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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003884 ID=TCONS_00003884|Name=TCONS_00003884|organism=Clytia hemisphaerica|type=transcript|length=2195bpRun BLAST on NCBI transcript from alignment at sc0000038:341070..350972+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003884 ID=TCONS_00003884|Name=TCONS_00003884|organism=Clytia hemisphaerica|type=transcript|length=9903bp|location=Sequence derived from alignment at sc0000038:341070..350972+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003884 vs. Swiss-Prot (Human)
Match: RNZ2 (Zinc phosphodiesterase ELAC protein 2 OS=Homo sapiens GN=ELAC2 PE=1 SV=2) HSP 1 Score: 288.5 bits (737), Expect = 8.578e-85 Identity = 203/697 (29.12%), Postives = 338/697 (48.49%), Query Frame = 2
Query: 233 NVYFQVIWSGTDGHPPCLFLFTDSKRYIFNCTEGTQRLFTQNRVKIGKLDTFFFTRHQWSHLGGFPGFAMTLRDSTNAANLGQLLATQKPQDVKKKLTVNVY-GPDGIQNVLAAAHGFMKFDKSGMCL-ETHEYGKNKVGKIYEDIELAVQPIPIFGSAPVSASGMSFSRHRLLEPLMP-------SLTHAPPALCFGIHLKPLPGKFDPVRANELGVPSG-----PLRGQLQAGIEVTLDNGTVVKKSDVCDPDIPGTHILIVDCPSISFIDSLTTNNILQKYTVKGEQQAGLVLHLSPQTVCDNPKYVKWIKKFQLETRHTFANNIPHNIPVFRGQYSLQAMLNVVDQNIFPLIEQNVKPEIGKTDIL-----YNLTKIQLRGISSNSVECFDHSSSFKEDKIEKL--QEIAQTALDTFKNQSKETEYELKSDEGRKRQVKENGAESGVTENKKLHLDATPKAKSYPQVLFLGTGAAIPSKYRNVSATLLFLSENNGVLLDCGEDTYGQLFRHYGNKIDNVLKRIKMILISHLHADHHLGLFTLLSR----ISAVKTPDQNVVVVAPYYYRNWFMSYAETSQPL--HCQFVSCRSTLDGSWLTKEIFVKSIK---------------VDHPASAHGF-MVKDKKHSVVYSGDTKPCQRLIQEGQNCTMLIHEATLEDEMFEDALTRKHSTTSQAL 2194
VY QV+ +G+ L++F++ RY+FNC EG QRL ++++K+ +LD F TR WS++GG G +TL+++ L + + + PQ K + ++ GP + H +++ M + + + + + GK ++ + +P+ + +S S S EP +P + + + F L G F ++A E+G+P G P+ ++ G +T G + ++C P PG ++V+CP SFI + N Q+Y K + LV+H++P +V + +Y +W+++F +T+H N ++ R + +Q LN++ +IFPL+ + G T + L K QLR ++ D I +E AL Q EY + +G K YP+++FLGTG+AIP K RNVSATL+ +S + +LLDCGE T+GQL RHYG+++D VL + + +SHLHADHH GL ++L + ++++ P ++VVAP + W Y Q + H + + +G+ ++ + I V H A G +V VVYSGDT PC+ L++ G++ T+LIHEATLED + E+A+ + HSTTSQA+
Sbjct: 57 TVYLQVVAAGSRDSGAALYVFSEFNRYLFNCGEGVQRLMQEHKLKVARLDNIFLTRMHWSNVGGLSGMILTLKET----GLPKCVLSGPPQLEKYLEAIKIFSGPLKGIELAVRPHSAPEYEDETMTVYQIPIHSEQRRGK-HQPWQSPERPL-----SRLSPERSSDSESNENEPHLPHGVSQRRGVRDSSLVVAFICKLHLKRGNFLVLKAKEMGLPVGTAAIAPIIAAVKDGKSIT-HEGREILAEELCTPPDPGAAFVVVECPDESFIQPICENATFQRYQGKADAPVALVVHMAPASVLVDSRYQQWMERFGPDTQHLVLNENCASVHNLRS-HKIQTQLNLIHPDIFPLLTSFRCKKEGPTLSVPMVQGECLLKYQLRP-----------RREWQRDAIITCNPEEFIVEALQLPNFQQSVQEYRRSAQDGPA---------------------PAEKRSQYPEIIFLGTGSAIPMKIRNVSATLVNISPDTSLLLDCGEGTFGQLCRHYGDQVDRVLGTLAAVFVSHLHADHHTGLPSILLQRERALASLGKPLHPLLVVAPNQLKAWLQQYHNQCQEVLHHISMIPAKCLQEGAEISSPAVERLISSLLRTCDLEEFQTCLVRHCKHAFGCALVHTSGWKVVYSGDTMPCEALVRMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAI 709 The following BLAST results are available for this feature:
BLAST of TCONS_00003884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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