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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003865 ID=TCONS_00003865|Name=TCONS_00003865|organism=Clytia hemisphaerica|type=transcript|length=384bp
CTATTGGTCACTCTAGAACATATAGAACAGGTTCTAGGTAATAAAACAGC
TCTGGAAACCCAACTGGAAAACGAGATGCGACACAAAGATCTACTATTAG
TTATTATCATTGGAGTGGTAGCTGGCTTTGCCATCTTTTTATTGATTATC
ATCATCACCATTGCCATCTTAAGAAGatCACGAGCAAAGGAGAACGAGTC
AATTTCACCTACGTCATCAACACATACGAGCACGTCAACATTTTACGATA
CAGATATCGTTTACGCGAATCCAGCTAGTATGAACCTCAGTAAGTCAATG
ATTTAGCAAAATTATCACGTATATTTGGGGTGGTTTGTCATCTATTAGAT
TCTGGTTATTAGTGAGATAATGATGCCCCCGTCT Run BLAST on NCBI protein sequence of TCONS_00003865-protein >TCONS_00003865-protein ID=TCONS_00003865-protein|Name=TCONS_00003865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
LLVTLEHIEQVLGNKTALETQLENEMRHKDLLLVIIIGVVAGFAIFLLII
IITIAILRRSRAKENESISPTSSTHTSTSTFYDTDIVYANPASMNLSKSM
I Run BLAST on NCBI transcript from alignment at sc0000038:93824..95514+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003865 ID=TCONS_00003865|Name=TCONS_00003865|organism=Clytia hemisphaerica|type=transcript|length=1691bp|location=Sequence derived from alignment at sc0000038:93824..95514+ (Clytia hemisphaerica)
CTATTGGTCACTCTAGAACATATAGAACAGGTTCTAGGTAATAAAACAGC
TCTGGAAACCCAACTGGAAAACGAGATGCGACACAAAGATCTACTATTAG
TTATTATCATTGGAGTGGTAGCTGGCTTTGCCATCTTTTTATTGATTATC
ATCATCACCATTGCCATCTTAAGAAGGTATAAAGtaaaacttttgaagga
attcatGATAGCTAATTgctggttggaagtgacgtaaaattagccaatac
gtcactttcaatcTATCTGCttttgggtccgtggaagacattgcaatggt
gtacCAATATCCATAATCAGATGGTTGAGGTCACACACTAAATCTTTACA
AATCCACTTTTTTTCCAGTTACAagcttttgatttcttttgataaaaaac
aattgaattcCAACACAGGAACCGTTTAAGAAtccaatttttagaaattt
caaatctcTATAACACGACACTGGATAATTTTTAGGTTCTGCTTTCCATC
GTAGAAGGTCTTTACAGGAACAATCTCGCATTGTCTGATCATGTCCCTTT
TACGTTCACTTcagggtcaatttttttttaaataacccgATCTCATACTC
ACTCAGGAAGAGTGTCAGGAAAAAAGTGGAACCAAATCAAATTTATGTAT
CTATGAAATCTTTTATCGCACTGGGTTTGGAATTGTAACCTATACCTATT
ACCTGTACCTATTACATCGAAATCCTTTATTCAAACACTGTTACTATTCT
AGCTATACTGGCTCTTGTCTCTTGTCACCTTTACGATCATATTTCGATTA
AAactaaacttttttctttattttagatCACGAGCAAAGGAGAACGAGGT
AAATTTCTTCCTAGATAtggtaaaagtaaaaaaatcagcCCGCGAAAGCA
TATTGCGTTCCTTGTAGTGATCTGAAGTTGCAGGTTAACATATCCCtggt
caaaaaatttgaaaaagcaacTCGGAATATCTAATATTGTCCCTCAAGGT
TCTGGGAATCCTATATCAGATCTTTTAAAGAGTTTTCGCTAAGGGTATTA
TCCTTATTCTTGCTGGTTGAAAACTTCTCCAAATGCGTATCTGTTAAATG
TCGAGTCCAATTCACTCAACGCCTCCTGCATCagtagaatgttcttaaat
gaaGTCATGAAGATAGATACAATGGCTTATTTCGCCTAGTTAATTAAGCC
CAAAAAGTCCAAGATACGGCTGACGACAACATATTGTTATTGGGAATTTA
AAGATCTTTTATTTAAGGGATGTAGGATGGTTTGagatacatttttgttt
ttcagtcacaactgaaaatgaaattacaCATATAGAATCAAACCCTTTAA
CTCGAGCAAGGTTTCTAGTTTCTCACTTAACCTACTCCACAACTCAAAAT
TTTCGTACTCGTACTCGTTCCCCATGCATGTTCCAGTTACAGAGACTCCA
TCGTAGCTTAAATTTTAGGCTATAGTTAACCGACGTTGTTATTATTGTTT
