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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003868 ID=TCONS_00003868|Name=TCONS_00003868|organism=Clytia hemisphaerica|type=transcript|length=2682bp CGCAGAGCCTTTTGTATGTTATGTTGCAGTTTATTCCAAATTCATctttg aaatatataaaaagaaaataaacatgACTTACCAAAGCCACCGAAAGCAA ACGAAACGACAATAATAGGCTCTCTATCCCAAGCGTTCTTCAAGTAATTG AAAAGGTTTCTCATCGGACGAGCTACGGACGCCGCCATCTTGGAAATGGA AATGGAAAAGTGATTCGGCGTTTGTTCGCGACCGCTTTTTGAGACTCTCG GGGAGAGCTGGCAAGCGTTAGGGTAAAGAAATGCACGCATCTTGTGACTT AAAGAACAACTTCAGGTAAGGCGAAACAAACATGGCGACCGCAAATGGTA ATGCTGCTGCTGCAGGGGCTGAAGATGCTCAACTATCATTTCCACTACCA CCAACATTTTATTTNCTTTCTGTTATAGTTTTTTTAGTCTTTGCCACTTA AAGATACTCAATTAAGACTTTCAAAATGCTCAAGAAGCTGATCTACAACC TAATTAAAAACACCCTAGAATAAATCAAACACTAANTATACAAACGAAAA TATGAAAGCTGGAACTGTTCCGAAGCCACCTCCAGTGATAGATGGTGAAT ATTCAATGTTTGGACACACACAAAAGACTGATGATGAGATAATTCAACCT CTGGAAAGCCAAGGGCTGAAACGACTTTATGCagtcaaatcaaaaaagtt tgATCATATTGTTGAGATGAAAAAGTTGAACCACTCAATCTTGGTCAATT ATATGGAATTGTTGGATATCATGATAGATGCTCCTGGCTCAGAAGAGAGA GTTAAGAAAATcgaagaaataaaattgatgtttaTCAACCTTCATCACCT CATCAATGAATTCCGACCTCATCAAGCGCGTGAAACACTGAGGATCATGC TTCACAGACAGAAGTTACAACGAGTTGAAACAACTGAACGACTCAGAGAa aatattGAGAAAGCACGAACTATACTCAAAAATAGCTTAACAAACCTAAA CACCCCTTCAGCACCTTCGACCAGTGGTAACACTTCCAAAGAACAACAAG AGGTGTCCGAAACTAAACCTAATCTTTCGGACAACAAGAAAGTTATTTCA ACTGAGCACCAAGACACACTAGCAAGTCTCCAACATAAAATCATGGCTGA TATTTTGGATGGAATACCATGATATTTGGGGTGTCAGATGGGCAATAATG GACATAATGATCAAATATAAATGGAAAATTGGCTCAATGTCGAGAGGAGA AAATTGACACAAGAGAAGCTTTAAAAggaatttaaattcaaaatcttgTT GCGAGAACAGTGCATATTATTTCAGAAGCAAACAAACCCAAAATGGTCAg cttttgaatgaaaatgacCTTTGCAGTTTTTATTCTGGACAATGAAAGCG AGTTGATGCGTGAAGACTTCAGATTATATGTATTTTTATACGATAGCCAT AACCAATACTGAACTCgtttaaaacatttcaaaacttTCACAGATAAAAA CACATAAATATTGAGATATTTGCATTATATCATAATGAAAATAATGTGAA CCTCTGATGATATTATCCTCCTCGATTACTTGACTCATAATTCACGGAAA ATAGGacgactacacgtttttttataagaacaaactataagatcataagg cttcgatggtcaaaatgttaggaacaagttaagaacattttaaggcttta aagACTCTAGAATGGCCAATTTCTTTTccaaaatggacaaaaaatgctCA CAAGATGGTgagattaagaacattttaggcttaaaggtcaaaaagttaag aacatcctaaggcttcacAAATTTTGGATgcccttataaaaaaacgtgta acagttataagaacataagtcttCAAAGGCCAAAATAACAAGGAAAAGCT Aagcattttaaggttttaaaaactctgaaagttaagaacatccgaaggct tcaaaatgttGAATGTACTTAGAAAAAATATGTATTATGGAAACTAGGCT GATATAAGTTTAACGcggaaaaacattatttttttctattgtttatcaAT AAGATTGATTAGTCTTCAATGTTTTTACGCATATATACGGTATTCTAGAA ATATTCATAAGAATTCAAATCGTGTGGATAAAAagaatattcttttattt tcaatcagtCACGTACTCTCGAATGTTAACTccattaaaaaaataaagaa ttatttAATGAATGTGAAGCAGAGGGGTATTAGTCAGATTGAGGATAACA AGTGAAAAGAGGATCAGAAAATTAATTTCTGGTTTAACTTTTATcatcta catgttttttataataagaacattcaaaattgtTGAAGCCTTTCTATgtt aatttaactttttgagtttgttcttaaaatgttcttaatttcaccatttt atgagtGTTtctgtgcaatttcctaagaatttggatgttttagagtccat gaagctttaaaatgtccttaaactggtcttaacattttggccaccgaagc cttatgttcttatatagtttgttcttataaaaagacttGTAAATGAAAAG CTTTGCCTCTCACGTTGTAATGAATTTTCCACTTTTATATAATCTTATCT TTAATATAAATACACGAAAGAAGGGAAGATAATGAAGacaaagtcaaaac aaaaaaattttgttcgtGTGTCTTATCTTTGA Run BLAST on NCBI protein sequence of TCONS_00003868-protein >TCONS_00003868-protein ID=TCONS_00003868-protein|Name=TCONS_00003868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MKAGTVPKPPPVIDGEYSMFGHTQKTDDEIIQPLESQGLKRLYAVKSKKF DHIVEMKKLNHSILVNYMELLDIMIDAPGSEERVKKIEEIKLMFINLHHL INEFRPHQARETLRIMLHRQKLQRVETTERLRENIEKARTILKNSLTNLN TPSAPSTSGNTSKEQQEVSETKPNLSDNKKVISTEHQDTLASLQHKIMAD ILDGIP Run BLAST on NCBI transcript from alignment at sc0000038:167525..184581+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003868 ID=TCONS_00003868|Name=TCONS_00003868|organism=Clytia hemisphaerica|type=transcript|length=17057bp|location=Sequence derived from alignment at sc0000038:167525..184581+ (Clytia hemisphaerica) CGCAGAGCCTTTTGTATGTTATGTTGCAGTTTATTCCAAATTCATctttg
