TCONS_00003858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003858
Unique NameTCONS_00003858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003858 ID=TCONS_00003858|Name=TCONS_00003858|organism=Clytia hemisphaerica|type=transcript|length=341bp
AAAAGTTCAGATGGCTTGTAACATCGATGATAAAGTGATCTGAGAGAGCA
GTTGGTGTGCATAGGTAGTTGAAGATTGAATCAGAGTTATTAGTCAGTAA
GAAGTCTAATATATTGCCATTAGAATGAGTAGGTTTATGGATCATCTGGT
TTAAGTTTAAAATTGAagtaaaattgtttaaaaaatctaGAAGTTGTTTG
TTGCAACTAAGTGATGGTATGTAAGAGTCATTTTTTATGGTGTGGGGTAT
ATTGAAATCAGCACATAGATAAATATCGGGGGTATTtccttcgattgatt
cgatgatGTCTTGCATTGCTGAGATAAGGTCCAAGAATTCC
Run BLAST on NCBI

protein sequence of TCONS_00003858-protein

>TCONS_00003858-protein ID=TCONS_00003858-protein|Name=TCONS_00003858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
EFLDLISAMQDIIESIEGNTPDIYLCADFNIPHTIKNDSYIPSLSCNKQL
LDFLNNFTSILNLNQMIHKPTHSNGNILDFLLTNNSDSIFNYLCTPTALS
DHFIIDVTSHLNF
Run BLAST on NCBI

transcript from alignment at sc0000031:902143..902483

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003858 ID=TCONS_00003858|Name=TCONS_00003858|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0000031:902143..902483 (Clytia hemisphaerica)
GGAATTCTTGGACCTTATCTCAGCAATGCAAGACatcatcgaatcaatcg
aaggaAATACCCCCGATATTTATCTATGTGCTGATTTCAATATACCCCAC
ACCATAAAAAATGACTCTTACATACCATCACTTAGTTGCAACAAACAACT
TCtagattttttaaacaattttactTCAATTTTAAACTTAAACCAGATGA
TCCATAAACCTACTCATTCTAATGGCAATATATTAGACTTCTTACTGACT
AATAACTCTGATTCAATCTTCAACTACCTATGCACACCAACTGCTCTCTC
AGATCACTTTATCATCGATGTTACAAGCCATCTGAACTTTT

Coding sequence (CDS) from alignment at sc0000031:902143..902483

>TCONS_00003858 ID=TCONS_00003858|Name=TCONS_00003858|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000031:902143..902483 (Clytia hemisphaerica)
GAATTCTTGGACCTTATCTCAGCAATGCAAGACatcatcgaatcaatcga
aggaAATACCCCCGATATTTATCTATGTGCTGATTTCAATATACCCCACA
CCATAAAAAATGACTCTTACATACCATCACTTAGTTGCAACAAACAACTT
CtagattttttaaacaattttactTCAATTTTAAACTTAAACCAGATGAT
CCATAAACCTACTCATTCTAATGGCAATATATTAGACTTCTTACTGACTA
ATAACTCTGATTCAATCTTCAACTACCTATGCACACCAACTGCTCTCTCA
GATCACTTTATCATCGATGTTACAAGCCATCTGAACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002167XLOC_002167Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003858-proteinTCONS_00003858-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003858-exon-sc0000031-1491911889:902143..902483TCONS_00003858-exon-sc0000031-1491911889:902143..902483Clytia hemisphaericaexon
TCONS_00003858-exon-sc0000031-1510915933:902143..902483TCONS_00003858-exon-sc0000031-1510915933:902143..902483Clytia hemisphaericaexon
TCONS_00003858-exon-sc0000031-1575043694:902143..902483TCONS_00003858-exon-sc0000031-1575043694:902143..902483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:902143..902483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.509682	0	0.601795	0.551617	0	0	4.07819	1.05805	0	0	1.92541	0	0	2.08455	0.189605	0	0	0	0	1.16573	0	0.716283	0.574182	0.0681609	0	0.871569	1.75541	0	0	0.418704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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