TCONS_00003879 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003879
Unique Name	TCONS_00003879
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1524

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000038:324904..329534+

transcript sequence

>TCONS_00003879 ID=TCONS_00003879|Name=TCONS_00003879|organism=Clytia hemisphaerica|type=transcript|length=1524bp
CCACAGTCAAACTCACAGTTTCTTATAGCTCCTTTGCTACTACTAAACTT
TACTCTAAGAGAAATTCCTTAGAAACTCTTTATCTCGACATATCTAACAG
AGACCAAATCCAATGGAATCGTTCATCGCAGGATCAGCAAGCGGAGCAAT
CTCATGCTTTTTGTTCCAACCTTTGGACTTGATCAAGACTAAGCTCCAAG
CGCAAGTTTCAACTGCTACTTCACTTCAACAAGCTATTGTCGATGGTAGA
CTAGCTCCTAAACATAATTACAGtcaaagttCTGTTGCCTCTTTGCTCAC
CCAAGTTGTTCGTGAAGACAAAGTGCTTGGACTATGGAAAGGTTTAACAC
CTtCGCTGTACAGAACTGTGCCAGGCGTAGGGATGTATTTCTGTACACTA
CACACAATGAAAAGTGTTTTAGATGAAGAACCAACCTTCTATCAGAACTT
AATGCTTGGATTCACAGCTCGCGCATGCGTAGGAACAGCTGTTTTACCTA
TGACCGTCGTCAAAGCACGCTATGAgAGCGGAAAATACAAATACAAAACC
GTATCTGACGGATTACGTACCATCTGGCGTGCAGAAGGACTCCGTGGTCT
ATTCAGCGGATGTACAGCAACTATTTTACGGGATGCACCGTATTCCGGAA
TCTACCTCATGTTTTACTCACAAGGAAAGAAAACTATGAAAGATTTCGCG
TCTATCGATGAAAAAGATACAAAAGTTCATTTCATCTGCGGTATAAACGC
GGGATTGATGGCATCATTGGTCACACATCCTTTCGACGTCATCAAAACAC
AAATGCAACTCTACCCAGAAAAATACCGCGGTACTCAACACTGTATCAAA
GTGATTTTCTCACAATATGGATTTGCTGGTTTTATGCGTGGACTCACGCC
CCGCTGCGTGCGTAGGACACTGATCTCTGCTTTATCTTGGACCGTTTTTG
AGGAGATTATGAAACGACTAAAATTAAGgatctaaaaaaaaagaaaaata
tatattttcttaaaaaccttttttttgataTGACAAAATGATGTAAATAT
ATGTAAATaaattttagttatttttgcaaaaagagaTATATTCAGAAATT
TATGGCTTATATATTAATACTAtttcacaaaacaaaatacaattactatt
atttttttttacattgtCGCTATGAATGTTATAAATAGAATTTATTATTG
TTGTAGCCCTGTAAAATTAGGTCGTTTAAAAGTATCTTTAGCGTTTTGAC
TTAATCTACTAAAGATAAGTTTTTTTTGCTGTGGAAAAGCGTTTTCGTag
taaaatgaaaatgttttcaaaaaggaGACTTAACCAATGATCTGGTCAGA
TATTTGGCTCTCGTTTTTTCCCTTGTGTATTATTAAACatgtaaaattat
gaaatatataaaattaagaagaattATTTTCACAAAATGTAAATAGGTTG
ATGTaaataacaataaaatgtaTGATAGATAGAACTCGTTAGAGAAGAAA
TATGATTTGTATTAGATTGAAACA

