TCONS_00003809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003809
Unique NameTCONS_00003809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003809 ID=TCONS_00003809|Name=TCONS_00003809|organism=Clytia hemisphaerica|type=transcript|length=916bp
ATATCGATATGGGAAGACAGTCAAGAACAGAAATCAATTTACAACGTTTA
TTGAGACATTGTGAAACCATGGCAACTGAGTCTCAACACAAAGAAACTAA
AGTCAATTGGAGGCTGGCAAAGTATCTGGAGACGGCTGATGACCAAATAT
GCAAAATGGAAACTGATAAAAATTTGAAGGTTCCAGAAGAAGTGATTACA
GAATACAAGCGAAAAGTGACTTTCCTCAAAGATGTTGTACAAGCTGAAAA
AACGCAAGATCCTTTGGAGAGGATCTTGATTTGCCAACACCTCCTTCCAA
CATCAGTTATTTCATCCACTTCATCAATAAACCTGGACGAAGAACAacag
agaaaaacaaacaataaaacCAAAGAACTCCATCTCCAAATTAAAGGGAA
ACATCAAAACGATTTACGGCGTCAATTATTAGGTGAAAAAGGTTCACATC
CACACAGTTTAAGTAAAAGAGAAACAGAAAACAACACGGAGAATAACATT
GATGAGATCATCAAACAACATCATGACATCCAAGAAAAAGTCGCCGAAGA
AATGATCCTGATGACGCAACATATGAAACAAACCACGCTTCGATCACGTG
ATATTATCAATAAGGATAAACAGGAACTAGAACGTTCAAACAAAGTGGTT
GATCATAATTTCCAGAAATTGAAAGTGGAATCCGATCGACTGGAGGAAAT
GAACAAACGAAGATGTTCTTGTTCCATATGGCTCATGCTTGGTGTCGTTT
GTATTGTTTTCATTAAtatgatcattttcatcaagttCTTCCCTAAAAAG
AGAGGTTATTAAAAATGGGCacttattttttctcatttttgtagGCCCTC
cataataaaaattttccattttttgggGAAGGTTCAGACTGTCTGTTTAG
TTTTCATCAATTTCCC
Run BLAST on NCBI

protein sequence of TCONS_00003809-protein

>TCONS_00003809-protein ID=TCONS_00003809-protein|Name=TCONS_00003809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
IDMGRQSRTEINLQRLLRHCETMATESQHKETKVNWRLAKYLETADDQIC
KMETDKNLKVPEEVITEYKRKVTFLKDVVQAEKTQDPLERILICQHLLPT
SVISSTSSINLDEEQQRKTNNKTKELHLQIKGKHQNDLRRQLLGEKGSHP
HSLSKRETENNTENNIDEIIKQHHDIQEKVAEEMILMTQHMKQTTLRSRD
IINKDKQELERSNKVVDHNFQKLKVESDRLEEMNKRRCSCSIWLMLGVVC
IVFINMIIFIKFFPKKRGY
Run BLAST on NCBI

transcript from alignment at sc0000031:622135..627176-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003809 ID=TCONS_00003809|Name=TCONS_00003809|organism=Clytia hemisphaerica|type=transcript|length=5042bp|location=Sequence derived from alignment at sc0000031:622135..627176- (Clytia hemisphaerica)
ATATCGATATGGGAAGACAGTCAAGAACAGAAATCAATTTACAACGTTTA
TTGAGACATTGTGAAACCATGGCAACTGAGTCTCAACACAAAGAAACTAA
AGTCAATTGGAGGCTGGCAAAGGTATGTAATGAAGTCTTTTTTATCTGTC
TTTTCAATACTTCGTTTTTTTAGGCTCAGCATTGTTCTTTCTAATTTTAA
TTGTTCTTGTTTTTTTAAGATTTCAAGGTCTTACTAATTATTCTTTTACA
