TCONS_00003812 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003812
Unique Name	TCONS_00003812
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	532

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000031:642877..648467-

transcript sequence

>TCONS_00003812 ID=TCONS_00003812|Name=TCONS_00003812|organism=Clytia hemisphaerica|type=transcript|length=532bp
TACGAAGGCATTGACCCTGCTTACCTAGCACAAGCAGAACTAATGGCGTC
CAACGAAGCTGCTATTCAACagaaccaacaacaacaacaaagttCTGCCT
CATCTCAACAAAATGCTCAACAGATTTCTGCTGCTGACCTAGCAAATGCT
CTATCCTTTGCTACAATGACACAAGatcCTGCTACACCGAGTAGTTTACC
CTTTGGAAGTCCTGGTTCGCAACCCAATCGACAACCACAACCGGATttca
CAGCTGGTATAGAACAAATGAGAACCGAGTTTAATATCTCTGAAGACGTG
GCAAGAAGAGCTCTGGTAATGACCAACGGGAATGTGCAAATGGCTGTTAA
CCTTGTTTTTGACGGATCTGTCAATTAATCAATGTTTTCAAATTCGATcc
tattttttaaacaaaagttaAGTTTTGAATTAATACAATGTAGATTAACT
AACAGCCATTGATAGGATGCTTGGATGGCTTGGTCATTCtggtcattttg
gacagttctAAAACGTTGCTTGTTCTATCTTT