aaatatataaaaagaaaataaacatgACTTACCAAAGCCACCGAAAGCAA
ACGAAACGACAATAATAGGCTCTCTATCCCAAGCGTTCTTCAAGTAATTG
AAAAGGTTTCTCATCGGACGAGCTACGGACGCCGCCATCTTGGAAATGGA
AATGGAAAAGTGATTCGGCGTTTGTTCGCGACCGCTTTTTGAGACTCTCG
GGGAGAGCTGGCAAGCGTTAGGGTAAAGAAATGCACGCATCTTGTGACTT
AAAGAACAACTTCAGGTAAGGCGAAACAAACATGGCGACCGCAAATGGTA
ATGCTGCTGCTGCAGGGGCTGAAGATGCTCAACTATCATTTCCACTACCA
CCAACATTTTATTTNCTTTCTGTTATAGTTTTTTTAGTCTTTGCCACTTA
AAGATACTCAATTAAGACTTTCAAAATGCTCAAGAAGCTGATCTACAACC
TAATTAAAAACACCCTAGAATAAATCAAACACTAANTATACAAACGAAAA
TATGAAAGCTGGAACTGTTCCGAAGCCACCTCCAGTGATAGATGGTGAAT
ATTCAATGTTTGGACACACACAAAAGGtaaagaattttgaattttttttt
cgcaattttttgacttttttgtgtCCAGaggatctcaatcgaacggaatc
gacgatcgaaccagtcgaaccaaatcgaacgcaattgaccgattgaaatt
cgattgtcgaacgcaatcgaatNATCCAAATCTAGAGTACTTACGAatta
catattttcatattctaTTATCCTGAAACGTTGCATCCGCATATCTTTAA
CTTGTCAGATTTAAAGATTGGTTATCTGAAAGTACATTTCTGCAATTTAG
TTTCAGTAATTTTCACTAGTTTTGGAACCCTGATTTGAAACCTAAAAATT
GCTTATATTTTTTCCTTGCTAAGATTAAGttcaatttttgccaaaattgt
taaaaatttatcatttttgtgtCCAAAATACATGCAACAATTGTTATTTC
TATCTGATAAATTCACTTTCTCATGAAATTGTCTAAAATCTAACTTGCTC
GGTTCCAAGGGCAGCAAACCATTTTCGTAATTTTCTGAGTGTACCAGTGT
TAcaaatttatcaatattttgttaACGCTTTTGTAAATATTTAATATATG
GCTAAATTAAACATagtaataaattatttttcattttggggGATTTCAGA
CTGTTTAGACTTTCATTGAATTGATAAAAAGttaacaatgttaatttttt
atcatatctttgtcaaaaatgaagtttttagtttttcgaaaaaaaatatt
taaagaacgTAGTAATATCTAACTTCTGCTAAATTTTCAACCCATgacaa
ttaaaattcagaaacttattaacaaaacaaatttttggacaattttatgA
TGTCCACAATGGTGTCTCATATTATTGATCGTGTccttacctgaatcaag
ttcgcaagacaataataattaaaactaaaagttggaaacaaaataaaacg
tgcagcagccaaaatcaaccaacgaaaatttgtcattcaattcccgagac
agcgcttcgatttttaaggccttgtttatacgctaaagtaaaacaaTTAC
ATTTTTCAATTAACCAACAACGagcaattattttattttttaacgaTATA
TTTCGATCTATTGATCATCTTCAGgtctaaaattcaataaaaacaagatt
ataaaaatctcCGATAAAAATGTATATGTTCACATATCTACAGTAAAAAC
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTGGTGGACTACCC
ATTGCTAACCCATCAATTTGTCTGAATAGACCATCATTTGTTGACATTAT
AACATTCTTGCTACAAACATTTAGCAGTTTTGTAAACGTGTTCTTATTAA
TAGGTGGTTTTTTTAGCGTACCGTCGTAGAGCAAGTTTGCGCAAACTTCA
ATGGCTTCGTCGACTGGAACATTTGTATATAATGAGACAACATCAAAACT
GACCATCTCTTTGTTATCTTCCAGGACAATATCAGCTAACTGGTCAGCAA
TTTCTTTTGTAGATGAGTTGATTTTGCATTCTGGAACAGCAGATAACCAG
TCAGCTATTTGTTTTGCAATGTTGAAGTAGGGTGATCCTGGCATAGATAA
TACTGGTCGAATTGGTATACCGTTCTTATGTATTTTTGCCAGTCCGTATA
ATCGTGGAGGTTGACTTCCTATCGGCTTTAGTTTTAGAAAGAGAGCGTCA
CTAATTTCATTATCTCTTTTAAGTTTTTCGAGCAACTTACATATCTTTTC
CTCTTCCTTTAAAACCGGGTTTTTGGCGTTCTTTCGTGTCGATATAACCT
TTTCAAATTGGGGCAAAACTCAATATGTCCATTATTTTCTGGTCGTAAGT
GGTGATCTTCATCAAACAAATACCTACTCCTTTATCAAAAGGAACCGCCA
ACAGTTTATTTTCTTTCAGGTAACGTTTTGTAAGGGATAAGTTACGGGTT
GTATGTTGTTTCTTGCATTTCTTTATATAAGCCAGTGTTTTTATGTTGAT
GTCAGTAATGATGGCGtcttcaacgttcttttctttgcaATGGTTTATCA
AACCATCGAGTTCAGCAAGAATATCGTTTTGATCAAATCTGTCCAAAATT
GAATTCTTAGGACCGAGACAATtatgcacatgtaaatgggtcattgtttg
aggtccggcaaaatttccgggagatagcctatccggcagtgcggggatct