ATTCTGGTTCTTCTTAGTGCCAAAAATGCTCGATAATATCTCAGAGCTGT
TTAAGTTATTAAGAATAAGTGAAATTACAGAATTATAGAGTTCGTTTTCT
CATCCTCTTTTTCAGTATCTGGAGACGGCTGATGACCAAATATGCAAAAT
GGAAACTGATAAAAATTTGTAAACTTTTAATATCTCTTTTATTAACCTCA
TATACTGTCTTCATTTTATGTTAAAAACCTTCTTCCTGTTTTAAGGTCTT
GATTTCGGCCAAACACCCTGAGATTAAACGGCTGTATCCAACATCTAATT
GGTTTCGAAACCAATGAAAAGTGTAATTCTTCTGGAACTTTGCTGATGTC
CAGCCTCCTAAGCTAGAAGAAACTTTGGCTTGAAAATGTTTTCGCCAAAA
TAAAATCCGCCAAATTGCACAAGGGTCCCATTCACCAAAATTTCCCTCAG
GTAATATTAAAAAATTCATATTTTGCATTGCTGTAGGAAGGTTCCAGAAG
AAGTGATTACAGAATACAAGCGAAAAGTGACTTTCCTCAAAGATGTTGTA
CAAGCTGAAAAAACGGTATCGTATATTAATATACCTTTATATATCCCTGG
GCCAAGCTATGTCCGCCATCTTTGATCGAAGTTTTTTTGAAAGTTGGTAC
CTGCAAAGAAGCCATTGTAGTGTTTGAAACTTTGCCTAAACGACAAACGG
CGCTACATCATTAGTGTACAAGCAAAACTAGATCTAGCGCTCTCTCCGCG
GGTACCAATTTCAAAAAAACTCCGATCATAATATTTTGCTTGGCTGGCAT
TGAGGAACTTGGAACACAGGGATATACAATGTATAGCAATGTGCCCTCCC
GGTTATTACCATAATGGCTTTATGGCAACTCCTGAACTTGGGCACAGGAT
GTACGGTTACACAGGGATATATAAAAGTCAGTGCAAGCATCGAAGAAATA
GTTTTGCTTTTATTTTCGCAGTACCATAGAATGGGTGAACTTTTTCATGC
ACGGGGAAACACTCAACAAGGGGAAAAGATTAACAAAAATCCCAAAATGA
CGTAATTAATTGCCTTCTTTGCAAGGATACTCCGCATAGAAAACTGTAGA
TGGCTAAAATGTTAAGAGCAAGCTAAGAATATTTTAAGGCTTTGTGGACT
CAAAAACACACAATTTTTTTAAGAAATAGCACAAAAATAGTCCCAGAAAA
TGGGACTTTTAAAAATTGTGGATGTTATTATTAAAAAACACAGTAAAAAG
TTAAAGGAGAATCAAAAGGCTTTTTCCTCCAGGTTTTTTAACCAATGAAT
AATTTTTATGTTTTACAGCAAGATCCTTTGGAGAGGATCTTGATTTGCCA
ACACCTCCTTCCAACATCAGTTATTTCATCCACTTCATCAATAAACCTGG
ACGAAGAACAACAGAGAAAAACAAACAATAAAACCAAAGAACTCCATCTC
CAAATTAAAGGGAAACATCAAAACGATTTACGGCGTCAATTATTAGGTAT
ACACCATTGCAATGTCTTCTGACATTACATCATGGATCCAACAGCTGATT
GGTTGTAAGTGACTTAAAATATGTCACTTTCAACCAATGAACTATTGGGT
CCGTGGAAGATATTGCAATGGTGCATATTATGAATACATGCTTTTTTATT
TATAAGAATAATTTTTTACGAACACCAGCCTCAGAATTTAGGCCCTCACA
ATAATAGCTCCATTGTTTGGAACAATAGAAATTTAGAGCAATCTCAGGCT
CGGCCAAAAATTACTGGCCCTTATGAAAAACAAATGTGTAATTTGGAGCT
TACTCCTATGTATGTTTTATTACAGTCAACTCTTTCGATCTTCAAGGGAG
CAATATTCTTTTTCGAATTATAGTAAGATTTGCATAGTAGATGTTCGAAT
TAGAGAGAGTTGACTTTAGTTTTTCATTCCAAATTTAAGAACAAGAAAGT
TTTTTTTTGCGAGAATTCTTTCCTGAATGTCAGGTGGAAAGGAAGGGGTT
ATGCCTCAAGCTACTTTTTTATTAAGTAGATAAAGTATACAAGTCGTTTG
GATTCGAGGGGTCTAAGGAAATAAAGATTTGTGAAATTGATAATCGCAGT
GTGTGGTGAAACTCTAGTTCTCAAGCCATTCATTTTGTTTTTGTTCAGGT
GAAAAAGGTTCACATCCACACAGTTTAAGTAAAAGGTAAAAATATCTTCG
