TCONS_00003824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003824
Unique NameTCONS_00003824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2008

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003824 ID=TCONS_00003824|Name=TCONS_00003824|organism=Clytia hemisphaerica|type=transcript|length=2008bp
GATGGACCAATTGCTATCATAATGACACCAACACGTGAATTGGCTTTACA
GATTTTCCGTGAAGGAAAGAAGTTCTGTAAACCGCTACAACTTTCGATTG
CTTGTATATACGGTGGTAGTGGCATCAGTGAACAGATCGCTGAGTTGAAG
AGAGGAGCAGAAATCATCGTCTGTACACCCGGGCGTATGATTGACATGTT
GGCAGCGAATAACGGCAAAGTGACCAATTGTAGACGTTGCACATATCTGG
TGATGGATGAAGCTGACAGAATGTTTGACATGGGTTTCGAACCACAGGTA
ATGCGCATCGTGGATAGTATACGGAAAGACCGACAAACTGTCCTCTTCTC
CGCCACTTTCCCACGCCAAATGGAAGCCGTCGCTCGTAAAGTTCTTATCA
AACCAGTCGAAATCCAAGTTGGAGGTCGGAGCATCGTCTGTTCGGACGTC
GAACAGCACGCCGTCGTTATAGACGCGGATAACCGTTTCTTTAAGTTGTT
AGAGCTACTTGGTGNATCGTCTGTTCGGACGTCGAACAACACGCCGTCGT
TATAGACGCGGATAACCGTTTCTTTAAGTTGTTAGAGCTACTTGGTGTCT
ATCAAGAGCGTGGCAGTATTTTGGTTTTCGTCGAAAAGCAAGAAACGGCA
GATTCCTTGTTCAAGGATTTGTTAAAGAAAGGCTATCCGTGTCTTTCCCT
ACACGGTGGCATGGATCAGTACGACCGTGACTCTACCATCGCCGACTTCA
AGAACGGTGTTACCAAACTAATGGTATCCACGTCAGTTGCAGCTAGAGGC
TTAGATGTAAAGAACTTGATTTTGGTTATTAATTACGATTGCCCGAATCA
CTACGAGGATTACGTGCATCGGTGCGGTCGTACGGGCCGCGCGGGTAATA
AAGGGACCGCGTTTACGTTTTTGACGTACGAACAAGGCCGTAACGCGGGT
GATATCATGAAAGCGTTTGAAGTGAGTAAAGTGGACGTGCCTGAAGACGT
GAAAACCCTTTGGGAAGTTTTCAAAGCAGAGATGGAAGCACAGGGAAAGA
AAATCAGAGCCAATTCTGGATTCTCTGGAAAAGGTTTCAAATTCAATGCT
GAAGAGGACGCGCAAATCTCGGACGCTAAGAAAATGCAGAAAttcaccct
gggtttacaagaTTCGGATGACGAAGCCGAGGCGGCAGAAAACGCCATCG
AAAAAATCGAAGCCGATCTTGATAAAGCTTTCTCTAATAAACCCAAAATC
GCCCTGGCGCCCGAAGTCGCCGAACAACAGAAAGCGCAGAAGACTGCCAC
CGCTGATTCAAATGTTGATAAAGATAAATTGAAAGCCGCTGCGGACCGGG
CGGCCATGTTGAATAAGAAACTTAACTCCGGACAGGTTATTGATCGGAAC
ACGGCTGCTACCGCATCCATTTTACAAGGTCAAAAGATTACGAAATTACA
GGGCGTTGGATTGGCGAAGCAGATGGCGGATAAGGTGAACGCCAAATTGA
ATTATAAACCTGTTGAGGCTGAACCGGCGGAACCGGTGGAAAGTGAGAAA
AAGAAAGCGGTGCGTTATGAAGAAGAAATAGACATTAACGACTTCCCACA
AACGGCAAGATGGCGTATCACATCTAAAGAAATTATCGAGCAAGTGAGGG
AAGTCTCCGAAGCGGGTGTTACCGTACGTGGAATGTATATCCCGCCCAGC
AAGAAGGGCGAAGACGAAAAACGCCTTCATTTGTATATTGAATCATTGAG
TGAGCGAAGTATTCAAATTGCGAAAGCTGAAATTAAACGCTTACTAAAAG
AGGAACTTATGAAGCACGAGTCTAGTTCGTATAGAGGAAATACTGGTCGA
TATAAAGTTGTCTGATTTTTATTATTTGGTTTTTTAGCAAGCATTTTGGT
