TCONS_00003824-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003824-protein
Unique NameTCONS_00003824-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003824-protein ID=TCONS_00003824-protein|Name=TCONS_00003824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MDQYDRDSTIADFKNGVTKLMVSTSVAARGLDVKNLILVINYDCPNHYED
YVHRCGRTGRAGNKGTAFTFLTYEQGRNAGDIMKAFEVSKVDVPEDVKTL
WEVFKAEMEAQGKKIRANSGFSGKGFKFNAEEDAQISDAKKMQKFTLGLQ
DSDDEAEAAENAIEKIEADLDKAFSNKPKIALAPEVAEQQKAQKTATADS
NVDKDKLKAAADRAAMLNKKLNSGQVIDRNTAATASILQGQKITKLQGVG
LAKQMADKVNAKLNYKPVEAEPAEPVESEKKKAVRYEEEIDINDFPQTAR
WRITSKEIIEQVREVSEAGVTVRGMYIPPSKKGEDEKRLHLYIESLSERS
IQIAKAEIKRLLKEELMKHESSSYRGNTGRYKVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002133XLOC_002133Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003824TCONS_00003824Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR004088KH_dom_type_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 149..176
NoneNo IPR availableGENE3D3.40.50.300coord: 1..206
e-value: 5.9E-25
score: 87.4
NoneNo IPR availableCDDcd00079HELICccoord: 1..70
e-value: 6.02296E-22
score: 88.834
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 1..62
e-value: 1.4E-11
score: 54.5
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 1..62
e-value: 1.1E-17
score: 64.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..101
score: 16.325
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 300..377
e-value: 8.7E-4
score: 18.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..98

Blast
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BLAST of TCONS_00003824-protein vs. Swiss-Prot (Human)
Match: DDX46 (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 360.918 bits (925), Expect = 6.507e-116
Identity = 194/391 (49.62%), Postives = 270/391 (69.05%), Query Frame = 0 
Query:    1 MDQYDRDSTIADFKNGVTKLMVSTSVAARGLDVKNLILVINYDCPNHYEDYVHRCGRTGRAGNKGTAFTFLTYEQGRNAGDIMKAFEVSKVDVPEDVKTLWEVFKAEMEAQGKKIRANSGFSGKGFKFNAEEDAQISDAKKMQKFTLGLQDSDDEAEAAENAIEKIEADLDKAFSNKPKI--ALAPEVAEQQKAQKTATADSNVDKDKLKAAADRAAMLNKKLNSG-QVIDRNTAATASILQGQKI--TKLQGVGLAKQMADKVNAKLNYKPVEAEPAEPVESEKKKAV-RYEEEIDINDFPQTARWRITSKEIIEQVREVSEAGVTVRGMYIPPSKKG-EDEKRLHLYIESLSERSIQIAKAEIKRLLKEELMKHESSSYRGNTGRYKVV 384
            +DQYDRDS I DFKNG  KL+V+TSVAARGLDVK+LILV+NY CPNHYEDYVHR GRTGRAGNKG A+TF+T +Q R AGDI+KA E+S   VP D++ LW  FK + +A+GK I+ +SGFSGKGFKF+  E A  ++ KK+QK  LGLQDSDDE  A +     I+  ++  F++K ++    AP  +       +  A +  + +KL+ A   A  +N + N G +  D    AT +IL+G  I    +    +A+Q+A+K+NAKLNY P+E +  E  +  + ++  RYEEE++INDFPQTARW++TSKE ++++ E SEA +T+RG Y PP K+  E E++++L IES +E ++Q AKAEI RL+KEEL++ ++S    N GRYKV+
Sbjct:  653 IDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAVD-----IDEQIESMFNSKKRVKDMAAPGTS-------SVPAPTAGNAEKLEIAKRLALRINAQKNLGIESQDVMQQATNAILRGGTILAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQPTNKGRYKVL 1031
The following BLAST results are available for this feature:
BLAST of TCONS_00003824-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX466.507e-11649.62Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]
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