CTTTTCAAAATTTTTTAAACCATTGCTAAGTTCCAACTTGTTTTGTAGTC
GTTCTTATGTATTGTTTTTTTATGAGCTGCATATCTCCATTCTTTAAGTT
GGTAAGAGTTCAGCATCTAATACTACTAGTTCATATTAATTCAACAATGG
GGTTGCAAATCAACAAAATTCTCATCATCTCATCAATTCATTTGATTCTG
ATGTTCACATTCTTTAAATACCAAAGATTTAAAAACCCATACTGCATGAA
AGGCTTTAAAATTTTTTTGTCGAGTTTTAGACCTGACTATTCTGCCATCT
TGTTTTCAATTCTGGTCGTCAACAGCGCGATTCGAATGTTTTGAAATTGG
AACGTTCGAAAACTTATAAAAATAGAAAACAACATGGCGGACTAGCCGAT
TTCAAAATTGATCAGCATATCTAGTGTGTACCTTAACTTGGTCTAATGTC
GACATTCCTCTTCTAATCTTTAGAGATAAGAATAGTAGAAAGGTCAGAAT
CGCTGATGGAAACTATATTTCTTTGCTTAGCGAACAAAGGGGAAAAAATC
TTTTTTCTATCAGTGATTCTGACCTTACTATTATTCCTATCTCTAAAACT
GGGTGTCAGAATTAGACGAGGAATGTCGACATTAGACCAATTTACGGTAA
AGAATATGATATGTGTGATCATTTCAGAGAAACAGAAAACAACACGGAGA
ATAACATTGATGAGATCATCAAACAACATCATGACATCCAAGAAAAAGTC
GCCGAAGAAATGATCCTGATGACGCAACATATGAAACAAACCACGCTTCG
ATCACGTGATATTATCAATAAGGATAAACAGGTTTGCTTTTGACGGGGGT
CTTATTTAGGCCACACGAACGGCGAATTTCGCCGGTCCAAGGTACGAAAG
AAATTACAATTTGCCGGGTTAAAATTCGGTTCGCCGCCTTAAGTACATAT
TCAGGTTAATCTATCGGACAGAGGATCGAGACAAAAATACCATTAGATGC
TAGAAATTTCCAACATGTTTCGGCCAGGGCCGTTTTCAAGGTATATTTCT
AGCTAAAAAAATTCAGTTTTTTTTTTAACAAAAAAAAAAAAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGCTATCAAATTGAGTTCTTGGTTTAAA
CCCTTGGGTTTTAAGGTTTTTAGTTTGTTGATCCAAAAGTTCTCTCGTGA
TAGAATGGTGTTTTTCAGCTGGCTTTCATGTTTCATGTTATTCAGGTTAA
TCAATACTTGCTTGTTAAGAATTCGCCGGAGTGAATTTTTCATTCGCCAG
CCTATCAAAAACAAAGCAGAACTATGCTTTTAACGGAGACGGGACTAGGA
AGGCGCCATTGGATGACTTATCCATCCAGTTTTAGTTTCTGGAGTCAGAA
CTCACTCATGGCCGCTTGACAGAATATGTGGTCTAATGATGTGACAATTC
CCACCCGATGATATTGTTTTAAGATATAGACTCGCTTAAGAGAACTAATT
CTGCTCCTTAAAGTAACAGCTATTTTATTCTAACATATTGATTTAGCTTA
TTGGTAAAGAATTTGTAGGCAAAATACAATTGGCAGGTTTACCGCCGAAT
TCGTCAAAATTGTCTAATCCTCGCTCTAATTGAAAAATTGTGTCACTCGT
ATACGACTCTTGTCCCTACGTCAAAATTACGCCCATTAAGGTGTTGCCCC
ATAATTCTCTTAATGTTATAATCATAATTCGAGATCTTTATCGGATAAAG
TGTACGATATTTTTTTAAGATGGCTACATTTGCTCAGATCAAGTAGTTCG
ACTGGAGTTGTCTGGAGTCGTTTATAATCTACCTATGTAATACAGTAGTA
TAGGTTTTATATGAGCTTGCATAAACTATAATGACATCTTTTAGTTTTCG
TTAGTACCATATACTCTAATCTCTTTGAAATCTAGTCGCAAGACGTACTA
CAAACCTTTTTATTAGAACCCAGTTGATAGGAAATTTTAACTGTCCAAAA
AATAAGCACATCCAGGCTCAGCCAAAATCTAGACGTTCTTATAAAGAAAG
TGTTTGTACAAAAGTATTCATCGTCATATTAACTTTGTATTGATTTCAGG
AACTAGAACGTTCAAACAAAGTGGTTGATCATAATTTCCAGAAATTGAAA
