TCONS_00003847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003847
Unique NameTCONS_00003847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003847 ID=TCONS_00003847|Name=TCONS_00003847|organism=Clytia hemisphaerica|type=transcript|length=259bp
TAAAAGCCTAGtaattttaagctaaaaattggaaaaatagtctctcaaag
ggtcgattttcttGCAAACCTAGAACCTAGCTCTGAGCTCTATTCTCTAT
TCTGTCAAAgtgtcaaatatttttaaataattatataTGACATCCATAAT
ACATATAAAATTAGTGCAAATTTTTATAAGCTTAATTAAATTGAAttatt
tatttctagttttttttttgggTAGAATAATTTTTTAACGATATTATATT
GGTTGTATG
Run BLAST on NCBI

transcript from alignment at sc0000031:621515..621773

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003847 ID=TCONS_00003847|Name=TCONS_00003847|organism=Clytia hemisphaerica|type=transcript|length=259bp|location=Sequence derived from alignment at sc0000031:621515..621773 (Clytia hemisphaerica)
CATACAACCAATATAATATCGTTAAAAAATTATTCTAcccaaaaaaaaaa
ctagaaataaataaTTCAATTTAATTAAGCTTATAAAAATTTGCACTAAT
TTTATATGTATTATGGATGTCAtatataattatttaaaaatatttgacac
TTTGACAGAATAGAGAATAGAGCTCAGAGCTAGGTTCTAGGTTTGCaaga
aaatcgaccctttgagagactatttttccaatttttagcttaaaattaCT
AGGCTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002156XLOC_002156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003847-exon-sc0000031-1491911889:621515..621773TCONS_00003847-exon-sc0000031-1491911889:621515..621773Clytia hemisphaericaexon
TCONS_00003847-exon-sc0000031-1510915933:621515..621773TCONS_00003847-exon-sc0000031-1510915933:621515..621773Clytia hemisphaericaexon
TCONS_00003847-exon-sc0000031-1575043694:621515..621773TCONS_00003847-exon-sc0000031-1575043694:621515..621773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:621515..621773 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.99919	1.94992	1.50936	0	0.898856	1.42058	3.42773	0	3.37004	1.39145	0	0	0.44329	0.920721	1.13544	0.812332	0	0.512856	0	0	1.28888	2.82902	3.82116	2.0844	0.715626	0	0	0.97539	0.739799	1.50748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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