aggtgggttccgcctcccccgtagatctttttcttgggaagttgatcttc
aaattagttttcaaggttggcttggctcaaattttttcatctatggcaca
aattttaagcaatttctcaaagtttttgaaaatgcttatttcattaaaaa
gcgccgggttattttttcatgaatccctttagaagttttgcggcgcattt
ttttgcttgagagtcaagtaaacgatatagcgctttcgcagcatttatct
ttgatacgcattttggcgggacgctagtgtggctaactgttgaataatta
tgtagtccagcagaaaaacaatgataaaaccatacataattattacaata
tgcatgatacagtaattatgcatggctcttcattgtttttatggccggac
taccgtgagattgggtaacttgcatcagtggaggctaacatgcatagccc
tcaaatgaaagacctggctggtcattaaaatacaactacgcagctcctcN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTG
GTTTTTGGGTCATTGGAATCACGGAAACGTGATCTTTCACGTGATCTTAT
TTTCATATTGCGCAAATAGTCTGCTCTGAAGTAAATTTGTGAAACGTAAA
GAATTCTCCTAGTTTAGGTAGCGTTCTCTTAAATAAGAGactgaaaatct
cctaaataaggtaatcctctaacttgggtattctcttatttagggcataa
tcctCGACTGTCTTAGCGtttgctttgatttttgtttgagaCGATCTTCT
tataaatagaataaaaaactttcgaagcgagCAGTACTAAGTGCTCAGTA
GAGTTCCCAGCCCAGTTGGCCACCAGTCTAGTTTGCGACCGAATGTTTTT
GANcgatcgtcgattccgttcgattgagatcgtctggttgtGTCCATCCA
TATGCTGATCATGGATGGTATATTAGAGTCCCCTGACCAGTTGGCAACTG
AAACTGTTTAACTCAATTTTTCAACttatatttaacttttttgaaaatcc
ttttttaccaatgttttagtcagagagtctGCCGTAAGTATCTTCGCTTC
TTGATATACTGATGGCGCTctattttttccaccatcagattatcaaaggc
aaaaaatagtTGAGCTCCAGACCCTGGACTACCAATGTTTAGACTTTTAC
AGTAACACACTCTTACAGTCGaggattatgccctaaataagagatatact
ctatttaagagaaggtctcttaagtaggagatttctttctcttaactAGG
AGACTNacccatttacatgtgcggaattgtttttactttaacgtataaac
aaggccttaaaaatcgaagcgctatCTCAGAAATTGAATGACAaactttg
gttggttgattttggctgctgcacgttttattttgtttcaaactttcaag
ttttaattaattgtcttgctaacttgattcaggtaactcgcATCCTTGTT
GTTTCAAATACATTACAGGAACATTTGGTGAGTTCCTGTACGCAGCCGCA
ATCAAAGAAATCATAACcacactcataaaaaaattgtgtttgtgtctttt
tttaccgttttttgcctAGATAATATNCCTTTCTTCGTTAATTTTTGGCC
TTCTCATCATTTTGCGCAAGTTTTGAACTTCATAGATCGACTcgtttttt
tctcctttctagcaaaatttggttgagttcTGCTTTTGTTTTGTGGACCT
AGGATGGTTAGGGTCTATCAATCTAAAGGCCGATNCATGATaaagcaaac
atagtaagtataagcagactgtgccttaaattggctgtaaaaaattATGC
GTCGCTagaaatttcttcaactttcaacaatgatagaacacacctattta
aaaaaaattaaccagcgcatttttcatctttctaggggccgtcgacaaac
gattttccttttttttaacgacttctggccgtaaggggtgggagggggtc
actgcaatgccgataaaaaagtttaaaaaaaatggaaagtctcacttaca
aatttcatcagtccaaaaagtagaaacatgtGAAGAAAAGCTAAGACAAA
AAAAACCACACGACATTAACACCTTATTCCCAATCACCAATTAATGCTTC
GACGAGAAAAATGACTGAGGAAAGTCGTTTGTCAACGGCCCCctacttct
tcatcttccatgaagctctcaaagtcaaatagaattaagcacataagata
ttcttataattgtgaaatgtcATTCGCGATTTTgctacggtggagtgcat
gacgtaactcgcgcggcaacaaactcgccttctgttggctggtcatattg
ggcgttttggcgttaccaccctcgaagcagtGGGCGCCTTCGTCATTccg
caactctgtccaccattttaaatgagttaacaatagatccaaaagggtgc
cctcatcaagaaagatcatttgctttggtctccggctttgggaagtagta
atgttttcgattgttttcaatggaaaatggtaagaaacttaagtttacaa
gtgtcattcagtttttgctggctgatagaatggTAGGATCCTgtatggtt
tccctaactgccTAACTTTCCCTAACATCTGgctgatgttttttttctga
aagcttgatttcctagtgtggctaactatcagtggaggctaacatgcata
gccctcaaatgaaggacctgtctggtccttaataaaatacaaagttaaat
caaaacaaaaatggtagagtaccGGCTGTGAGagaagctgcgtagttcat
atgttttgaaattttgctgcttagattggtcagtcatttaagggctatgc
atgttagcctccactgatgcaagatacccgatctcacggtagtaccctcc
cggcgctccggaaactTCCGGAGTTTTCCCAAGCAGCTTtttaaaaaaca
ctatttttctctccggaaagttccggagcaagtgatttttaacacgttct
aaaaacctgtttttttttaacatggtcagttagggaaaccatccaggatc
ctgccattctataagccagcaaaaactaaatgccacttgtaaagttaagt
ttcttactattttccatcaaaaacaaccaaaaacattgctacttcctgga
gaccaaaacaaattatcttccaagattatggcgcccttttggatctattg
ttatggccatctaaaatggtggaaagagttgggGAAAGACAGGGGCAACC
