagaccccctccccccttcctcttatcggccaaaatttttg
aaaccaacttttacatcttcgaaaacacaatttttttccagCCATCGCGT
TGATCTCGCTTTCCACCCGTCTTCGTTGAGTTTTTGACTATTTGCACCAG
cattgagtttgttcatacccgcattgatattgttaatcaaaacgaaAATT
AAAAAGACGCGATGAAGTCGCAACATTTCGAAGGAAATGGCAGCAcgctg
gccaatgaaaaaagagtttttttattaaagctaattcaaaactgtacttt
taaagttgCGAATTTGTGCGCgaaggtgaaagcaagtgaaattgtatgct
ttcagtggagtttgtgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002187XLOC_002187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003904-exon-sc0000038-1491911889:521825..522030TCONS_00003904-exon-sc0000038-1491911889:521825..522030Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:521825..522030TCONS_00003904-exon-sc0000038-1510915933:521825..522030Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:521825..522030TCONS_00003904-exon-sc0000038-1575043694:521825..522030Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:522422..522565TCONS_00003904-exon-sc0000038-1491911889:522422..522565Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:522422..522565TCONS_00003904-exon-sc0000038-1510915933:522422..522565Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:522422..522565TCONS_00003904-exon-sc0000038-1575043694:522422..522565Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:522934..524739TCONS_00003904-exon-sc0000038-1491911889:522934..524739Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:522934..524739TCONS_00003904-exon-sc0000038-1510915933:522934..524739Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:522934..524739TCONS_00003904-exon-sc0000038-1575043694:522934..524739Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:527083..527202TCONS_00003904-exon-sc0000038-1491911889:527083..527202Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:527083..527202TCONS_00003904-exon-sc0000038-1510915933:527083..527202Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:527083..527202TCONS_00003904-exon-sc0000038-1575043694:527083..527202Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:528904..528996TCONS_00003904-exon-sc0000038-1491911889:528904..528996Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:528904..528996TCONS_00003904-exon-sc0000038-1510915933:528904..528996Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:528904..528996TCONS_00003904-exon-sc0000038-1575043694:528904..528996Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:529874..530008TCONS_00003904-exon-sc0000038-1491911889:529874..530008Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:529874..530008TCONS_00003904-exon-sc0000038-1510915933:529874..530008Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:529874..530008TCONS_00003904-exon-sc0000038-1575043694:529874..530008Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:530360..530445TCONS_00003904-exon-sc0000038-1491911889:530360..530445Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:530360..530445TCONS_00003904-exon-sc0000038-1510915933:530360..530445Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:530360..530445TCONS_00003904-exon-sc0000038-1575043694:530360..530445Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:532197..532304TCONS_00003904-exon-sc0000038-1491911889:532197..532304Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:532197..532304TCONS_00003904-exon-sc0000038-1510915933:532197..532304Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:532197..532304TCONS_00003904-exon-sc0000038-1575043694:532197..532304Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1491911889:534027..534642TCONS_00003904-exon-sc0000038-1491911889:534027..534642Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1510915933:534027..534642TCONS_00003904-exon-sc0000038-1510915933:534027..534642Clytia hemisphaericaexon
TCONS_00003904-exon-sc0000038-1575043694:534027..534642TCONS_00003904-exon-sc0000038-1575043694:534027..534642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:521825..534642 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.27726	1.44237	1.19114	0.59614	0.404217	0.413037	0	0.406742	0.312714	0.128861	0.373624	0.148798	0.172716	0.512015	0.0297041	0.648079	0	0.0756888	0.286103	0.258851	0	0	1.14311	1.67904	0	0.307486	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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