Run BLAST on NCBI

transcript from alignment at sc0000038:324904..329534+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003879 ID=TCONS_00003879|Name=TCONS_00003879|organism=Clytia hemisphaerica|type=transcript|length=4631bp|location=Sequence derived from alignment at sc0000038:324904..329534+ (Clytia hemisphaerica)
CCACAGTCAAACTCACAGTTTCTTATAGCTCCTTTGCTACTACTAAACTT
TACTCTAAGAGAAATTCCTTAGAAACTCTTTATCTCGACATATCTAACAG
GTAGAAATCTCTATTTTCTCATTATTTCGTTTTCATATCATTTTTTTGTT
GAGGTTTTTTTGTGTGtgaatgtttttgtttcttctcgTTGTAGCGTCTT
TTCTATTCTCAGTCTTCTTCTTATGCAAAGTGAAAGCGTCTTTTTCTACT
GTTGCGTGACCATTTTATCTATTATATGTGTTCAATTTCAGTATGTACTT
TTTTTGGCACAATAAAATGTCACCTTCAACAAAATCTTaaccaaagaaaa
tcaaaaatttgaacgtTTTCATCATTACCATAATCACACACAAACACACA
ATTTAGAAgtagaaagaaattcaaaaaaaaaatcacgattttaaccattt
tcactaaaactttctttttttcttttctcttttttgatcCTTGTGTAGGG
ACTATAGGTTTGAATTTCGAGAATCAAGCTCGCTCGCCTGCTCGCTCACA
ACTTTAACACTCTAAGGACTCACTCACTCGGTTTTATCAGCACACTGTGT
GGACACACTCACCCAAACAATGGATTCAATATGGCAGACGCCTGCATTCA
AACCAACCAACAAAAACCAGAGTGTCCTTAAATTATCGGAAAGGTATACA
GAAGAGTCCAGAACCCGGACTCGAACCCAGGTCCCTAAACCTGGGACCCA
ACtcccaatttttaattattatttcaTTCTTCAGGGTGTCTCGTTTATAA
TGGCTTCTACTAACTTAAATTTAACTAAATCCTCATATTTCTCATTTCTT
CAGAGACCAAATCCAATGGAATCGTTCATCGCAGGATCAGCAAGCGGAGC
AATCTCATGCTTTTTGTTCCAACCTTTGGACTTGATCAAGACTAAGCTCC
AAGCGCAAGTTTCAACTGCTACTTCACTTCAACAAGCTATTGTCGATGGT
AGACTAGCTCCTAAACATAATTACAGGTACCTTTGCTATATTACTCTTTA
TAAGATTTTTAGAGGGATTAACAGGGctcaaatgtttaaaatttatgtca
ttttacCCCAAAATAACAGGAGGCAAAAACTCAAAGTTCACTGTTTTATC
GGAAACAAACTTACTTTTTCCTTcagaaaatatttaatttgaTCAGATAG
AATTTGCCAAACTTTAAGTTTTTCtcttcctttttatttttactatcAAT
CTACTATCGATTGTTCATTTTGATGATagttagaaaaattgaaatcgcag
caaaaataataatgttaaattattcaaaaatttaaaattctgtCTATTCC
CATTGAAAACACACGTTCTGTAGGTAGCTTGAAATTGTAAATTTGAAGAg
tggaaaaatttaattttttttattttctttttcccttttttttagtcaaa
gttCTGTTGCCTCTTTGCTCACCCAAGTTGTTCGTGAAGACAAAGTGCTT
GGACTATGGAAAGGTTTAACACCTGTAAGTATTGCTCCTTGTTATGATca
agtgtaagaaaatatagaACTGTGTTGTGGAGCAAGCATTATTCAAAAAA
GGTTTTCTATACCAGCCAAGACAGCTCGTTTTGCCGTGAtgtttgaaata
tctttagcgctattttttcaccaaatatTTTTTCCGCTAAAGCCTTTCAA
AAACGTCAATTTCTCTTTATCATGCTCACGATGAAGTTTTTAATCTTTGA
AAGGAGCTTCATTCTGATAAGCAAGATTCTTATCAATAGTTTATTGCAAA
CCTCTTTCTTACTAAGTAAattcaattttcctagaaaccaAAAGTGATTC
TTTTTCAGAGCGTGACAAGAAATTGAAAACCCTCATAATACTGTTTTCTG
TTAGCAGCAATGCAAATTCCTTAAATTACTCTCAGACATTACTGTGGGGT
CGAATGACTCAACGAATGACTGGAATTCtaacattattttttcttcttgt
atttttttagtCGCTGTACAGAACTGTGCCAGGCGTAGGGATGTATTTCT
GTACACTACACACAATGAAAAGTGTTTTAGAGTAAGTAATAGTAATATGT
CCATTCTTATTCATTACTGTTAAGTTATGTAAGTCACTCAaagatgtatt
tttttataagaattttgaaCTACAGTCAATATCTAATCTGTTGTAATCTG
TTTTTACATAATAGTGACTTTGCAAGTGAAGGACTGTTTCATTCAACACG
CTTTGGGGATTTCATTTGAATTCTTACTATAAAAATACTTGGTCACGCAT
ACATTGTAATAAAAGAAACCTCGTTTATagcgagaaaaaaaagtttaaat