TGTTATGTTATTTTTATGTATAATGACTAGTCTAGGTTTTTATAATATCA
TTTTTAAGGTTTCATGAGTaaataacaaatattttacgTTATAACGGTAG
CTCTTAAG
Run BLAST on NCBI

protein sequence of TCONS_00003824-protein

>TCONS_00003824-protein ID=TCONS_00003824-protein|Name=TCONS_00003824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MDQYDRDSTIADFKNGVTKLMVSTSVAARGLDVKNLILVINYDCPNHYED
YVHRCGRTGRAGNKGTAFTFLTYEQGRNAGDIMKAFEVSKVDVPEDVKTL
WEVFKAEMEAQGKKIRANSGFSGKGFKFNAEEDAQISDAKKMQKFTLGLQ
DSDDEAEAAENAIEKIEADLDKAFSNKPKIALAPEVAEQQKAQKTATADS
NVDKDKLKAAADRAAMLNKKLNSGQVIDRNTAATASILQGQKITKLQGVG
LAKQMADKVNAKLNYKPVEAEPAEPVESEKKKAVRYEEEIDINDFPQTAR
WRITSKEIIEQVREVSEAGVTVRGMYIPPSKKGEDEKRLHLYIESLSERS
IQIAKAEIKRLLKEELMKHESSSYRGNTGRYKVV
Run BLAST on NCBI

transcript from alignment at sc0000031:878112..884883-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003824 ID=TCONS_00003824|Name=TCONS_00003824|organism=Clytia hemisphaerica|type=transcript|length=6772bp|location=Sequence derived from alignment at sc0000031:878112..884883- (Clytia hemisphaerica)
GATGGACCAATTGCTATCATAATGACACCAACACGTGAATTGGCTTTACA
GATTTTCCGTGAAGGAAAGAAGTTCTGTAAACCGCTACAACTTTCGATTG
CTTGTATATACGGTGGTAGTGGCATCAGTGAACAGATCGCTGAGTTGAAG
AGAGGAGCAGAAATCATCGTCTGTACACCCGGTAATTATTTATACCCCCT
TCTTCTTCGTCATCACCAAAGATATACGATTTTACGTCCGTTGCAAGGAT
AGTAATGGCTGTAAAATGCACAATCAAAAATAGAGTTTGTAATCGGTAAT
GTAGTTGAGACCAATAGTGAAAAAGTTGTGCAACTTAGGGTAAAAGGAGA
ATTTTTTTTCAGAGATCAAACTACATGATTTGGGCCCGGAACCCACTCGA
ATTTTTTGCCCATTTTTTTGGTCAATTTATGATGACCAAACTCGGTTAAA
CAAAAATTGGTCGTTCGCCAAATTTCATACTTTTAGCCAAATGTGCACAA
TGCCAACTAGACGATGTTATCGTCCGTTACAGTGATAATAAAGGCGGGAA
AAATGGCGGTATGGCGTTATGGCGGTATACGGAAAAAAATCGGCGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCGTCACTTTCAACCAATCAGCTGTGG
AAGACAATGGTGCATATCAAGAGTTAACCAAAAATGTTTTTGTGAAATCA
CCAAAACGGTTTTGGTAATAAGTTTCCCTACTGCTTATATACCTTTTTAT
AAAATTACGTGTTATTTTATGTAATTTGTGAAATTTGTGAAATTGAACCA
GTAGAACGTGGTTGGAAAATTGTTCTTTACGTTATATGAAGAATAAAACC
AGTCAAAACAATCAAAAATGGTACTGCCAAATGCAAGCTGTGAATACTCA
TGTTGCTACCCGTACATTGAACCTATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTCTGACTGTTGTCGCCCTTTGCTGAAAAAACAAGATTTTGTTTG
GGGTATCTTTTGGGCATTTTTTATTTGCAAATTTCTTCCAGTCTGTACAG
AGAGTTTACACACCAGATCTGAAGTCAATCTGAAGAGTGCTCTAGGATTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACAACTTCCA
CCTAAGGCCAGAATATAATTATCTTTAAATATAGAATATGGTGGAAAATA
TTGTAAACAAATTGTCTTCAATTGTCAAACTATCCTGTAAAGATTTTTTG
TATCAGAATAAAACTCTTCTCTAGCTGCTTCAAATTGATACCATCTTCCA
GACAAACAAAAATTAAAAACTTCAAAATGATTTCCTGTGGCTATAATTAT
ACTTCTATACTACTGAACATGTCAAATATAAAAAATATAAAAGTTAAAGA
TTAGTAACTTGAGAATTTCTAACAAAACAAAAATAGGGAGTATTGAAAAG
AAGGTAAAAAGCTGTTTTTATCAGAAGGGAAATGTGTAAAATGATACTAA
ATGTACAGCAAGTGTGGNNNNNNTACTGTAGTTAAAAAGAAGAAAAATGA
AGGTTGGAAGTAAAAAATATTAACAACAAACCTGTTAGTCTTTGTGGTGA
TTNNNGTGAAGCATGGCTCTTAAAATTTAAATACTTGTTGCAAATAAATT
GCAAACTAACATTCTAAATTTGAGCTACAAAATAAACCCATAAAGAAAAG
AATTTCATGCAAGAAATTCCTTCAGCCAGCAGTGTAGAACAGTAAAAGTT
GATACTGCTGTGCGTTTTCGAATGTTTTGAAAATGGCCGAACCGAATCGT
CAATAATACGCAAAGGCAAATCCACGGCTTTTTTCAGTTTTTTTGCTTTT
GCGCCAAATTGGTATCGTCTACACTGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
ACGATAGGATCGTCTAAATGCCAACTAATTTATGCACCATTGGCTCCTAC
TAATGGTAGTAGTTGGCGAGAAGAGTTGCTGCGTAAACTCGCTTTAAAAG
AAAAACCTCTTAACGAATTTTGCTTCGGCTTGGATATTATTTCATTTCAT
AAATAGTGACGCAATCTTAGTCTACACAAAGTAAAACACAGAACAACAGT
TCCATCTGGATAATGGCTTTTTACAAGCAATTCATTTTGAAAAATGGAAA
TGGACGGACTTTAAGAAAACTCGCTAGTGTTGGACGGTTAATATGATACA
TCATCCACTTTGTTTGCAGGGCGTATGATTGACATGTTGGCAGCGAATAA
CGGCAAAGTGACCAATTGTAGACGTTGCACATATCTGGTGATGGATGAAG
CTGACAGAATGTTTGACATGGGTTTCGAACCACAGGTAACAATTGTTGCA
ACCATTCATCTGTACCAAACGTCGAATCTCAAAACAGTATTAGGAATTTT
GCAAACACTAATTGCAGTGATTTTTTCTGTCATATGTCATTTCTTGATAT
TGGTTGATTTTACATTTTACCTTTTTTGGGTGATTTTATGGATACGACTA
GTCCCTTAGGTTTTGAAATTACAAAATGTAAACTTAAACAGATATCCATA
GAATTAGAAAAAATCAAACATAACACATTCTTTTATAACGATATTTCGAC
ATGTTACTTGCCTTTTTCCATAGAATTAGAAATATGTTGAACGGTGAAAG
AGAATGTGGCTATTAGAATAATATGGAATAATAAATAGAAATTTCAAAAT
TGCATGTAATTGCTTGCTATTTTCCTTACTAATGCTACTTCCACTTCTTA
AATTTTTAATGGGATATTATTCTTCACTCTGTTTATTTATGCTTTTCTTC
CATCATGTCAGGTAATGCGCATCGTGGATAGTATACGGAAAGACCGACAA
ACTGTCCTCTTCTCCGCCACTTTCCCACGCCAAATGGAAGCCGTCGCTCG
TAAAGTTCTTATCAAACCAGTCGAAATCCAAGTTGGAGGTCGGAGCATCG
TCTGTTCGGACGTCGAACAGCACGCCGTCGTTATAGACGCGGATAACCGT
TTCTTTAAGTTGTTAGAGCTACTTGGTGNATCGTCTGTTCGGACGTCGAA
CAACACGCCGTCGTTATAGACGCGGATAACCGTTTCTTTAAGTTGTTAGA
GCTACTTGGTGTCTATCAAGAGCGTGGCAGTATTTTGGTTTTCGTCGAAA
AGCAAGAAACGGCAGATTCCTTGTTCAAGGATTTGTTAAAGAAAGGCTAT
CCGTGTCTTTCCCTACACGGTGGCATGGATCAGTACGACCGTGACTCTAC
CATCGCCGACTTCAAGAACGGTGTTACCAAACTAATGGTATCCACGTCAG