GCTAGCTAGctaacgcccaatatgatcttccaacataaagcgagttagtt
accgcgcgagttacgtcatacactccaccgcagcgcacaacgaacggtgt
ttTAGTGAATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTtttagtgaatatcaataattataagaatatcttatgtg
cttaaattcagtaaactttgagtgcttaattgaatattaagaagataaga
agataaaaaatgcgctggctAATTTTAATTGTAACAGTtgggtcaatcat
tgctgaaagtttgaaaaaaaatttccgacgcaaaaaaaaacttcagccaa
ttaaaggcacagtgtgcttatatttactatgtttgctacattgtctaggc
taaaaaaagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaac
tcgccaaatgttcctaactgatggttacaaaaaatattgatatgaTGGCC
Cagccattaatgaaattgaatttgtcacatggtcgaaatatcgaaaaaat
ataaaaacatgaGGTTTCACTTCCATGCGAATGCACAGTTAGTTTTCACA
TGATTAGCACAGCGAGCGCTATCGTAATTATATCGCGGATATCTTCTCCG
GAAAGTTCCAGAGTTCCGATAACATGTggcatgtcacaataactttcatt
GATAGCGCACCCTTTTTAAAGGGGATCTAAGGTCAGAAAATTCATGTacc
tcatttttttacataggaAAGCTCTgatagaaacaaaaatattgaaaaaa
gaacgaacttaaaatcttttaaattcatTAAGTTATTGATACTTGAATTT
TCCGtttctttgagaaaaagaggattttgtgacgtcatggTTGCGCTTTA
GTTTCATAAATCAGTCGTTGAACAGGCACATTTTTAGAAACAGCGCCTTG
TAATGGCTTCAAAAAAAGCTGCTTTTGTTGGATAAAAAAGATATCTTTGT
AATCGCACTTTaaagaacaaactttttgataggTATTCCAAAGTATCCCA
TCCATCCTGCCGAATTTTAGATGCAATGAATAAATCATAATAAAGCCTTA
TAGAAATTTCTACGATTGCCCCTCCTGgattcactaaaatttggtaaaaa
cagcctttttagtgggAAAATAGTTGAAAAAGTACCCTTCTTGACCACTA
ACGGACACTGTcctacctttttagaatattgactgaaacaattaattaaa
actttgaaacaaaagaaaatgactgattgccccgcaggggcttttgttgc
ttcacgtagcggacttgctcgccagaaaaatattcatgttgtttcttcag
atttttttcgtgatatttttttaactttcgtgcattttacacagagcact
tgtgaaagcgagaaatcgaaagtcccgTTTGCACTGCCAGTCTACGCAGC
TTTAAAggtttcacaaacaacaaacagatcacaagatttttgcttggtta
atatcAAACCTTATACGATTGTCAGAAATGGATGACATCTTCAATGTACA
ATGACAGTGTGTTTTACACACACAGTCTGACAGTGTCTGGACAGTTTTAT
ACGCTGCTCTACCGAAACCCTACTGAACCCAGTACCCTATATGGATATTG
CATGcgccgaaagtaatttttcaaagagtaatccttgcgccaaaacgtgc
caaaaactggtaccaacattgagtttcttacagaaggtttagtgagtgag
acatgctaatgagaatatactatgactaacatgaactgattaattctcgt
ggacatttgaagcacagtgttacagcaaaataatggttgagcatggggag
cagcgagcagaaaaatgtaaacagaagcggaacaaaagccaaaaaaacga
tggattatggagtatttgatgctatattgtgaataattttttacgccaat
attgaagttttagcaaactttgaaaatgatgttTATGCCACTGTGCCAGA
ACGGTACTTCGATGCGATGTGTATGTACCCCGAAGATTTTCAGCCCTAGT
TACCTGAATTCCAGACTGGGACAAAACATTTCAAGCTTCTAAGAAAAGCT
TATTATTACACACGCTATTGGAGTAATTTCAATTTGNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNTTGTTAAActagtgaagatcttggtggtagtagc
aaatttgctttatatttatattcaaaTAGAAGTGGCTTTCTGTAAGTTGC
TCCATCGGaaagtatttttaaatttaaaccaatgagattgccgcatatga
ttaaatttttagaataaGGGGAATTGGAATTATTACAGAGGAAATGGGCA
GAATTCCTTTTGTTATCGTGTAATTCTTTGTCAATTGAAATTATTGATTG
TTGTCAGATCAAGCGATAGAGAATTTAATAACATTCTCAGAAATTTATAC
TTtaatactactactactactacaaCATTTAATACCGAAATATTCGTGGA
TTGAAATGCATTGATAAAAGAGTCAAACGTGTGGTTTAGAAGGTATCCGC
ACACCTTAATTTATAATTAAAGAATTGATTTGAATAATGAGTTTGTTCTA
AATCGTCTTTTCTGAAAAAttcatttagatttttttttgacttcaaatac
atcaaatggaaacaaatttgggttgatgatgATATCACAAAGTTTTGCAT
TTACTGCTGACCAGTTTACTGAAAAGAGCAAATTAAAATTGATCAAATAA
agatttcaattctgttttgatttatcaaaggccaaaaagaatatctttta
cGTTTGACTTTTAATAAAGCCATTGCTGAAGGTATGTTTGTTGATCCTTC
TAGGCATTGAGGTTTTCGCCAAATTCAAAATTGTGAATTTCTCTTTTAGA
CTGATGATGAGATAATTCAACCTCTGGAAAGCCAAGGGCTGAAACGACTT
TATGCagtcaaatcaaaaaagtttggtatgatactttttaaaaataaatt
tgtatttaggcgaaaataaaaaaaatgtagtgtttccggaatgcgggtga
aagaaaaaagctctcatggccggccggaaaattttttactttgctatttt
tgataacttaaagatcgatgaaatagaactttaaagataacttttatgta