tctCATGCTGAAAATgtcattaaaaattatttaaaaaagcaTAACAACCC
TCAGATATGCCTCTCGCCAAACCGGTTTGACCACATTACAATGTCATCTT
TACTATTTCAAAAAAACGAAACGAAATTTCATAATGATATTTTAATCGCC
TTACTATTAAGCAACTAATTTTCTCAAGGGGTCTATgagtaattaacttt
ttttgaatatctAATGGTCTGACAGCCAGCCCTTCCGTTGCAAAGTCACC
ATTATGTAAAAACAAATCACAACAGATTAGATTGAATATTTCGAGGCCTT
AGTTACCTATGAAAGGATAATACCTTTCCGTAAACAACCCTAGTGCAaaa
ccttatcggggaaaacttcgtcggggaaaagtgacgaaattttggacaag
tgacgaatattttccccgacgaaaattttccccggccttaatgcgtttac
caactaccggcaagtgacgaatttttccccgataaggtagtaacTAAAAA
CTGACTAAGTTCAAAACGTTTTGTCAAACTCTCATGCAAGTTTTTGTGAC
TTATAAACATTCACATTGAAGCAAAACAAAAACTGTTAGGCTAAGAAACC
TTCTCTTTCGAGTGTGTTGTACTAAGCATTGGTCTAAGATAAATACACTT
GAGAGTTTGTCTTAGCCTAACCATGAAAGAATCTGTTTATTTAATCTCAA
cgtttttcttcttattttacAGTGAAGAACCAACCTTCTATCAGAACTTA
ATGCTTGGATTCACAGCTCGCGCATGCGTAGGAACAGCTGTTTTACCTAT
GACCGTCGTCAAAGCACGCTATGAggtaattattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattgattgattgattgattgatggaTTGATGACGTAGCCTAAGATTT
TGTCTAGTTTTTTTTCCAAGAGATAATTTGAAACATTTACATTCTCATGA
AGCTTACAGTGTGTTCTTACAAAGTTCTTCTCTCCTTCTTTTTCAGAGCG
GAAAATACAAATACAAAACCGTATCTGACGGATTACGTACCATCTGGCGT
GCAGAAGGACTCCGTGGTCTATTCAGCGGATGTACAGCAACTATTTTACG
GGATGCACCGTATTCCGGAATCTACCTCATGTTTTACTCACAAGGAAAGA
AAACTATGAAAGgtaaatgattattttttgacATGATTGGGAGGTTGGGG
AGTTTGAAGTACAGTATCTTATCTTCTGTTTAAATTCTATGTGTTAGGTG
AAAGTGAAACGAGCAGCACTTATATAAACAATAATATCAGCTTCATAccc
atttcaacaatttttgaaacGCTAGCGGACACTATCCAAGAAAAAATTGT
CTccttttttgttgcttttactCATCCTTCTTTTCTCTTTTATCCACAGA
TTTCGCGTCTATCGATGAAAAAGATACAAAAGTTCATTTCATCTGCGGTA
TAAACGCGGGATTGATGGCATCATTGGTCACACATCCTTTCGACGTCATC
AAAACACAAATGCAACTCTACCCAGAAAAATACCGCGGTACTCAACACTG
TATCAAAGTGATTTTCTCACAATATGGATTTGCTGGTTTTATGCGTGGAC
TCACGCCCCGCTGCGTGCGTAGGACACTGATCTCTGCTTTATCTTGGACC
GTTTTTGAGGAGATTATGAAACGACTAAAATTAAGgatctaaaaaaaaag
aaaaatatatattttcttaaaaaccttttttttgataTGACAAAATGATG
TAAATATATGTAAATaaattttagttatttttgcaaaaagagaTATATTC
AGAAATTTATGGCTTATATATTAATACTAtttcacaaaacaaaatacaat
tactattatttttttttacattgtCGCTATGAATGTTATAAATAGAATTT
ATTATTGTTGTAGCCCTGTAAAATTAGGTCGTTTAAAAGTATCTTTAGCG
TTTTGACTTAATCTACTAAAGATAAGTTTTTTTTGCTGTGGAAAAGCGTT
TTCGTagtaaaatgaaaatgttttcaaaaaggaGACTTAACCAATGATCT
GGTCAGATATTTGGCTCTCGTTTTTTCCCTTGTGTATTATTAAACatgta
aaattatgaaatatataaaattaagaagaattATTTTCACAAAATGTAAA
TAGGTTGATGTaaataacaataaaatgtaTGATAGATAGAACTCGTTAGA
GAAGAAATATGATTTGTATTAGATTGAAACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002178	XLOC_002178	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000038	supercontig	sc0000038:324904..329534 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	13.9038	4.98749	37.0925	33.2323	78.617	62.4234	53.9312	81.3754	31.419	62.0696	13.5194	2.57002	8.25442	12.0079	35.3492	49.2664	58.3621	43.2646	23.3481	39.2199	37.3874	32.5276	116.618	95.5165	0.930035	0