TTGCAGCTAGAGGCTTAGATGTAAAGAACTTGATTTTGGTTATTAATTAC
GATTGCCCGAATCACTACGAGGATTACGTGCATCGGTGCGGTCGTACGGG
CCGCGCGGGTAATAAAGGGACCGCGTTTACGTTTTTGACGTACGAACAAG
GCCGTAACGCGGGTGATATCATGAAAGCGTTTGAAGTGAGTAAAGTGGAC
GTGCCTGAAGACGTGAAAACCCTTTGGGAAGTTTTCAAAGCAGAGATGGA
AGCACAGGGAAAGAAAATCAGAGCCAATTCTGGATTCTCTGGAAAAGGTT
TCAAATTCAATGCTGAAGAGGACGCGCAAATCTCGGACGCTAAGAAAATG
CAGAAATTCACCCTGGGTTTACAAGATTCGGATGACGAAGCCGAGGCGGC
AGAAAACGCCATCGAAAAAATCGAAGCCGATCTTGATAAAGCTTTCTCTA
ATAAACCCAAAATCGCCCTGGCGCCCGAAGTCGCCGAACAACAGAAAGCG
CAGAAGACTGCCACCGCTGATTCAAATGTTGATAAAGATAAATTGAAAGC
CGCTGCGGACCGGGCGGCCATGTTGAATAAGAAACTTAACTCCGGACAGG
TTATTGATCGGAACACGGCTGCTACCGCATCCATTTTACAAGGTCAAAAG
ATTACGAAATTACAGGGCGTTGGATTGGCGAAGCAGATGGCGGATAAGGT
GAACGCCAAATTGAATTATAAACCTGTTGAGGCTGAACCGGCGGAACCGG
TGGAAAGTGAGAAAAAGAAAGCGGTGCGTTATGAAGAAGAAATAGACATT
AACGACTTCCCACAAACGGCAAGATGGCGTATCACATCTAAAGAAATTAT
CGAGCAAGTGAGGGAAGTCTCCGAAGCGGGTGTTACCGTACGTGGAATGT
ATATCCCGCCCAGCAAGAAGGGCGAAGACGAAAAACGCCTTCATTTGTAT
ATTGAATCATTGAGTGAGCGAAGTATTCAAATTGCGAAAGCTGAAATTAA
ACGCTTACTAAAAGAGGAACTTATGAAGCACGAGTCTAGTTCGTATAGAG
GAAATACTGGTCGATATAAAGTTGTCTGATTTTTATTATTTGGTTTTTTA
GCAAGCATTTTGGTTGTTATGTTATTTTTATGTATAATGACTAGTCTAGG
TTTTTATAATATCATTTTTAAGGTTTCATGAGTAAATAACAAATATTTTA
CGTTATAACGGTAGCTCTTAAG

Coding sequence (CDS) from alignment at sc0000031:878112..884883-

>TCONS_00003824 ID=TCONS_00003824|Name=TCONS_00003824|organism=Clytia hemisphaerica|type=CDS|length=1155bp|location=Sequence derived from alignment at sc0000031:878112..884883- (Clytia hemisphaerica)
ATGGATCAGTACGACCGTGACTCTACCATCGCCGACTTCAAGAACGGTGT
TACCAAACTAATGGTATCCACGTCAGTTGCAGCTAGAGGCTTAGATGTAA
AGAACTTGATTTTGGTTATTAATTACGATTGCCCGAATCACTACGAGGAT
TACGTGCATCGGTGCGGTCGTACGGGCCGCGCGGGTAATAAAGGGACCGC
GTTTACGTTTTTGACGTACGAACAAGGCCGTAACGCGGGTGATATCATGA
AAGCGTTTGAAGTGAGTAAAGTGGACGTGCCTGAAGACGTGAAAACCCTT
TGGGAAGTTTTCAAAGCAGAGATGGAAGCACAGGGAAAGAAAATCAGAGC
CAATTCTGGATTCTCTGGAAAAGGTTTCAAATTCAATGCTGAAGAGGACG
CGCAAATCTCGGACGCTAAGAAAATGCAGAAATTCACCCTGGGTTTACAA
GATTCGGATGACGAAGCCGAGGCGGCAGAAAACGCCATCGAAAAAATCGA
AGCCGATCTTGATAAAGCTTTCTCTAATAAACCCAAAATCGCCCTGGCGC
CCGAAGTCGCCGAACAACAGAAAGCGCAGAAGACTGCCACCGCTGATTCA
AATGTTGATAAAGATAAATTGAAAGCCGCTGCGGACCGGGCGGCCATGTT
GAATAAGAAACTTAACTCCGGACAGGTTATTGATCGGAACACGGCTGCTA
CCGCATCCATTTTACAAGGTCAAAAGATTACGAAATTACAGGGCGTTGGA