Run BLAST on NCBI

transcript from alignment at sc0000031:642877..648467-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003812 ID=TCONS_00003812|Name=TCONS_00003812|organism=Clytia hemisphaerica|type=transcript|length=5591bp|location=Sequence derived from alignment at sc0000031:642877..648467- (Clytia hemisphaerica)
TACGAAGGCATTGACCCTGCTGTAAGTTGTTATTACCCCGCAGTGGCGGA
GAGCCTTTATTTCTTTTTTAAGAAGTATGGCTTCAAGAAACACTCTCCGT
CATTAACTTTGAACCCCTTCAGATCCATCAGAAGAGAACTTCACTCAACC
TGAAAAATTAGAGCGCTCTAGTTCACGTATGATAGATTACTGATGTTCGT
CCGTTCGTTAGTTCGTTAGTTCGTTAGTTCGTTAGTTTTCTCGAGATTGG
CTCATTAGTTTTTCCTGATTTTTGGCAAAAAGATGCAAAATAATAATAAT
AATAATAATATTTTTCCTCAGAGTTAAAAAGTAATAATAAATATATTTAT
AAATATGTTTTAAACTCTATTGAGGTTGGCGCCCGGGGAGCGCCAGGATT
TTCTTTCCACCATCATTGTTAGTGCATCTGACTCACTCAGTCCATACAAC
TTTGCATCTCTGATGACTTCACGGTATGTCGAATTCGTTACACCTGGTTT
CTTTTTTAGACCAGGGTGGTACTGTTCAAAAGTTAACTTTTTTATGTAGC
ATTCGTTTGAAGCTCGGGTGCAGTGTGCAATCAAGTTGTATTGCTGATGT
TGAAGGTACTTAGAAAGCGAAGGCCGGTCGATAAGGTTTTTGATTTGCTC
ATTTGAGTAAAGTAGTTTTTTGAATGCTCCTTTTTTTCCATCATTTGTTG
TATATTCAATCAGTTCAGGTTTGCGTTGATTACCTCCTCTGACTAGGTAA
CGTAAGAATTTGATATATTGACTCTCATTATGATCGAATTGTTTCTTGGT
CAATGTCCAGCACTGACATCCATACATGAGACGGGAGCGAACAAGTGATT
CGAGGTATAGAACTCTGGTGTGAAGTTTGATTTTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGCTTTCGGGTCCGCCTTGTCTGACTCCCGAGGT
AGTTTCAAAGATTATAGAACAACCTTTCATTGAACAGTTAGTTTTATCAT
ACATATCTTCAATGATCTTGAACATTGTTAGGTTTCCAAAGTATCCTTGG
ACAATGGTGAATAGCCAATCTCTACGGATGTGGTAATGTGTAATCATCGA
CAGAGTTGCCGTCGACCGGTGAACCATTTTGGCGATTTTCAATACTTCAA
TACAATAATTTTCAGCTATGTTAACATGAAGTAGAGGGTTCTCATTTTTT
TTGGCTGGGTAAAGCTTTTACCGATAGGACAACATTGAATTTCCACCTTC
TGTATATAGCTAAGATTTTGTAATATGTTCTAAGTGTTAAGTGTGTTAAG
CGAGAGGGAACTGAAAGTAGTTATGCGTCACCAAAGCACTTAATCTTATA
GTTCTAGGTCTCCTGACAACCACGTTTATTTGTTATCACTTTTTCAGTAC
CTAGCACAAGCAGAACTAATGGCGTCCAACGAAGCTGCTATTCAACAGAA
CCAACAACAACAACAAAGTTCTGCCTCATCTCAACAAAATGCTCAACAGA
TTTCTGCTGCTGACCTAGCAAATGCTCTATCCTTTGCTACAATGACACAA
GGTAATGGATGGAAACAGTTTTTTCTAAATTTCCGATCAAAGATGGTGGA
TATAGCTTGGTAGAACTTGGTAGAACTTCACAGTCGAAATGGACCATGGG
TAATCAGGACTGATTGCGCCCCGATAACGGTTTCCCGTTGGTTAGACGCA
AAAAAATTCAAAAATGTGGAGCAATAGTAAGTCGTCATTAGCGAGCAGTG
GTCCTGATTACCCATTACGCTTTGCAACTGTGAAATGGCCTATGTAAAGA
TCGGTCAGTGATACTAACCATGTGATCTTTTTAAACACTTTTTCTTTCAT
CTGTTGCTATTATTGTTGAAACAATCCAGGCTGGGAACTTTTTCACAGTC
TAGATTTTGATGTTTTCATGGATTATTTCTGATTTTCCGTCCGGTGGTCC
TGAATCGACTTTGTGTATATTGAATTGGGAATTAAGGGCATGATGCGGTG
GTTTGTAAATGGATTGTGCGTACACTCAACAAAAAGCTAACCCTTGGTTT
GCAGTTAATAATGAGACCACGTGTTAAATTTCGAGAAATCTGTACACAGG
GTATGTTTTTTCTTTGAGGTTTTCAAGCTTCCACATTTTTGGGCATGCTG
CTATGTAAAAATCGCTTGATGGAAATATTCTCAATTTTTCGTTTTTCTAT
TTTAGATCCTGCTACACCGAGTAGTTTACCCTTTGGAAGTCCTGGTTCGC
AACCCAATCGACAACCACAACCGGATGTAAGAATTGGATTTTCATTTTTT
GCTTCATTAAGAACCATACAGGGGGGGGGGACATTTTCAAGTCAAAAAAA
GAATTATTGAAAATGTGTGGATGCACTCTGGAAAATTTATTTATTTATTT
ATTTATAGTAATATATTTCGCAGGTCTATCGACCTCTATGAAATAATCAT
ATTTAACATTTTGTAGGCGCACAGTTGGCCTCTAATCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTATTTTGT
TGAATTTCGATTTTTTTTGGTATTTCTTTAGTTTTCGCCATTTTGATGCA
TTTCGACGAGCACAACCAGCCAGAAAAAAATTTGACGTCAAATGATTTAT
AATGAATTAATTAAAATAATTAATAATTATAAATGGCAATACCTTAAAGG
GAGGGTGGACGAAGCAAAATCAGTCTTTTACCCTCTGGAAATTTTAGAAT
AACTTTTTACCCTCTTGAAAAAATGATAAAACACTCCCTGGAAATTGTTC
TCGGATTACCCCCTAGAAATGTTTGTCCAATCCCCTTTATATGGATATAA