GTGGAATCCGATCGACTGGAGGAAATGAACAAACGAAGATGTTCTTGTTC
CATATGGCTCATGCTTGGTGTCGTTTGTATTGTTTTCATTAATATGATCA
TTTTCATCAAGTTCTTCCCTAAAAAGAGAGGTTATTAAAAATGGGCACTT
ATTTTTTCTCATTTTTGTAGGCCCTCCATAATAAAAATTTTCCATTTTTT
GGGGAAGGTTCAGACTGTCTGTTTAGTTTTCATCAATTTCCC

Coding sequence (CDS) from alignment at sc0000031:622135..627176-

>TCONS_00003809 ID=TCONS_00003809|Name=TCONS_00003809|organism=Clytia hemisphaerica|type=CDS|length=5670bp|location=Sequence derived from alignment at sc0000031:622135..627176- (Clytia hemisphaerica)
GAACTAGAACGTTCAAACAAAGTGGTTGATCATAATTTCCAGAAATTGAA
AGTGGAATCCGATCGACTGGAGGAAATGAACAAACGAAGATGTTCTTGTT
CCATATGGCTCATGCTTGGTGTCGTTTGTATTGTTTTCATTAATATGATC
ATTTTCATCAAGTTCTTCCCTAAAAAGAGAGGTTATTAAAGAAACAGAAA
ACAACACGGAGAATAACATTGATGAGATCATCAAACAACATCATGACATC
CAAGAAAAAGTCGCCGAAGAAATGATCCTGATGACGCAACATATGAAACA
AACCACGCTTCGATCACGTGATATTATCAATAAGGATAAACAGGTGAAAA
AGGTTCACATCCACACAGTTTAAGTAAAAGCAAGATCCTTTGGAGAGGAT
CTTGATTTGCCAACACCTCCTTCCAACATCAGTTATTTCATCCACTTCAT
CAATAAACCTGGACGAAGAACAACAGAGAAAAACAAACAATAAAACCAAA
GAACTCCATCTCCAAATTAAAGGGAAACATCAAAACGATTTACGGCGTCA
ATTATTAGGAAGGTTCCAGAAGAAGTGATTACAGAATACAAGCGAAAAGT
GACTTTCCTCAAAGATGTTGTACAAGCTGAAAAAACGTATCTGGAGACGG
CTGATGACCAAATATGCAAAATGGAAACTGATAAAAATTTATCGATATGG
GAAGACAGTCAAGAACAGAAATCAATTTACAACGTTTATTGAGACATTGT
GAAACCATGGCAACTGAGTCTCAACACAAAGAAACTAAAGTCAATTGGAG
GCTGGCAAAGGAACTAGAACGTTCAAACAAAGTGGTTGATCATAATTTCC
AGAAATTGAAAGTGGAATCCGATCGACTGGAGGAAATGAACAAACGAAGA
TGTTCTTGTTCCATATGGCTCATGCTTGGTGTCGTTTGTATTGTTTTCAT
TAATATGATCATTTTCATCAAGTTCTTCCCTAAAAAGAGAGGTTATTAAA
GAAACAGAAAACAACACGGAGAATAACATTGATGAGATCATCAAACAACA
TCATGACATCCAAGAAAAAGTCGCCGAAGAAATGATCCTGATGACGCAAC
ATATGAAACAAACCACGCTTCGATCACGTGATATTATCAATAAGGATAAA
CAGGTGAAAAAGGTTCACATCCACACAGTTTAAGTAAAAGCAAGATCCTT
TGGAGAGGATCTTGATTTGCCAACACCTCCTTCCAACATCAGTTATTTCA
TCCACTTCATCAATAAACCTGGACGAAGAACAACAGAGAAAAACAAACAA
TAAAACCAAAGAACTCCATCTCCAAATTAAAGGGAAACATCAAAACGATT
TACGGCGTCAATTATTAGGAAGGTTCCAGAAGAAGTGATTACAGAATACA
AGCGAAAAGTGACTTTCCTCAAAGATGTTGTACAAGCTGAAAAAACGTAT
CTGGAGACGGCTGATGACCAAATATGCAAAATGGAAACTGATAAAAATTT
ATCGATATGGGAAGACAGTCAAGAACAGAAATCAATTTACAACGTTTATT
GAGACATTGTGAAACCATGGCAACTGAGTCTCAACACAAAGAAACTAAAG
TCAATTGGAGGCTGGCAAAGGAACTAGAACGTTCAAACAAAGTGGTTGAT