TTGGCGAAGCAGATGGCGGATAAGGTGAACGCCAAATTGAATTATAAACC
TGTTGAGGCTGAACCGGCGGAACCGGTGGAAAGTGAGAAAAAGAAAGCGG
TGCGTTATGAAGAAGAAATAGACATTAACGACTTCCCACAAACGGCAAGA
TGGCGTATCACATCTAAAGAAATTATCGAGCAAGTGAGGGAAGTCTCCGA
AGCGGGTGTTACCGTACGTGGAATGTATATCCCGCCCAGCAAGAAGGGCG
AAGACGAAAAACGCCTTCATTTGTATATTGAATCATTGAGTGAGCGAAGT
ATTCAAATTGCGAAAGCTGAAATTAAACGCTTACTAAAAGAGGAACTTAT
GAAGCACGAGTCTAGTTCGTATAGAGGAAATACTGGTCGATATAAAGTTG
TCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002133XLOC_002133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003824-exon-sc0000031-1575043694:884703..884883TCONS_00003824-exon-sc0000031-1575043694:884703..884883Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1575043694:880299..880414TCONS_00003824-exon-sc0000031-1575043694:880299..880414Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1575043694:878112..879822TCONS_00003824-exon-sc0000031-1575043694:878112..879822Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1510915933:884703..884883TCONS_00003824-exon-sc0000031-1510915933:884703..884883Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1510915933:880299..880414TCONS_00003824-exon-sc0000031-1510915933:880299..880414Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1510915933:878112..879822TCONS_00003824-exon-sc0000031-1510915933:878112..879822Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1491911889:884703..884883TCONS_00003824-exon-sc0000031-1491911889:884703..884883Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1491911889:880299..880414TCONS_00003824-exon-sc0000031-1491911889:880299..880414Clytia hemisphaericaexon
TCONS_00003824-exon-sc0000031-1491911889:878112..879822TCONS_00003824-exon-sc0000031-1491911889:878112..879822Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003824-proteinTCONS_00003824-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:878112..884883 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.2105	13.5386	27.3529	33.8603	40.477	32.1326	28.8785	32.6612	15.8207	25.9571	21.818	11.6104	12.7747	10.2701	12.2843	17.9539	20.5484	16.3424	6.72934	9.52064	11.8598	11.9974	22.1819	19.7143	21.3004	21.599	16.0084	13.102	25.15	24.7987
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR004088KH_dom_type_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00003824 vs. Swiss-Prot (Human)