TTCAGTCAATTTCACCTACGTCATCAACACATACGAGCACGTCAACATTT
TACGATACAGATATCGTTTACGCGAATCCAGCTAGTATGAACCTCAGTAA
GTCAATGATTTAGCAAAATTATCACGTATATTTGGGGTGGTTTGTCATCT
ATTAGATTCTGGTTATTAGTGAGATAATGATGCCCCCGTCT Coding sequence (CDS) from alignment at sc0000038:93824..95514+ >TCONS_00003865 ID=TCONS_00003865|Name=TCONS_00003865|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000038:93824..95514+ (Clytia hemisphaerica)
CTATTGGTCACTCTAGAACATATAGAACAGGTTCTAGGTAATAAAACAGC
TCTGGAAACCCAACTGGAAAACGAGATGCGACACAAAGATCTACTATTAG
TTATTATCATTGGAGTGGTAGCTGGCTTTGCCATCTTTTTATTGATTATC
ATCATCACCATTGCCATCTTAAGAAGatCACGAGCAAAGGAGAACGAGTC
AATTTCACCTACGTCATCAACACATACGAGCACGTCAACATTTTACGATA
CAGATATCGTTTACGCGAATCCAGCTAGTATGAACCTCAGTAAGTCAATG
ATTTAGCTATTGGTCACTCTAGAACATATAGAACAGGTTCTAGGTAATAA
AACAGCTCTGGAAACCCAACTGGAAAACGAGATGCGACACAAAGATCTAC
TATTAGTTATTATCATTGGAGTGGTAGCTGGCTTTGCCATCTTTTTATTG
ATTATCATCATCACCATTGCCATCTTAAGAAGatCACGAGCAAAGGAGAA
CGAGTCAATTTCACCTACGTCATCAACACATACGAGCACGTCAACATTTT
ACGATACAGATATCGTTTACGCGAATCCAGCTAGTATGAACCTCAGTAAG
TCAATGATTTAGCTATTGGTCACTCTAGAACATATAGAACAGGTTCTAGG
TAATAAAACAGCTCTGGAAACCCAACTGGAAAACGAGATGCGACACAAAG
ATCTACTATTAGTTATTATCATTGGAGTGGTAGCTGGCTTTGCCATCTTT
TTATTGATTATCATCATCACCATTGCCATCTTAAGAAGatCACGAGCAAA
GGAGAACGAGTCAATTTCACCTACGTCATCAACACATACGAGCACGTCAA
CATTTTACGATACAGATATCGTTTACGCGAATCCAGCTAGTATGAACCTC
AGTAAGTCAATGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003865-exon-sc0000038-1491911889:93824..93999 | TCONS_00003865-exon-sc0000038-1491911889:93824..93999 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1510915933:93824..93999 | TCONS_00003865-exon-sc0000038-1510915933:93824..93999 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1575043694:93824..93999 | TCONS_00003865-exon-sc0000038-1575043694:93824..93999 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1491911889:94650..94671 | TCONS_00003865-exon-sc0000038-1491911889:94650..94671 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1510915933:94650..94671 | TCONS_00003865-exon-sc0000038-1510915933:94650..94671 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1575043694:94650..94671 | TCONS_00003865-exon-sc0000038-1575043694:94650..94671 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1491911889:95329..95514 | TCONS_00003865-exon-sc0000038-1491911889:95329..95514 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1510915933:95329..95514 | TCONS_00003865-exon-sc0000038-1510915933:95329..95514 | Clytia hemisphaerica | exon |
| TCONS_00003865-exon-sc0000038-1575043694:95329..95514 | TCONS_00003865-exon-sc0000038-1575043694:95329..95514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:93824..95514 + |
Blast
The following BLAST results are available for this feature:
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