caaacaaacaatatgaagtaagccctgaatactaatgtatcaactactaa
caaaGTCTGCGGCTGGGTCAGAAAATTATTCCTTTTCACCAGGCTGGTTT
CTggaaacacatttttttatttttgcctgtgtttatatattttttatagg
ttttttattttatatattttgtttataGGTTCTTGAAGAATTATCTATCT
TTTTCTTCTGTACAAGAAGTTTGTGGAACTAAATTAAAATGCTATGATGC
TTAGTCAAAAGATTTCTTTTATACTTTCTTTACTTCAGATCATATTGTTG
AGATGAAAAAGTTGAACCACTCAATCTTGGTCAATTATATGGAATTGTTG
GATATCATGATAGATGCTCCTGGCTCAGAAGAGGTATTATCTTTCGTTAC
CTAgatcaaaactattttttaaGTCAGCATAGCACTGTATATACCCNCTC
AGAAGAggtattagcgagtttatgtatgtgtgtttttcagcgacggagac
ggtaaggttctaatttgactagatcatgaccaactgagggcgacggtaaa
tcagcacttttaccgtcctcgattttgcttTATTCGAGCTACTCCATCTC
ATGtccagtttttttcattttccagtgGGTAAGAGACTTATTTTAGTTTG
TCCACTGTCACTTTAAtgatttgttcaatttttttgtgcaaaattttgcc
atttttcagggggtatCCACATATTTGCAAAACAtgttgacttgaaaagg
tttgtctacccccccccccttccctgTATGGAACTTTAATGGAATGGCAC
ATTATTGAAATGTTTCCATAAATTTGATCGAAAGCACAGCACAAGTTGAA
GAAAAAGTCATCAACTTCTCAAGTTTGAATTTGAATATATTCACCTCAGT
TACATTAACTGTATTTATATGACACTTTCCACTTGCCTTTTAGAGAGTTA
AGAAAATcgaagaaataaaattgatgtttaTCAACCTTCATCACCTCATC
AATGAATTCCGACCTCATCAAGTACATATAACTTTCGTCTGCTTTCTTCT
TTTACACGACTGTCTTATTGTGgtcgggtagctcagtcggtagaacAATC
GCCTTACAATCCAAGGGTTGTGGGTTTGATCTCACAGGCTGTCAGCCCTG
GTGGAAGTTCTTCCCACAGTGGGGGTGAAAAGTTCTATCGAAATCCTATT
AGGGATGGAATCTTTAATATTCTCAGGTCAAAAAATTCATTGGTGATGCC
TNATAGGGATGGAATCTCTAATATATTCTCAGGTCAAAAAATGCATTGGT
GATGCCTTTGGAGTGGATTtctttggacctacctggaggtcctataaatt
aacctgtgttcgtccgtccatccgtttgtccgttcgtctgttaccaactt
ttctcaggattgaatcataggaattttgtgatttttggtacgaaggtgca
aaatggtgattacccaaatgtgacagagcccgatttttgataaagaaatt
tgccccaaaatagggttttttggacttgaaaaatagtttcattagttttt
cctaatgaTTTGTACAAAGACGTAGAATTACAATGTGCTAAATatgaaaa
aactgattttttgaaaaaaaaaattttaaattttaaattattcagtTTTT
GTTTCTATATTCCCTTTATTAAACTTtcattattcgttttataaacagGT
AGGTTCGTAAAAGTTtcgcttgtttactttgaattttaaatggcgatgaa
aacaaagtcgattttccagtggggctgaaatcgTAGGgcattttcccacc
ggggaaaAGTATTTGTTCAATAATCAGTTCTTTTTAAAACGGTTTCTNTC
ACCGGGGACAAGTAtttggtcaattttccagtgggtagcGGGTCCCACCA
TTGTGTTATAATCagttatttttaaaactgtttCTAGAAAACTGAGGCAC
TTCAAGGAAATCCAGGATTTTTATTGGCCTGTTCTTACCATTATAACCTC
TTGAAAATTCTCTCGTATTATTATATCTTTTATTTGGTTATTTTCTATTG
ATATATTTATATCATCATTAGGCGCGTGAAACACTGAGGATCATGCTTCA
CAGACAGAAGTTACAACGAGTTGAAACAACTGAACGACTCAGAGAGTAAT
TCAATAcattttgtcttcattttttcttgtgttggcaGAATCTACAAAAA
TCAATATGTAGCAAATCATATCTTGTCTTGCTTAACAGACAAAAAGTTGT
ATTGAATTTGTTGCGTCTGTCTACGACTGTTGTTTCTTGGTCACTCTTTC
TTCGGACTACCATGATAGATGGCAGATTTTTAGCAAGAgctaatttcaat
tcttttttgcaaaatttttgccattttctctTTCTGACTGGAAAAATAAA
TCGTACTCTAGATACtctatatttgataaaattattattttcatgACTAT
TTCCATATGGTTTCAGgctcattttcaaaattaaatccacgaaaaaaaaa
ttaaattgctGAATCCCGAGTACAACTTTTCTTCGagctcgcgaaattaa
atctcgCAAATATTAGATATTAAAATCTGATCAAAAGTAATCCGAATCAA
AATGGGCGATTGCAGTCGATCATTACTTTAATTTccctaattttcttttt
atttcagaaatattGAGAAAGCACGAACTATACTCAAAAATAGCTTAACA
AACCTAAACACCCCTTCAGCACCTTCGACCAGTGGTAACACTTCCAAAGA
ACAACAAGAGGTGTCCGAAACTAAACCTAATCTTTCGGACAACAAGAAAG
TTATTTCAACTGAGCACCAAGACACACTAGCAAGTCTCCAACATAAAATC
ATGGCTGATATTTTGGATGGAATACCATGATATTTGGGGTGTCAGGTATT
CCCTTATTTTCGTTTCATTCATTGATTATGTGAATATGATATGTTTTATA
TATAAAATCTATCACATTTGGGTTAGCTTTGAAGTGTCCCTTAAAATCGG
GAGGTATTGGTCCAACCATCAAAGGCGTGGTACGATACTGTAGGTGGAAA
GCCGTGGATTGGGGTGATGGATTTAAATTGCATATGAAATGAAATAGTAT
ATGAGTCAAATGGTTTATTAAGGGCTCAGATATATTAATAAAATATGGAT
ATCATTTTAAAGATGGGCAATAATGGACATAATGATCAAATATAAATGGA
AAATTGGCTCAATGTCGAGAGGAGAAAATTGACACAAGAGAAGCTTTAAA