Match: DDX46 (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 404.831 bits (1039), Expect = 4.197e-127
Identity = 231/453 (50.99%), Postives = 317/453 (69.98%), Query Frame = 3 
Query:  516 IVCSDVEQHAVVIDADNRFFKLLELLGVYQERGSILVFVEKQETADSLFKDLLKKGYPCLSLHGGMDQYDRDSTIADFKNGVTKLMVSTSVAARGLDVKNLILVINYDCPNHYEDYVHRCGRTGRAGNKGTAFTFLTYEQGRNAGDIMKAFEVSKVDVPEDVKTLWEVFKAEMEAQGKKIRANSGFSGKGFKFNAEEDAQISDAKKMQKFTLGLQDSDDXXXXXXXXXXXXXXDLDKAFSNKPKIALAPEVAEXXXXXXXXXXDSNVXXXXXXXXXXXXXXXXXXLNSGQVIDRNTAATASILQGQKI--TKLQGVGLAKQMADKVNAKLNYXXXXXXXXXXXXXXXXXX-XRYEEEIDINDFPQTARWRITSKEIIEQVREVSEAGVTVRGMYIPPSKKG-EDEKRLHLYIESLSERSIQIAKAEIKRLLKEELMKHESSSYRGNTGRYKVV 1862
            +VCSDVEQ  +VI+ + +F KLLELLG YQE GS+++FV+KQE AD L KDL++  YPC+SLHGG+DQYDRDS I DFKNG  KL+V+TSVAARGLDVK+LILV+NY CPNHYEDYVHR GRTGRAGNKG A+TF+T +Q R AGDI+KA E+S   VP D++ LW  FK + +A+GK I+ +SGFSGKGFKF+  E A  ++ KK+QK  LGLQDSDD     E+A   I+  ++  F++K ++    ++A    +   A    N +K ++           K L   +  D    AT +IL+G  I    +    +A+Q+A+K+NAKLNY P+E +  E  +  + ++  RYEEE++INDFPQTARW++TSKE ++++ E SEA +T+RG Y PP K+  E E++++L IES +E ++Q AKAEI RL+KEEL++ ++S    N GRYKV+
Sbjct:  588 VVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDD-----EDAAVDIDEQIESMFNSKKRVK---DMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLGI-ESQDVMQQATNAILRGGTILAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQPTNKGRYKVL 1031

HSP 2 Score: 268.47 bits (685), Expect = 3.572e-77
Identity = 123/157 (78.34%), Postives = 143/157 (91.08%), Query Frame = 1 
Query:    1 DGPIAIIMTPTRELALQIFREGKKFCKPLQLSIACIYGGSGISEQIAELKRGAEIIVCTPGRMIDMLAANNGKVTNCRRCTYLVMDEADRMFDMGFEPQVMRIVDSIRKDRQTVLFSATFPRQMEAVARKVLIKPVEIQVGGRSIVCSDVEQHAVVI 471
            +GPIA+IMTPTRELALQI +E KKF K L L + C+YGG+GISEQIAELKRGAEIIVCTPGRMIDMLAAN+G+VTN RR TY+V+DEADRMFDMGFEPQVMRIVD++R DRQTV+FSATFPR MEA+AR++L KP+E+QVGGRS+VCSDVEQ  +VI
Sbjct:  444 EGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI 600
The following BLAST results are available for this feature:
BLAST of TCONS_00003824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX464.197e-12750.99Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]
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