AATGGAATGGCCCAATGTATATGATTTCTATTCTGTCCGATTGGACTGCC
ACATCTATGCTATTAAATTATGCAAGGGTCTCGGTGCTACACAGTCCCTT
TACTGTTCTCCAGTCGAATAAGAGCAATGTTCATCTTTATCTGGCTCCCA
GATGCAGAAATTTTCATCCGGCACGCTAAAACTCGGGACAATTTTCAATA
TCTGGAAGGTTTAGATTACGGAATTTGGCAAGACCGCGTCAAGGATTTTG
CAGTAGGAGGCCTGGTAACCCAGCCCTCGTTCTCGGGGATTGGCGGGTCC
AACTGAAATATTTTTAGCTTTGCGAACGAGGGAACCCGACTGGGGATGTG
ACACATCAAAGGCTGACCATCATTTCTTTCCGAAGGGAAATTGACCCGCT
CCTTTAGAGCTTTAGCGTGCGCGGCCGCCAATCTGTTATTGGAATATTAG
ATAACCTTCTTCGCAAATTACCGTTTTGCTCGACCCACTCTCCAAAGTAA
AGGCTGGTTTCCACTTACGCGTGCTGCGATTGCACCGTTTGGCTTCAATC
CTTTTTGCTTGGAAAAAAGATTACGTCATAATAATGTAGCGCGCGCTCTT
TTCAAACATTACGTCAGATCGCGCCAATGGAATTGCTTCATTTTTCTTTT
GACCAATAGCGTGGAAGCTTTACCAGATAAAGTGCGGTCGCAGCGCGCGC
AAGTGGAGACCGGCCTTAAAAGAACTTAAAATGCATTACCTTTTGTTTTT
TTTAGTTCACAGCTGGTATAGAACAAATGAGAACCGAGTTTAATATCTCT
GAAGACGTGGCAAGAAGAGCTCTGGTAATGACCAACGGGAATGTGCAAAT
GGCTGTTAACCTTGTTTTTGACGGATCTGTCAATTAATCAATGTTTTCAA
ATTCGATCCTATTTTTTAAACAAAAGTTAAGTTTTGAATTAATACAATGT
AGATTAACTAACAGCCATTGATAGGATGCTTGGATGGCTTGGTCATTCTG
GTCATTTTGGACAGTTCTAAAACGTTGCTTGTTCTATCTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002125	XLOC_002125	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003812-exon-sc0000031-1575043694:648447..648467	TCONS_00003812-exon-sc0000031-1575043694:648447..648467	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1575043694:646267..646420	TCONS_00003812-exon-sc0000031-1575043694:646267..646420	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1575043694:645542..645612	TCONS_00003812-exon-sc0000031-1575043694:645542..645612	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1575043694:642877..643162	TCONS_00003812-exon-sc0000031-1575043694:642877..643162	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1510915933:648447..648467	TCONS_00003812-exon-sc0000031-1510915933:648447..648467	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1510915933:646267..646420	TCONS_00003812-exon-sc0000031-1510915933:646267..646420	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1510915933:645542..645612	TCONS_00003812-exon-sc0000031-1510915933:645542..645612	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1510915933:642877..643162	TCONS_00003812-exon-sc0000031-1510915933:642877..643162	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1491911889:648447..648467	TCONS_00003812-exon-sc0000031-1491911889:648447..648467	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1491911889:646267..646420	TCONS_00003812-exon-sc0000031-1491911889:646267..646420	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1491911889:645542..645612	TCONS_00003812-exon-sc0000031-1491911889:645542..645612	Clytia hemisphaerica	exon
TCONS_00003812-exon-sc0000031-1491911889:642877..643162	TCONS_00003812-exon-sc0000031-1491911889:642877..643162	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000031	supercontig	sc0000031:642877..648467 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.968505	0.974921	0	0	0	0	0	0	0	3.15828e-09	9.3936e-08	0	8.91391	0	0	6.18413	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00003812 vs. Swiss-Prot (Human)

BLAST of TCONS_00003812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00003812 (transcript) - C. hemisphaerica