CATAATTTCCAGAAATTGAAAGTGGAATCCGATCGACTGGAGGAAATGAA
CAAACGAAGATGTTCTTGTTCCATATGGCTCATGCTTGGTGTCGTTTGTA
TTGTTTTCATTAATATGATCATTTTCATCAAGTTCTTCCCTAAAAAGAGA
GGTTATTAAAGAAACAGAAAACAACACGGAGAATAACATTGATGAGATCA
TCAAACAACATCATGACATCCAAGAAAAAGTCGCCGAAGAAATGATCCTG
ATGACGCAACATATGAAACAAACCACGCTTCGATCACGTGATATTATCAA
TAAGGATAAACAGGTGAAAAAGGTTCACATCCACACAGTTTAAGTAAAAG
CAAGATCCTTTGGAGAGGATCTTGATTTGCCAACACCTCCTTCCAACATC
AGTTATTTCATCCACTTCATCAATAAACCTGGACGAAGAACAACAGAGAA
AAACAAACAATAAAACCAAAGAACTCCATCTCCAAATTAAAGGGAAACAT
CAAAACGATTTACGGCGTCAATTATTAGGAAGGTTCCAGAAGAAGTGATT
ACAGAATACAAGCGAAAAGTGACTTTCCTCAAAGATGTTGTACAAGCTGA
AAAAACGTATCTGGAGACGGCTGATGACCAAATATGCAAAATGGAAACTG
ATAAAAATTTATCGATATGGGAAGACAGTCAAGAACAGAAATCAATTTAC
AACGTTTATTGAGACATTGTGAAACCATGGCAACTGAGTCTCAACACAAA
GAAACTAAAGTCAATTGGAGGCTGGCAAAGGAACTAGAACGTTCAAACAA
AGTGGTTGATCATAATTTCCAGAAATTGAAAGTGGAATCCGATCGACTGG
AGGAAATGAACAAACGAAGATGTTCTTGTTCCATATGGCTCATGCTTGGT
GTCGTTTGTATTGTTTTCATTAATATGATCATTTTCATCAAGTTCTTCCC
TAAAAAGAGAGGTTATTAAAGAAACAGAAAACAACACGGAGAATAACATT
GATGAGATCATCAAACAACATCATGACATCCAAGAAAAAGTCGCCGAAGA
AATGATCCTGATGACGCAACATATGAAACAAACCACGCTTCGATCACGTG
ATATTATCAATAAGGATAAACAGGTGAAAAAGGTTCACATCCACACAGTT
TAAGTAAAAGCAAGATCCTTTGGAGAGGATCTTGATTTGCCAACACCTCC
TTCCAACATCAGTTATTTCATCCACTTCATCAATAAACCTGGACGAAGAA
CAACAGAGAAAAACAAACAATAAAACCAAAGAACTCCATCTCCAAATTAA
AGGGAAACATCAAAACGATTTACGGCGTCAATTATTAGGAAGGTTCCAGA
AGAAGTGATTACAGAATACAAGCGAAAAGTGACTTTCCTCAAAGATGTTG
TACAAGCTGAAAAAACGTATCTGGAGACGGCTGATGACCAAATATGCAAA
ATGGAAACTGATAAAAATTTATCGATATGGGAAGACAGTCAAGAACAGAA
ATCAATTTACAACGTTTATTGAGACATTGTGAAACCATGGCAACTGAGTC
TCAACACAAAGAAACTAAAGTCAATTGGAGGCTGGCAAAGGAACTAGAAC
GTTCAAACAAAGTGGTTGATCATAATTTCCAGAAATTGAAAGTGGAATCC
GATCGACTGGAGGAAATGAACAAACGAAGATGTTCTTGTTCCATATGGCT
CATGCTTGGTGTCGTTTGTATTGTTTTCATTAATATGATCATTTTCATCA
AGTTCTTCCCTAAAAAGAGAGGTTATTAAAGAAACAGAAAACAACACGGA
GAATAACATTGATGAGATCATCAAACAACATCATGACATCCAAGAAAAAG
TCGCCGAAGAAATGATCCTGATGACGCAACATATGAAACAAACCACGCTT
CGATCACGTGATATTATCAATAAGGATAAACAGGTGAAAAAGGTTCACAT
CCACACAGTTTAAGTAAAAGCAAGATCCTTTGGAGAGGATCTTGATTTGC
CAACACCTCCTTCCAACATCAGTTATTTCATCCACTTCATCAATAAACCT
GGACGAAGAACAACAGAGAAAAACAAACAATAAAACCAAAGAACTCCATC
TCCAAATTAAAGGGAAACATCAAAACGATTTACGGCGTCAATTATTAGGA
AGGTTCCAGAAGAAGTGATTACAGAATACAAGCGAAAAGTGACTTTCCTC