AggaatttaaattcaaaatcttgTTGCGAGAACAGTGCATATTATTTCAG
AAGCAAACAAACCCAAAATGGTCAgcttttgaatgaaaatgacCTTTGCA
GTTTTTATTCTGGACAATGAAAGCGAGTTGATGCGTGAAGACTTCAGATT
ATATGTATTTTTATACGATAGCCATAACCAATACTGAACTCgtttaaaac
atttcaaaacttTCACAGATAAAAACACATAAATATTGAGATATTTGCAT
TATATCATAATGAAAATAATGTGAACCTCTGATGATATTATCCTCCTCGA
TTACTTGACTCATAATTCACGGAAAATAGGacgactacacgtttttttat
aagaacaaactataagatcataaggcttcgatggtcaaaatgttaggaac
aagttaagaacattttaaggctttaaagACTCTAGAATGGCCAATTTCTT
TTccaaaatggacaaaaaatgctCACAAGATGGTgagattaagaacattt
taggcttaaaggtcaaaaagttaagaacatcctaaggcttcacAAATTTT
GGATgcccttataaaaaaacgtgtaacagttataagaacataagtcttCA
AAGGCCAAAATAACAAGGAAAAGCTAagcattttaaggttttaaaaactc
tgaaagttaagaacatccgaaggcttcaaaatgttGAATGTACTTAGAAA
AAATATGTATTATGGAAACTAGGCTGATATAAGTTTAACGcggaaaaaca
ttatttttttctattgtttatcaATAAGATTGATTAGTCTTCAATGTTTT
TACGCATATATACGGTATTCTAGAAATATTCATAAGAATTCAAATCGTGT
GGATAAAAagaatattcttttattttcaatcagtCACGTACTCTCGAATG
TTAACTccattaaaaaaataaagaattatttAATGAATGTGAAGCAGAGG
GGTATTAGTCAGATTGAGGATAACAAGTGAAAAGAGGATCAGAAAATTAA
TTTCTGGTTTAACTTTTATcatctacatgttttttataataagaacattc
aaaattgtTGAAGCCTTTCTATgttaatttaactttttgagtttgttctt
aaaatgttcttaatttcaccattttatgagtGTTtctgtgcaatttccta
agaatttggatgttttagagtccatgaagctttaaaatgtccttaaactg
gtcttaacattttggccaccgaagccttatgttcttatatagtttgttct
tataaaaagacttGTAAATGAAAAGCTTTGCCTCTCACGTTGTAATGAAT
TTTCCACTTTTATATAATCTTATCTTTAATATAAATACACGAAAGAAGGG
AAGATAATGAAGacaaagtcaaaacaaaaaaattttgttcgtGTGTCTTA
TCTTTGA Coding sequence (CDS) from alignment at sc0000038:167525..184581+ >TCONS_00003868 ID=TCONS_00003868|Name=TCONS_00003868|organism=Clytia hemisphaerica|type=CDS|length=3726bp|location=Sequence derived from alignment at sc0000038:167525..184581+ (Clytia hemisphaerica) ATGAAAGCTGGAACTGTTCCGAAGCCACCTCCAGTGATAGATGGTGAATA TTCAATGTTTGGACACACACAAAAGACTGATGATGAGATAATTCAACCTC TGGAAAGCCAAGGGCTGAAACGACTTTATGCagtcaaatcaaaaaagttt gATCATATTGTTGAGATGAAAAAGTTGAACCACTCAATCTTGGTCAATTA TATGGAATTGTTGGATATCATGATAGATGCTCCTGGCTCAGAAGAGAGAG TTAAGAAAATcgaagaaataaaattgatgtttaTCAACCTTCATCACCTC ATCAATGAATTCCGACCTCATCAAGCGCGTGAAACACTGAGGATCATGCT TCACAGACAGAAGTTACAACGAGTTGAAACAACTGAACGACTCAGAGAaa atattGAGAAAGCACGAACTATACTCAAAAATAGCTTAACAAACCTAAAC ACCCCTTCAGCACCTTCGACCAGTGGTAACACTTCCAAAGAACAACAAGA GGTGTCCGAAACTAAACCTAATCTTTCGGACAACAAGAAAGTTATTTCAA CTGAGCACCAAGACACACTAGCAAGTCTCCAACATAAAATCATGGCTGAT ATTTTGGATGGAATACCATGAATGAAAGCTGGAACTGTTCCGAAGCCACC TCCAGTGATAGATGGTGAATATTCAATGTTTGGACACACACAAAAGACTG ATGATGAGATAATTCAACCTCTGGAAAGCCAAGGGCTGAAACGACTTTAT GCagtcaaatcaaaaaagtttgATCATATTGTTGAGATGAAAAAGTTGAA CCACTCAATCTTGGTCAATTATATGGAATTGTTGGATATCATGATAGATG CTCCTGGCTCAGAAGAGAGAGTTAAGAAAATcgaagaaataaaattgatg tttaTCAACCTTCATCACCTCATCAATGAATTCCGACCTCATCAAGCGCG TGAAACACTGAGGATCATGCTTCACAGACAGAAGTTACAACGAGTTGAAA CAACTGAACGACTCAGAGAaaatattGAGAAAGCACGAACTATACTCAAA AATAGCTTAACAAACCTAAACACCCCTTCAGCACCTTCGACCAGTGGTAA CACTTCCAAAGAACAACAAGAGGTGTCCGAAACTAAACCTAATCTTTCGG ACAACAAGAAAGTTATTTCAACTGAGCACCAAGACACACTAGCAAGTCTC CAACATAAAATCATGGCTGATATTTTGGATGGAATACCATGAATGAAAGC TGGAACTGTTCCGAAGCCACCTCCAGTGATAGATGGTGAATATTCAATGT TTGGACACACACAAAAGACTGATGATGAGATAATTCAACCTCTGGAAAGC CAAGGGCTGAAACGACTTTATGCagtcaaatcaaaaaagtttgATCATAT TGTTGAGATGAAAAAGTTGAACCACTCAATCTTGGTCAATTATATGGAAT TGTTGGATATCATGATAGATGCTCCTGGCTCAGAAGAGAGAGTTAAGAAA ATcgaagaaataaaattgatgtttaTCAACCTTCATCACCTCATCAATGA