Blast

[Close]

BLAST of TCONS_00003879 vs. Swiss-Prot (Human)
Match: S2538 (Solute carrier family 25 member 38 OS=Homo sapiens GN=SLC25A38 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 2.772e-79
Identity = 130/274 (47.45%), Postives = 183/274 (66.79%), Query Frame = 2

Query:  158 FLFQPLDLIKTKLQAQVSTATSLQQAIVDGRLAPKHNYSQSSVASLLTQVVREDKVLGLWKGLTPSLYRTVPGVGMYFCTLHTMKSVL--DEEPTFYQNLMLGFTARACVGTAVLPMTVVKARYESGKYKYKTVSDGLRTIWRAEGLRGLFSGCTATILRDAPYSGIYLMFYSQGKKTMKDFASIDEKDTKV----HFICGINAGLMASLVTHPFDVIKTQMQLYPEKYRGTQHCIKVIFSQYGFAGFMRGLTPRCVRRTLISALSWTVFEEIM 961
             LFQPLDL+KT+LQ       +LQ +         H   +  + ++L +VVR + +LGLWKG++PS+ R VPGVG+YF TL+++K        PT  +++MLG  +R+  G  + P+TV+K RYESGKY Y+++   LR+I+ +EG RGLFSG TAT+LRDAP+SGIYLMFY+Q K  +      D+ D  +    +F CGI AG++ASLVT P DVIKT MQLYP K++     + +IF  YG  GF +G  PR +RRTL++A++WTV+EE+M
Sbjct:   43 LLFQPLDLLKTRLQ-------TLQPS--------DHGSRRVGMLAVLLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTALESVMLGVGSRSVAGVCMSPITVIKTRYESGKYGYESIYAALRSIYHSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIVPH----DQVDATLIPITNFSCGIFAGILASLVTQPADVIKTHMQLYPLKFQWIGQAVTLIFKDYGLRGFFQGGIPRALRRTLMAAMAWTVYEEMM 297

The following BLAST results are available for this feature:

BLAST of TCONS_00003879 vs. Swiss-Prot (Human)

BLAST of TCONS_00003879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S2538	2.772e-79	47.45	Solute carrier family 25 member 38 OS=Homo sapiens...	[more]

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TCONS_00003879 (transcript) - C. hemisphaerica