AAAGATGTTGTACAAGCTGAAAAAACGTATCTGGAGACGGCTGATGACCA
AATATGCAAAATGGAAACTGATAAAAATTTATCGATATGGGAAGACAGTC
AAGAACAGAAATCAATTTACAACGTTTATTGAGACATTGTGAAACCATGG
CAACTGAGTCTCAACACAAAGAAACTAAAGTCAATTGGAGGCTGGCAAAG
GAACTAGAACGTTCAAACAAAGTGGTTGATCATAATTTCCAGAAATTGAA
AGTGGAATCCGATCGACTGGAGGAAATGAACAAACGAAGATGTTCTTGTT
CCATATGGCTCATGCTTGGTGTCGTTTGTATTGTTTTCATTAATATGATC
ATTTTCATCAAGTTCTTCCCTAAAAAGAGAGGTTATTAAAGAAACAGAAA
ACAACACGGAGAATAACATTGATGAGATCATCAAACAACATCATGACATC
CAAGAAAAAGTCGCCGAAGAAATGATCCTGATGACGCAACATATGAAACA
AACCACGCTTCGATCACGTGATATTATCAATAAGGATAAACAGGTGAAAA
AGGTTCACATCCACACAGTTTAAGTAAAAGCAAGATCCTTTGGAGAGGAT
CTTGATTTGCCAACACCTCCTTCCAACATCAGTTATTTCATCCACTTCAT
CAATAAACCTGGACGAAGAACAACAGAGAAAAACAAACAATAAAACCAAA
GAACTCCATCTCCAAATTAAAGGGAAACATCAAAACGATTTACGGCGTCA
ATTATTAGGAAGGTTCCAGAAGAAGTGATTACAGAATACAAGCGAAAAGT
GACTTTCCTCAAAGATGTTGTACAAGCTGAAAAAACGTATCTGGAGACGG
CTGATGACCAAATATGCAAAATGGAAACTGATAAAAATTTATCGATATGG
GAAGACAGTCAAGAACAGAAATCAATTTACAACGTTTATTGAGACATTGT
GAAACCATGGCAACTGAGTCTCAACACAAAGAAACTAAAGTCAATTGGAG
GCTGGCAAAGGAACTAGAACGTTCAAACAAAGTGGTTGATCATAATTTCC
AGAAATTGAAAGTGGAATCCGATCGACTGGAGGAAATGAACAAACGAAGA
TGTTCTTGTTCCATATGGCTCATGCTTGGTGTCGTTTGTATTGTTTTCAT
TAATATGATCATTTTCATCAAGTTCTTCCCTAAAAAGAGAGGTTATTAAA
GAAACAGAAAACAACACGGAGAATAACATTGATGAGATCATCAAACAACA
TCATGACATCCAAGAAAAAGTCGCCGAAGAAATGATCCTGATGACGCAAC
ATATGAAACAAACCACGCTTCGATCACGTGATATTATCAATAAGGATAAA
CAGGTGAAAAAGGTTCACATCCACACAGTTTAAGTAAAAGCAAGATCCTT
TGGAGAGGATCTTGATTTGCCAACACCTCCTTCCAACATCAGTTATTTCA
TCCACTTCATCAATAAACCTGGACGAAGAACAACAGAGAAAAACAAACAA
TAAAACCAAAGAACTCCATCTCCAAATTAAAGGGAAACATCAAAACGATT
TACGGCGTCAATTATTAGGAAGGTTCCAGAAGAAGTGATTACAGAATACA
AGCGAAAAGTGACTTTCCTCAAAGATGTTGTACAAGCTGAAAAAACGTAT
CTGGAGACGGCTGATGACCAAATATGCAAAATGGAAACTGATAAAAATTT
ATCGATATGGGAAGACAGTCAAGAACAGAAATCAATTTACAACGTTTATT
GAGACATTGTGAAACCATGGCAACTGAGTCTCAACACAAAGAAACTAAAG
TCAATTGGAGGCTGGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002122XLOC_002122Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003809-proteinTCONS_00003809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003809-exon-sc0000031-1575043694:627055..627176TCONS_00003809-exon-sc0000031-1575043694:627055..627176Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1575043694:626