ATTCCGACCTCATCAAGCGCGTGAAACACTGAGGATCATGCTTCACAGAC AGAAGTTACAACGAGTTGAAACAACTGAACGACTCAGAGAaaatattGAG AAAGCACGAACTATACTCAAAAATAGCTTAACAAACCTAAACACCCCTTC AGCACCTTCGACCAGTGGTAACACTTCCAAAGAACAACAAGAGGTGTCCG AAACTAAACCTAATCTTTCGGACAACAAGAAAGTTATTTCAACTGAGCAC CAAGACACACTAGCAAGTCTCCAACATAAAATCATGGCTGATATTTTGGA TGGAATACCATGAATGAAAGCTGGAACTGTTCCGAAGCCACCTCCAGTGA TAGATGGTGAATATTCAATGTTTGGACACACACAAAAGACTGATGATGAG ATAATTCAACCTCTGGAAAGCCAAGGGCTGAAACGACTTTATGCagtcaa atcaaaaaagtttgATCATATTGTTGAGATGAAAAAGTTGAACCACTCAA TCTTGGTCAATTATATGGAATTGTTGGATATCATGATAGATGCTCCTGGC TCAGAAGAGAGAGTTAAGAAAATcgaagaaataaaattgatgtttaTCAA CCTTCATCACCTCATCAATGAATTCCGACCTCATCAAGCGCGTGAAACAC TGAGGATCATGCTTCACAGACAGAAGTTACAACGAGTTGAAACAACTGAA CGACTCAGAGAaaatattGAGAAAGCACGAACTATACTCAAAAATAGCTT AACAAACCTAAACACCCCTTCAGCACCTTCGACCAGTGGTAACACTTCCA AAGAACAACAAGAGGTGTCCGAAACTAAACCTAATCTTTCGGACAACAAG AAAGTTATTTCAACTGAGCACCAAGACACACTAGCAAGTCTCCAACATAA AATCATGGCTGATATTTTGGATGGAATACCATGAATGAAAGCTGGAACTG TTCCGAAGCCACCTCCAGTGATAGATGGTGAATATTCAATGTTTGGACAC ACACAAAAGACTGATGATGAGATAATTCAACCTCTGGAAAGCCAAGGGCT GAAACGACTTTATGCagtcaaatcaaaaaagtttgATCATATTGTTGAGA TGAAAAAGTTGAACCACTCAATCTTGGTCAATTATATGGAATTGTTGGAT ATCATGATAGATGCTCCTGGCTCAGAAGAGAGAGTTAAGAAAATcgaaga aataaaattgatgtttaTCAACCTTCATCACCTCATCAATGAATTCCGAC CTCATCAAGCGCGTGAAACACTGAGGATCATGCTTCACAGACAGAAGTTA CAACGAGTTGAAACAACTGAACGACTCAGAGAaaatattGAGAAAGCACG AACTATACTCAAAAATAGCTTAACAAACCTAAACACCCCTTCAGCACCTT CGACCAGTGGTAACACTTCCAAAGAACAACAAGAGGTGTCCGAAACTAAA CCTAATCTTTCGGACAACAAGAAAGTTATTTCAACTGAGCACCAAGACAC ACTAGCAAGTCTCCAACATAAAATCATGGCTGATATTTTGGATGGAATAC CATGAATGAAAGCTGGAACTGTTCCGAAGCCACCTCCAGTGATAGATGGT GAATATTCAATGTTTGGACACACACAAAAGACTGATGATGAGATAATTCA ACCTCTGGAAAGCCAAGGGCTGAAACGACTTTATGCagtcaaatcaaaaa agtttgATCATATTGTTGAGATGAAAAAGTTGAACCACTCAATCTTGGTC AATTATATGGAATTGTTGGATATCATGATAGATGCTCCTGGCTCAGAAGA GAGAGTTAAGAAAATcgaagaaataaaattgatgtttaTCAACCTTCATC ACCTCATCAATGAATTCCGACCTCATCAAGCGCGTGAAACACTGAGGATC ATGCTTCACAGACAGAAGTTACAACGAGTTGAAACAACTGAACGACTCAG AGAaaatattGAGAAAGCACGAACTATACTCAAAAATAGCTTAACAAACC TAAACACCCCTTCAGCACCTTCGACCAGTGGTAACACTTCCAAAGAACAA CAAGAGGTGTCCGAAACTAAACCTAATCTTTCGGACAACAAGAAAGTTAT TTCAACTGAGCACCAAGACACACTAGCAAGTCTCCAACATAAAATCATGG CTGATATTTTGGATGGAATACCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003868-exon-sc0000038-1491911889:167525..168150 | TCONS_00003868-exon-sc0000038-1491911889:167525..168150 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1510915933:167525..168150 | TCONS_00003868-exon-sc0000038-1510915933:167525..168150 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1575043694:167525..168150 | TCONS_00003868-exon-sc0000038-1575043694:167525..168150 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1491911889:179674..179749 | TCONS_00003868-exon-sc0000038-1491911889:179674..179749 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1510915933:179674..179749 | TCONS_00003868-exon-sc0000038-1510915933:179674..179749 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1575043694:179674..179749 | TCONS_00003868-exon-sc0000038-1575043694:179674..179749 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1491911889:180213..180307 | TCONS_00003868-exon-sc0000038-1491911889:180213..180307 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1510915933:180213..180307 | TCONS_00003868-exon-sc0000038-1510915933:180213..180307 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1575043694:180213..180307 | TCONS_00003868-exon-sc0000038-1575043694:180213..180307 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1491911889:180868..180945 | TCONS_00003868-exon-sc0000038-1491911889:180868..180945 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1510915933:180868..180945 | TCONS_00003868-exon-sc0000038-1510915933:180868..180945 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1575043694:180868..180945 | TCONS_00003868-exon-sc0000038-1575043694:180868..180945 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1491911889:181996..182069 | TCONS_00003868-exon-sc0000038-1491911889:181996..182069 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1510915933:181996..182069 | TCONS_00003868-exon-sc0000038-1510915933:181996..182069 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1575043694:181996..182069 | TCONS_00003868-exon-sc0000038-1575043694:181996..182069 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1491911889:182582..182819 | TCONS_00003868-exon-sc0000038-1491911889:182582..182819 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1510915933:182582..182819 | TCONS_00003868-exon-sc0000038-1510915933:182582..182819 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1575043694:182582..182819 | TCONS_00003868-exon-sc0000038-1575043694:182582..182819 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1491911889:183087..184581 | TCONS_00003868-exon-sc0000038-1491911889:183087..184581 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1510915933:183087..184581 | TCONS_00003868-exon-sc0000038-1510915933:183087..184581 | Clytia hemisphaerica | exon |
TCONS_00003868-exon-sc0000038-1575043694:183087..184581 | TCONS_00003868-exon-sc0000038-1575043694:183087..184581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000038 | supercontig | sc0000038:167525..184581 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR009244 | Mediatior_Med7 |
Vocabulary: Molecular Function
Term | Definition |
GO:0001104 | RNA polymerase II transcription cofactor activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006357 | regulation of transcription from RNA polymerase II promoter |
Vocabulary: Cellular Component
Term | Definition |
GO:0016592 | mediator complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
cellular_component |
GO:0016592 |
mediator complex |
molecular_function |
GO:0001104 |
RNA polymerase II transcription cofactor activity |
Blast
BLAST of TCONS_00003868 vs. Swiss-Prot (Human)
Match: MED7 (Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 8.233e-50 Identity = 83/164 (50.61%), Postives = 125/164 (76.22%), Query Frame = 3
Query: 537 YTNENMKAGTVPKPPPVIDGEYSMFGHTQKTDDEIIQPLESQGLKRLYAVKSKKFDHIVEMKKLNHSILVNYMELLDIMIDAPGSEERVKKIEEIKLMFINLHHLINEFRPHQARETLRIMLHRQKLQRVETTERLRENIEKARTILKNSLTNLNTPSAPSTSG 1028
YT+EN++ G PKPPP I Y MFG+ + DD II+PLESQG++RL+ ++ FDH E++KLN SIL+N+++LLDI+I +PGS +R +K+E++KL+F+++HHLINE+RPHQARETLR+M+ QK QR+ET ER ++++E+ +++N L +L S +G
Sbjct: 21 YTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPMQ---FDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSEAG 181
The following BLAST results are available for this feature:
|