759..626811TCONS_00003809-exon-sc0000031-1575043694:626759..626811Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1575043694:626362..626440TCONS_00003809-exon-sc0000031-1575043694:626362..626440Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1575043694:625431..625608TCONS_00003809-exon-sc0000031-1575043694:625431..625608Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1575043694:624742..624778TCONS_00003809-exon-sc0000031-1575043694:624742..624778Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1575043694:623896..624049TCONS_00003809-exon-sc0000031-1575043694:623896..624049Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1575043694:622135..622427TCONS_00003809-exon-sc0000031-1575043694:622135..622427Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1510915933:627055..627176TCONS_00003809-exon-sc0000031-1510915933:627055..627176Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1510915933:626759..626811TCONS_00003809-exon-sc0000031-1510915933:626759..626811Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1510915933:626362..626440TCONS_00003809-exon-sc0000031-1510915933:626362..626440Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1510915933:625431..625608TCONS_00003809-exon-sc0000031-1510915933:625431..625608Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1510915933:624742..624778TCONS_00003809-exon-sc0000031-1510915933:624742..624778Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1510915933:623896..624049TCONS_00003809-exon-sc0000031-1510915933:623896..624049Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1510915933:622135..622427TCONS_00003809-exon-sc0000031-1510915933:622135..622427Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1491911889:627055..627176TCONS_00003809-exon-sc0000031-1491911889:627055..627176Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1491911889:626759..626811TCONS_00003809-exon-sc0000031-1491911889:626759..626811Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1491911889:626362..626440TCONS_00003809-exon-sc0000031-1491911889:626362..626440Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1491911889:625431..625608TCONS_00003809-exon-sc0000031-1491911889:625431..625608Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1491911889:624742..624778TCONS_00003809-exon-sc0000031-1491911889:624742..624778Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1491911889:623896..624049TCONS_00003809-exon-sc0000031-1491911889:623896..624049Clytia hemisphaericaexon
TCONS_00003809-exon-sc0000031-1491911889:622135..622427TCONS_00003809-exon-sc0000031-1491911889:622135..622427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:622135..627176 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
68.8479	71.3459	23.3518	16.2869	23.076	17.7537	34.9027	30.7428	23.5535	19.1181	16.7771	14.3038	11.4138	11.9919	15.4724	17.8885	24.8625	22.3558	9.015	10.0476	13.4394	12.9212	44.1878	45.1948	13.5769	17.4063	17.2019	12.1899	28.0711	32.1183
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019150Vesicle_transport_protein_Use1
Blast
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BLAST of TCONS_00003809 vs. Swiss-Prot (Human)
Match: USE1 (Vesicle transport protein USE1 OS=Homo sapiens GN=USE1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 4.251e-46
Identity = 95/268 (35.45%), Postives = 150/268 (55.97%), Query Frame = 3 
Query:   21 SRTEINLQRLLRHCETMATESQHKETKVNWRLAKYLETADDQICKMETDKNLKVPEEVITEYKRKVTFLKDVVQAEKTQDPLERILICQHLLPTSVISSTSSINLDEEQQRKTNNKTKELHLQIKGKHQNDLRRQLLGEKGSHPH---------SLSKRXXXXXXXXXXXXXXKQHHDIQEKVAEEMILMTQHMKQTTLRSRDIINKDKQELERSNKVVDHNFQKLKVESDRLEEMNKRRCSCSIWLMLGVVCIVFINMIIFIKFFPK 797
            SR E+NL RLL  CE MA E +  +    WRL KY+   +D +  ++   + K   EVI EY  KV FLK ++QAEK     E+ L  Q L P  V ++           R+    TK +HLQ + ++ +++R +LLG   + P          + S+  +E      +D ++++H ++QEK+AEEM+ + + +K  TL ++ +I KD Q L  S K+ D N +KLK ES+RLE+  ++  +  +W ML +VC +FI+MI+FI+  PK
Sbjct:    4 SRLELNLVRLLSRCEAMAAEKRDPD---EWRLEKYVGALEDMLQALKVHAS-KPASEVINEYSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTA----------RERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDLVLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPK 257
The following BLAST results are available for this feature:
BLAST of TCONS_00003809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USE14.251e-4635.45Vesicle transport protein USE1 OS=Homo sapiens GN=... [more]
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